A citation-based method for searching scientific literature

Christiane Theda, Seo Hye Hwang, Anna Czajko, Yuk Jing Loke, Pamela Leong, Jeffrey M Craig. Sci Rep 2018
Times Cited: 52







List of co-cited articles
200 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DNA extracted from saliva for methylation studies of psychiatric traits: evidence tissue specificity and relatedness to brain.
Alicia K Smith, Varun Kilaru, Torsten Klengel, Kristina B Mercer, Bekh Bradley, Karen N Conneely, Kerry J Ressler, Elisabeth B Binder. Am J Med Genet B Neuropsychiatr Genet 2015
170
23

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
19


Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
757
15

A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix.
Shijie C Zheng, Amy P Webster, Danyue Dong, Andy Feber, David G Graham, Roisin Sullivan, Sarah Jevons, Laurence B Lovat, Stephan Beck, Martin Widschwendter,[...]. Epigenomics 2018
38
18

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
696
13

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
13

Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures.
Monika Eipel, Felix Mayer, Tanja Arent, Marcelo R P Ferreira, Carina Birkhofer, Uwe Gerstenmaier, Ivan G Costa, Stefanie Ritz-Timme, Wolfgang Wagner. Aging (Albany NY) 2016
46
13

High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
962
11

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
598
11


Small-Magnitude Effect Sizes in Epigenetic End Points are Important in Children's Environmental Health Studies: The Children's Environmental Health and Disease Prevention Research Center's Epigenetics Working Group.
Carrie V Breton, Carmen J Marsit, Elaine Faustman, Kari Nadeau, Jaclyn M Goodrich, Dana C Dolinoy, Julie Herbstman, Nina Holland, Janine M LaSalle, Rebecca Schmidt,[...]. Environ Health Perspect 2017
122
9

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
9

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array.
Magda E Price, Allison M Cotton, Lucia L Lam, Pau Farré, Eldon Emberly, Carolyn J Brown, Wendy P Robinson, Michael S Kobor. Epigenetics Chromatin 2013
287
9

Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder.
Esther R Berko, Masako Suzuki, Faygel Beren, Christophe Lemetre, Christine M Alaimo, R Brent Calder, Karen Ballaban-Gil, Batya Gounder, Kaylee Kampf, Jill Kirschen,[...]. PLoS Genet 2014
62
9

Genome-wide DNA methylation in neonates exposed to maternal depression, anxiety, or SSRI medication during pregnancy.
Amy L Non, Alexandra M Binder, Laura D Kubzansky, Karin B Michels. Epigenetics 2014
77
9

Buccal swabs but not mouthwash samples can be used to obtain pretransplant DNA fingerprints from recipients of allogeneic bone marrow transplants.
C Thiede, G Prange-Krex, J Freiberg-Richter, M Bornhäuser, G Ehninger. Bone Marrow Transplant 2000
104
9

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
9

Principles and Challenges of Applying Epigenetic Epidemiology to Psychology.
Meaghan J Jones, Sarah R Moore, Michael S Kobor. Annu Rev Psychol 2018
26
15

Epigenetic differences arise during the lifetime of monozygotic twins.
Mario F Fraga, Esteban Ballestar, Maria F Paz, Santiago Ropero, Fernando Setien, Maria L Ballestar, Damia Heine-Suñer, Juan C Cigudosa, Miguel Urioste, Javier Benitez,[...]. Proc Natl Acad Sci U S A 2005
7

Epigenetic vestiges of early developmental adversity: childhood stress exposure and DNA methylation in adolescence.
Marilyn J Essex, W Thomas Boyce, Clyde Hertzman, Lucia L Lam, Jeffrey M Armstrong, Sarah M A Neumann, Michael S Kobor. Child Dev 2013
219
7

Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies.
Robert Lowe, Carolina Gemma, Huriya Beyan, Mohammed I Hawa, Alexandra Bazeos, R David Leslie, Alexandre Montpetit, Vardhman K Rakyan, Sreeram V Ramagopalan. Epigenetics 2013
96
7

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.
Devin C Koestler, Brock Christensen, Margaret R Karagas, Carmen J Marsit, Scott M Langevin, Karl T Kelsey, John K Wiencke, E Andres Houseman. Epigenetics 2013
144
7

Age-associated DNA methylation in pediatric populations.
Reid S Alisch, Benjamin G Barwick, Pankaj Chopra, Leila K Myrick, Glen A Satten, Karen N Conneely, Stephen T Warren. Genome Res 2012
225
7

DNA methylation and healthy human aging.
Meaghan J Jones, Sarah J Goodman, Michael S Kobor. Aging Cell 2015
319
7

Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses.
Tim F Oberlander, Joanne Weinberg, Michael Papsdorf, Ruth Grunau, Shaila Misri, Angela M Devlin. Epigenetics 2008
786
7


Low-level processing of Illumina Infinium DNA Methylation BeadArrays.
Timothy J Triche, Daniel J Weisenberger, David Van Den Berg, Peter W Laird, Kimberly D Siegmund. Nucleic Acids Res 2013
283
7

The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells.
Lisa M McEwen, Kieran J O'Donnell, Megan G McGill, Rachel D Edgar, Meaghan J Jones, Julia L MacIsaac, David Tse Shen Lin, Katia Ramadori, Alexander Morin, Nicole Gladish,[...]. Proc Natl Acad Sci U S A 2020
21
19

Cigarette smoking and DNA methylation.
Ken W K Lee, Zdenka Pausova. Front Genet 2013
202
5


Salivary DNA Methylation Profiling: Aspects to Consider for Biomarker Identification.
Sabine A S Langie, Matthieu Moisse, Ken Declerck, Gudrun Koppen, Lode Godderis, Wim Vanden Berghe, Stacy Drury, Patrick De Boever. Basic Clin Pharmacol Toxicol 2017
31
9

BECon: a tool for interpreting DNA methylation findings from blood in the context of brain.
R D Edgar, M J Jones, M J Meaney, G Turecki, M S Kobor. Transl Psychiatry 2017
81
5

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
321
5

Validation of Minimally-Invasive Sample Collection Methods for Measurement of Telomere Length.
Stephanie A Stout, Jue Lin, Natalie Hernandez, Elysia P Davis, Elizabeth Blackburn, Judith E Carroll, Laura M Glynn. Front Aging Neurosci 2017
19
15



Telomere measurement by quantitative PCR.
Richard M Cawthon. Nucleic Acids Res 2002
5

The effect of genotype and in utero environment on interindividual variation in neonate DNA methylomes.
Ai Ling Teh, Hong Pan, Li Chen, Mei-Lyn Ong, Shaillay Dogra, Johnny Wong, Julia L MacIsaac, Sarah M Mah, Lisa M McEwen, Seang-Mei Saw,[...]. Genome Res 2014
175
5



The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
5

Correlation of Smoking-Associated DNA Methylation Changes in Buccal Cells With DNA Methylation Changes in Epithelial Cancer.
Andrew E Teschendorff, Zhen Yang, Andrew Wong, Christodoulos P Pipinikas, Yinming Jiao, Allison Jones, Shahzia Anjum, Rebecca Hardy, Helga B Salvesen, Christina Thirlwell,[...]. JAMA Oncol 2015
106
5

Associating cellular epigenetic models with human phenotypes.
Tuuli Lappalainen, John M Greally. Nat Rev Genet 2017
115
5

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Andrew E Teschendorff, Charles E Breeze, Shijie C Zheng, Stephan Beck. BMC Bioinformatics 2017
90
5


Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse.
Patrick O McGowan, Aya Sasaki, Ana C D'Alessio, Sergiy Dymov, Benoit Labonté, Moshe Szyf, Gustavo Turecki, Michael J Meaney. Nat Neurosci 2009
5

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
5

Maternal prenatal depressive symptoms predict infant NR3C1 1F and BDNF IV DNA methylation.
E C Braithwaite, M Kundakovic, P G Ramchandani, S E Murphy, F A Champagne. Epigenetics 2015
117
5

Maternal depression is associated with DNA methylation changes in cord blood T lymphocytes and adult hippocampi.
Z Nemoda, R Massart, M Suderman, M Hallett, T Li, M Coote, N Cody, Z S Sun, C N Soares, G Turecki,[...]. Transl Psychiatry 2015
54
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.