A citation-based method for searching scientific literature

Zhiye Wang, Zeyang Ma, Claudia Castillo-González, Di Sun, Yanjun Li, Bin Yu, Baoyu Zhao, Pingwei Li, Xiuren Zhang. Nature 2018
Times Cited: 68







List of co-cited articles
663 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.
Zhicheng Dong, Meng-Hsuan Han, Nina Fedoroff. Proc Natl Acad Sci U S A 2008
258
36


SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.
Li Yang, Ziqiang Liu, Feng Lu, Aiwu Dong, Hai Huang. Plant J 2006
264
33

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
Sascha Laubinger, Timo Sachsenberg, Georg Zeller, Wolfgang Busch, Jan U Lohmann, Gunnar Rätsch, Detlef Weigel. Proc Natl Acad Sci U S A 2008
269
29

Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway.
Nicolas G Bologna, Raphael Iselin, Luciano A Abriata, Alexis Sarazin, Nathan Pumplin, Florence Jay, Thomas Grentzinger, Matteo Dal Peraro, Olivier Voinnet. Mol Cell 2018
105
29

Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1.
Hongliang Zhu, Yuyi Zhou, Claudia Castillo-González, Amber Lu, Chunxiao Ge, Ying-Tao Zhao, Liusheng Duan, Zhaohu Li, Michael J Axtell, Xiu-Jie Wang,[...]. Nat Struct Mol Biol 2013
87
27

SERRATE: a new player on the plant microRNA scene.
Dajana Lobbes, Ghanasyam Rallapalli, Dominik D Schmidt, Cathie Martin, Jonathan Clarke. EMBO Rep 2006
244
27


The Protein Phosphatase 4 and SMEK1 Complex Dephosphorylates HYL1 to Promote miRNA Biogenesis by Antagonizing the MAPK Cascade in Arabidopsis.
Chuanbin Su, Ziwei Li, Jinping Cheng, Lei Li, Songxiao Zhong, Li Liu, Yun Zheng, Binglian Zheng. Dev Cell 2017
46
39

SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis.
Shengjun Li, Ran Xu, Aixia Li, Kan Liu, Liqing Gu, Mu Li, Hairui Zhang, Yueying Zhang, Shangshang Zhuang, Quanhui Wang,[...]. Nucleic Acids Res 2018
19
89

Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1.
Pablo A Manavella, Jörg Hagmann, Felix Ott, Sascha Laubinger, Mirita Franz, Boris Macek, Detlef Weigel. Cell 2012
148
25

Biogenesis, turnover, and mode of action of plant microRNAs.
Kestrel Rogers, Xuemei Chen. Plant Cell 2013
526
23


KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis.
Zhonghui Zhang, Xinwei Guo, Chunxiao Ge, Zeyang Ma, Mengqiu Jiang, Tianhong Li, Hisashi Koiwa, Seong Wook Yang, Xiuren Zhang. Proc Natl Acad Sci U S A 2017
51
31

The SnRK2 kinases modulate miRNA accumulation in Arabidopsis.
Jun Yan, Pengcheng Wang, Bangshing Wang, Chuan-Chih Hsu, Kai Tang, Hairong Zhang, Yueh-Ju Hou, Yang Zhao, Qiming Wang, Chunzhao Zhao,[...]. PLoS Genet 2017
52
30

NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.
Lulu Wang, Xianwei Song, Lianfeng Gu, Xin Li, Shouyun Cao, Chengcai Chu, Xia Cui, Xuemei Chen, Xiaofeng Cao. Plant Cell 2013
98
23

COP1 E3 ligase protects HYL1 to retain microRNA biogenesis.
Seok Keun Cho, Samir Ben Chaabane, Pratik Shah, Christian Peter Poulsen, Seong Wook Yang. Nat Commun 2014
73
23

Linking key steps of microRNA biogenesis by TREX-2 and the nuclear pore complex in Arabidopsis.
Bailong Zhang, Chenjiang You, Yong Zhang, Liping Zeng, Jun Hu, Minglei Zhao, Xuemei Chen. Nat Plants 2020
30
53

The 'how' and 'where' of plant microRNAs.
Yu Yu, Tianran Jia, Xuemei Chen. New Phytol 2017
192
22

Nuclear processing and export of microRNAs in Arabidopsis.
Mee Yeon Park, Gang Wu, Alfredo Gonzalez-Sulser, Hervé Vaucheret, R Scott Poethig. Proc Natl Acad Sci U S A 2005
406
22

Methylation as a crucial step in plant microRNA biogenesis.
Bin Yu, Zhiyong Yang, Junjie Li, Svetlana Minakhina, Maocheng Yang, Richard W Padgett, Ruth Steward, Xuemei Chen. Science 2005
676
22

Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis.
Guodong Ren, Meng Xie, Yongchao Dou, Shuxin Zhang, Chi Zhang, Bin Yu. Proc Natl Acad Sci U S A 2012
119
22


The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing.
Tianran Jia, Bailong Zhang, Chenjiang You, Yong Zhang, Liping Zeng, Shengjun Li, Kaeli C M Johnson, Bin Yu, Xin Li, Xuemei Chen. Plant Cell 2017
42
35

Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.
Yukio Kurihara, Yuichiro Watanabe. Proc Natl Acad Sci U S A 2004
637
20

Expression of Arabidopsis MIRNA genes.
Zhixin Xie, Edwards Allen, Noah Fahlgren, Adam Calamar, Scott A Givan, James C Carrington. Plant Physiol 2005
426
20

A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation.
Natalia P Achkar, Seok Keun Cho, Christian Poulsen, Agustin L Arce, Delfina A Re, Axel J Giudicatti, Elizabeth Karayekov, Moon Young Ryu, Suk Won Choi, Jesper Harholt,[...]. Dev Cell 2018
32
43


STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis.
Samir Ben Chaabane, Renyi Liu, Viswanathan Chinnusamy, Yerim Kwon, Joo-hyuk Park, Seo Yeon Kim, Jian-Kang Zhu, Seong Wook Yang, Byeong-ha Lee. Nucleic Acids Res 2013
70
20

Phase separation of SERRATE drives dicing body assembly and promotes miRNA processing in Arabidopsis.
Dongqi Xie, Min Chen, Jinrong Niu, Liang Wang, Yan Li, Xiaofeng Fang, Pilong Li, Yijun Qi. Nat Cell Biol 2021
39
35

An importin β protein negatively regulates MicroRNA activity in Arabidopsis.
Wei Wang, Ruiqiang Ye, Ying Xin, Xiaofeng Fang, Chunlian Li, Huiqing Shi, Xueping Zhou, Yijun Qi. Plant Cell 2011
111
19

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.
Katarzyna Dorota Raczynska, Agata Stepien, Daniel Kierzkowski, Malgorzata Kalak, Mateusz Bajczyk, Jim McNicol, Craig G Simpson, Zofia Szweykowska-Kulinska, John W S Brown, Artur Jarmolowski. Nucleic Acids Res 2014
58
20

Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development.
Hongliang Zhu, Fuqu Hu, Ronghui Wang, Xin Zhou, Sing-Hoi Sze, Lisa Wen Liou, Ashley Barefoot, Martin Dickman, Xiuren Zhang. Cell 2011
288
17

Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.
Seong Wook Yang, Hong-Ying Chen, Jing Yang, Satoru Machida, Nam-Hai Chua, Y Adam Yuan. Structure 2010
115
17

The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana.
Yun Ju Kim, Binglian Zheng, Yu Yu, So Youn Won, Beixin Mo, Xuemei Chen. EMBO J 2011
173
17

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis.
Bin Yu, Liu Bi, Binglian Zheng, Lijuan Ji, David Chevalier, Manu Agarwal, Vanitharani Ramachandran, Wanxiang Li, Thierry Lagrange, John C Walker,[...]. Proc Natl Acad Sci U S A 2008
195
17

The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation.
Meng-Hsuan Han, Saiprasad Goud, Liang Song, Nina Fedoroff. Proc Natl Acad Sci U S A 2004
336
17

A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.
Nicolás G Bologna, Julieta L Mateos, Edgardo G Bresso, Javier F Palatnik. EMBO J 2009
131
17

Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression.
Zeyang Ma, Claudia Castillo-González, Zhiye Wang, Di Sun, Xiaomei Hu, Xuefeng Shen, Magdalena E Potok, Xiuren Zhang. Dev Cell 2018
26
46

CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.
Wonkeun Park, Junjie Li, Rentao Song, Joachim Messing, Xuemei Chen. Curr Biol 2002
801
16

miRNA Biogenesis: A Dynamic Pathway.
Natalia P Achkar, Damián A Cambiagno, Pablo A Manavella. Trends Plant Sci 2016
140
16


Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs.
Sanghee Kim, Jun-Yi Yang, Jun Xu, In-Cheol Jang, Michael J Prigge, Nam-Hai Chua. Plant Cell Physiol 2008
119
16

Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body.
Liang Song, Meng-Hsuan Han, Joanna Lesicka, Nina Fedoroff. Proc Natl Acad Sci U S A 2007
179
16

MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
Shengjun Li, Kan Liu, Bangjun Zhou, Mu Li, Shuxin Zhang, Lirong Zeng, Chi Zhang, Bin Yu. Plant Cell 2018
36
30

The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis.
Suikang Wang, Li Quan, Shaofang Li, Chenjiang You, Yong Zhang, Lei Gao, Liping Zeng, Lin Liu, Yanhua Qi, Beixin Mo,[...]. Plant Cell 2019
29
37

Multiple RNA recognition patterns during microRNA biogenesis in plants.
Nicolás G Bologna, Arnaldo L Schapire, Jixian Zhai, Uciel Chorostecki, Jerome Boisbouvier, Blake C Meyers, Javier F Palatnik. Genome Res 2013
74
16

Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes.
Corinna Speth, Emese Xochitl Szabo, Claudia Martinho, Silvio Collani, Sven Zur Oven-Krockhaus, Sandra Richter, Irina Droste-Borel, Boris Macek, York-Dieter Stierhof, Markus Schmid,[...]. Elife 2018
21
52

The functions of plant small RNAs in development and in stress responses.
Shengjun Li, Claudia Castillo-González, Bin Yu, Xiuren Zhang. Plant J 2017
105
16

MicroRNAs and Their Regulatory Roles in Plant-Environment Interactions.
Xianwei Song, Yan Li, Xiaofeng Cao, Yijun Qi. Annu Rev Plant Biol 2019
250
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.