A citation-based method for searching scientific literature

Michal Shoshkes-Carmel, Yue J Wang, Kirk J Wangensteen, Beáta Tóth, Ayano Kondo, Efi E Massasa, Shalev Itzkovitz, Klaus H Kaestner. Nature 2018
Times Cited: 210







List of co-cited articles
1005 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells.
Bahar Degirmenci, Tomas Valenta, Slavica Dimitrieva, George Hausmann, Konrad Basler. Nature 2018
151
52

Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
47

PDGFRα+ pericryptal stromal cells are the critical source of Wnts and RSPO3 for murine intestinal stem cells in vivo.
Gediminas Greicius, Zahra Kabiri, Kristmundur Sigmundsson, Chao Liang, Ralph Bunte, Manvendra K Singh, David M Virshup. Proc Natl Acad Sci U S A 2018
134
47

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts.
Toshiro Sato, Johan H van Es, Hugo J Snippert, Daniel E Stange, Robert G Vries, Maaike van den Born, Nick Barker, Noah F Shroyer, Marc van de Wetering, Hans Clevers. Nature 2011
44

Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient.
Neil McCarthy, Elisa Manieri, Elaine E Storm, Assieh Saadatpour, Adrienne M Luoma, Varun N Kapoor, Shariq Madha, Liam T Gaynor, Christian Cox, Shilpa Keerthivasan,[...]. Cell Stem Cell 2020
77
49

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
37

CD34+ mesenchymal cells are a major component of the intestinal stem cells niche at homeostasis and after injury.
Igor Stzepourginski, Giulia Nigro, Jean-Marie Jacob, Sophie Dulauroy, Philippe J Sansonetti, Gérard Eberl, Lucie Peduto. Proc Natl Acad Sci U S A 2017
142
36

Foxl1-expressing mesenchymal cells constitute the intestinal stem cell niche.
Reina Aoki, Michal Shoshkes-Carmel, Nan Gao, Soona Shin, Catherine L May, Maria L Golson, Adam M Zahm, Michael Ray, Caroline L Wiser, Christopher V E Wright,[...]. Cell Mol Gastroenterol Hepatol 2016
139
33

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.
James Kinchen, Hannah H Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar,[...]. Cell 2018
201
27

Stroma provides an intestinal stem cell niche in the absence of epithelial Wnts.
Zahra Kabiri, Gediminas Greicius, Babita Madan, Steffen Biechele, Zhendong Zhong, Hamed Zaribafzadeh, Edison, Jamal Aliyev, Yonghui Wu, Ralph Bunte,[...]. Development 2014
210
24

Redundant sources of Wnt regulate intestinal stem cells and promote formation of Paneth cells.
Henner F Farin, Johan H Van Es, Hans Clevers. Gastroenterology 2012
393
24

Replacement of Lost Lgr5-Positive Stem Cells through Plasticity of Their Enterocyte-Lineage Daughters.
Paul W Tetteh, Onur Basak, Henner F Farin, Kay Wiebrands, Kai Kretzschmar, Harry Begthel, Maaike van den Born, Jeroen Korving, Frederic de Sauvage, Johan H van Es,[...]. Cell Stem Cell 2016
307
23

A reserve stem cell population in small intestine renders Lgr5-positive cells dispensable.
Hua Tian, Brian Biehs, Søren Warming, Kevin G Leong, Linda Rangell, Ophir D Klein, Frederic J de Sauvage. Nature 2011
756
23

Dll1+ secretory progenitor cells revert to stem cells upon crypt damage.
Johan H van Es, Toshiro Sato, Marc van de Wetering, Anna Lyubimova, Annie Ng Yee Nee, Alex Gregorieff, Nobuo Sasaki, Laura Zeinstra, Maaike van den Born, Jeroen Korving,[...]. Nat Cell Biol 2012
493
22

Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell.
Arshad Ayyaz, Sandeep Kumar, Bruno Sangiorgi, Bibaswan Ghoshal, Jessica Gosio, Shaida Ouladan, Mardi Fink, Seda Barutcu, Daniel Trcka, Jess Shen,[...]. Nature 2019
148
21

YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration.
Shiro Yui, Luca Azzolin, Martti Maimets, Marianne Terndrup Pedersen, Robert P Fordham, Stine L Hansen, Hjalte L Larsen, Jordi Guiu, Mariana R P Alves, Carsten F Rundsten,[...]. Cell Stem Cell 2018
225
20

Intact function of Lgr5 receptor-expressing intestinal stem cells in the absence of Paneth cells.
Tae-Hee Kim, Silvia Escudero, Ramesh A Shivdasani. Proc Natl Acad Sci U S A 2012
164
20

Functional intestinal stem cells after Paneth cell ablation induced by the loss of transcription factor Math1 (Atoh1).
Aurélie Durand, Bridgitte Donahue, Grégory Peignon, Franck Letourneur, Nicolas Cagnard, Christian Slomianny, Christine Perret, Noah F Shroyer, Béatrice Romagnolo. Proc Natl Acad Sci U S A 2012
212
20

Wnt Ligands Secreted by Subepithelial Mesenchymal Cells Are Essential for the Survival of Intestinal Stem Cells and Gut Homeostasis.
Tomas Valenta, Bahar Degirmenci, Andreas E Moor, Patrick Herr, Dario Zimmerli, Matthias B Moor, George Hausmann, Claudio Cantù, Michel Aguet, Konrad Basler. Cell Rep 2016
140
20

Lgr5+ telocytes are a signaling source at the intestinal villus tip.
Keren Bahar Halpern, Hassan Massalha, Rachel K Zwick, Andreas E Moor, David Castillo-Azofeifa, Milena Rozenberg, Lydia Farack, Adi Egozi, Dan R Miller, Inna Averbukh,[...]. Nat Commun 2020
40
45

Cellular and molecular architecture of the intestinal stem cell niche.
Neil McCarthy, Judith Kraiczy, Ramesh A Shivdasani. Nat Cell Biol 2020
34
52

Single cell and genetic analyses reveal conserved populations and signaling mechanisms of gastrointestinal stromal niches.
Ji-Eun Kim, Lijiang Fei, Wen-Chi Yin, Sabrina Coquenlorge, Abilasha Rao-Bhatia, Xiaoyun Zhang, Sammy Shun Wai Shi, Ju Hee Lee, Noah A Hahn, Wasi Rizvi,[...]. Nat Commun 2020
28
60

Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche.
Ysbrand M Nusse, Adam K Savage, Pauline Marangoni, Axel K M Rosendahl-Huber, Tyler A Landman, Frederic J de Sauvage, Richard M Locksley, Ophir D Klein. Nature 2018
104
16

Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells.
Hugo J Snippert, Laurens G van der Flier, Toshiro Sato, Johan H van Es, Maaike van den Born, Carla Kroon-Veenboer, Nick Barker, Allon M Klein, Jacco van Rheenen, Benjamin D Simons,[...]. Cell 2010
16

Paneth Cell Multipotency Induced by Notch Activation following Injury.
Shiyan Yu, Kevin Tong, Yanlin Zhao, Iyshwarya Balasubramanian, George S Yap, Ronaldo P Ferraris, Edward M Bonder, Michael P Verzi, Nan Gao. Cell Stem Cell 2018
112
16

Tales from the crypt: new insights into intestinal stem cells.
Helmuth Gehart, Hans Clevers. Nat Rev Gastroenterol Hepatol 2019
272
16

Paracrine orchestration of intestinal tumorigenesis by a mesenchymal niche.
Manolis Roulis, Aimilios Kaklamanos, Marina Schernthanner, Piotr Bielecki, Jun Zhao, Eleanna Kaffe, Laura-Sophie Frommelt, Rihao Qu, Marlene S Knapp, Ana Henriques,[...]. Nature 2020
86
18

Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells.
Unmesh Jadhav, Madhurima Saxena, Nicholas K O'Neill, Assieh Saadatpour, Guo-Cheng Yuan, Zachary Herbert, Kazutaka Murata, Ramesh A Shivdasani. Cell Stem Cell 2017
124
15

Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Kelley S Yan, Olivier Gevaert, Grace X Y Zheng, Benedict Anchang, Christopher S Probert, Kathryn A Larkin, Paige S Davies, Zhuan-Fen Cheng, John S Kaddis, Arnold Han,[...]. Cell Stem Cell 2017
179
15

Canonical Wnt signals are essential for homeostasis of the intestinal epithelium.
Daniel Pinto, Alex Gregorieff, Harry Begthel, Hans Clevers. Genes Dev 2003
733
15

Yap-dependent reprogramming of Lgr5(+) stem cells drives intestinal regeneration and cancer.
Alex Gregorieff, Yu Liu, Mohammad R Inanlou, Yuliya Khomchuk, Jeffrey L Wrana. Nature 2015
292
15

Bmi1 is expressed in vivo in intestinal stem cells.
Eugenio Sangiorgi, Mario R Capecchi. Nat Genet 2008
872
15

Interconversion between intestinal stem cell populations in distinct niches.
Norifumi Takeda, Rajan Jain, Matthew R LeBoeuf, Qiaohong Wang, Min Min Lu, Jonathan A Epstein. Science 2011
490
15

Reg4+ deep crypt secretory cells function as epithelial niche for Lgr5+ stem cells in colon.
Nobuo Sasaki, Norman Sachs, Kay Wiebrands, Saskia I J Ellenbroek, Arianna Fumagalli, Anna Lyubimova, Harry Begthel, Maaike van den Born, Johan H van Es, Wouter R Karthaus,[...]. Proc Natl Acad Sci U S A 2016
143
15

Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells.
Kazutaka Murata, Unmesh Jadhav, Shariq Madha, Johan van Es, Justin Dean, Alessia Cavazza, Kai Wucherpfennig, Franziska Michor, Hans Clevers, Ramesh A Shivdasani. Cell Stem Cell 2020
70
21

Intestinal label-retaining cells are secretory precursors expressing Lgr5.
Simon J A Buczacki, Heather Ireland Zecchini, Anna M Nicholson, Roslin Russell, Louis Vermeulen, Richard Kemp, Douglas J Winton. Nature 2013
505
14

BMP restricts stemness of intestinal Lgr5+ stem cells by directly suppressing their signature genes.
Zhen Qi, Yehua Li, Bing Zhao, Chi Xu, Yuan Liu, Haonan Li, Bingjie Zhang, Xinquan Wang, Xiao Yang, Wei Xie,[...]. Nat Commun 2017
123
14

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman,[...]. Cell 2019
288
14

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.
Moshe Biton, Adam L Haber, Noga Rogel, Grace Burgin, Semir Beyaz, Alexandra Schnell, Orr Ashenberg, Chien-Wen Su, Christopher Smillie, Karthik Shekhar,[...]. Cell 2018
178
13

Interleukin-22 promotes intestinal-stem-cell-mediated epithelial regeneration.
Caroline A Lindemans, Marco Calafiore, Anna M Mertelsmann, Margaret H O'Connor, Jarrod A Dudakov, Robert R Jenq, Enrico Velardi, Lauren F Young, Odette M Smith, Gillian Lawrence,[...]. Nature 2015
518
13

Paneth Cells Respond to Inflammation and Contribute to Tissue Regeneration by Acquiring Stem-like Features through SCF/c-Kit Signaling.
Mark Schmitt, Matthias Schewe, Andrea Sacchetti, Danny Feijtel, Wesley S van de Geer, Miriam Teeuwssen, Hein F Sleddens, Rosalie Joosten, Martin E van Royen, Harmen J G van de Werken,[...]. Cell Rep 2018
95
13

BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-beta-catenin signaling.
Xi C He, Jiwang Zhang, Wei-Gang Tong, Ossama Tawfik, Jason Ross, David H Scoville, Qiang Tian, Xin Zeng, Xi He, Leanne M Wiedemann,[...]. Nat Genet 2004
742
13

A single-cell survey of the small intestinal epithelium.
Adam L Haber, Moshe Biton, Noga Rogel, Rebecca H Herbst, Karthik Shekhar, Christopher Smillie, Grace Burgin, Toni M Delorey, Michael R Howitt, Yarden Katz,[...]. Nature 2017
589
13


Visualization of a short-range Wnt gradient in the intestinal stem-cell niche.
Henner F Farin, Ingrid Jordens, Mohammed H Mosa, Onur Basak, Jeroen Korving, Daniele V F Tauriello, Karin de Punder, Stephane Angers, Peter J Peters, Madelon M Maurice,[...]. Nature 2016
287
12

Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors.
Cynthia Kosinski, Vivian S W Li, Annie S Y Chan, Ji Zhang, Coral Ho, Wai Yin Tsui, Tsun Leung Chan, Randy C Mifflin, Don W Powell, Siu Tsan Yuen,[...]. Proc Natl Acad Sci U S A 2007
378
12

mTORC1 in the Paneth cell niche couples intestinal stem-cell function to calorie intake.
Ömer H Yilmaz, Pekka Katajisto, Dudley W Lamming, Yetis Gültekin, Khristian E Bauer-Rowe, Shomit Sengupta, Kivanc Birsoy, Abdulmetin Dursun, V Onur Yilmaz, Martin Selig,[...]. Nature 2012
440
12

Interplay between metabolic identities in the intestinal crypt supports stem cell function.
Maria J Rodríguez-Colman, Matthias Schewe, Maaike Meerlo, Edwin Stigter, Johan Gerrits, Mia Pras-Raves, Andrea Sacchetti, Marten Hornsveld, Koen C Oost, Hugo J Snippert,[...]. Nature 2017
224
12

Mapping Development of the Human Intestinal Niche at Single-Cell Resolution.
Emily M Holloway, Michael Czerwinski, Yu-Hwai Tsai, Joshua H Wu, Angeline Wu, Charlie J Childs, Katherine D Walton, Caden W Sweet, Qianhui Yu, Ian Glass,[...]. Cell Stem Cell 2021
32
37

The intestinal stem cell markers Bmi1 and Lgr5 identify two functionally distinct populations.
Kelley S Yan, Luis A Chia, Xingnan Li, Akifumi Ootani, James Su, Josephine Y Lee, Nan Su, Yuling Luo, Sarah C Heilshorn, Manuel R Amieva,[...]. Proc Natl Acad Sci U S A 2012
534
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.