A citation-based method for searching scientific literature

Nikos Karaiskos, Mahdieh Rahmatollahi, Anastasiya Boltengagen, Haiyue Liu, Martin Hoehne, Markus Rinschen, Bernhard Schermer, Thomas Benzing, Nikolaus Rajewsky, Christine Kocks, Martin Kann, Roman-Ulrich Müller. J Am Soc Nephrol 2018
Times Cited: 82







List of co-cited articles
669 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease.
Jihwan Park, Rojesh Shrestha, Chengxiang Qiu, Ayano Kondo, Shizheng Huang, Max Werth, Mingyao Li, Jonathan Barasch, Katalin Suszták. Science 2018
449
64


Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors.
Matthew D Young, Thomas J Mitchell, Felipe A Vieira Braga, Maxine G B Tran, Benjamin J Stewart, John R Ferdinand, Grace Collord, Rachel A Botting, Dorin-Mirel Popescu, Kevin W Loudon,[...]. Science 2018
255
28

Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response.
Haojia Wu, Andrew F Malone, Erinn L Donnelly, Yuhei Kirita, Kohei Uchimura, Sai M Ramakrishnan, Joseph P Gaut, Benjamin D Humphreys. J Am Soc Nephrol 2018
156
25

Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Changes in Experimental Diabetic Kidney Disease.
Jia Fu, Kemal M Akat, Zeguo Sun, Weijia Zhang, Detlef Schlondorff, Zhihong Liu, Thomas Tuschl, Kyung Lee, John Cijiang He. J Am Soc Nephrol 2019
63
26

Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq.
Lihe Chen, Jae Wook Lee, Chung-Lin Chou, Anil V Nair, Maria A Battistone, Teodor G Păunescu, Maria Merkulova, Sylvie Breton, Jill W Verlander, Susan M Wall,[...]. Proc Natl Acad Sci U S A 2017
132
19

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.
Blue B Lake, Song Chen, Masato Hoshi, Nongluk Plongthongkum, Diane Salamon, Amanda Knoten, Anitha Vijayan, Ramakrishna Venkatesh, Eric H Kim, Derek Gao,[...]. Nat Commun 2019
98
18

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
17



Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
14

Mapping the Mouse Cell Atlas by Microwell-Seq.
Xiaoping Han, Renying Wang, Yincong Zhou, Lijiang Fei, Huiyu Sun, Shujing Lai, Assieh Saadatpour, Ziming Zhou, Haide Chen, Fang Ye,[...]. Cell 2018
513
14


STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney.
Andrew Ransick, Nils O Lindström, Jing Liu, Qin Zhu, Jin-Jin Guo, Gregory F Alvarado, Albert D Kim, Hannah G Black, Junhyong Kim, Andrew P McMahon. Dev Cell 2019
114
13

The single-cell transcriptomic landscape of early human diabetic nephropathy.
Parker C Wilson, Haojia Wu, Yuhei Kirita, Kohei Uchimura, Nicolas Ledru, Helmut G Rennke, Paul A Welling, Sushrut S Waikar, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2019
126
13

A new method for large scale isolation of kidney glomeruli from mice.
Minoru Takemoto, Noomi Asker, Holger Gerhardt, Andrea Lundkvist, Bengt R Johansson, Yasushi Saito, Christer Betsholtz. Am J Pathol 2002
413
12

Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes.
Jae Wook Lee, Chung-Lin Chou, Mark A Knepper. J Am Soc Nephrol 2015
325
12

Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis.
Evan Der, Saritha Ranabothu, Hemant Suryawanshi, Kemal M Akat, Robert Clancy, Pavel Morozov, Manjunath Kustagi, Mareike Czuppa, Peter Izmirly, H Michael Belmont,[...]. JCI Insight 2017
105
12

Genome-wide identification of genes essential for podocyte cytoskeletons based on single-cell RNA sequencing.
Yuqiu Lu, Yuting Ye, Wenduona Bao, Qianqian Yang, Jinquan Wang, Zhihong Liu, Shaolin Shi. Kidney Int 2017
40
25

Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis.
Nils O Lindström, Guilherme De Sena Brandine, Tracy Tran, Andrew Ransick, Gio Suh, Jinjin Guo, Albert D Kim, Riana K Parvez, Seth W Ruffins, Elisabeth A Rutledge,[...]. Dev Cell 2018
91
10

Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations.
Susanne C van den Brink, Fanny Sage, Ábel Vértesy, Bastiaan Spanjaard, Josi Peterson-Maduro, Chloé S Baron, Catherine Robin, Alexander van Oudenaarden. Nat Methods 2017
373
10

Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury.
Jun-Jae Chung, Leonard Goldstein, Ying-Jiun J Chen, Jiyeon Lee, Joshua D Webster, Merone Roose-Girma, Sharad C Paudyal, Zora Modrusan, Anwesha Dey, Andrey S Shaw. J Am Soc Nephrol 2020
35
25

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
9


A molecular atlas of cell types and zonation in the brain vasculature.
Michael Vanlandewijck, Liqun He, Maarja Andaloussi Mäe, Johanna Andrae, Koji Ando, Francesca Del Gaudio, Khayrun Nahar, Thibaud Lebouvier, Bàrbara Laviña, Leonor Gouveia,[...]. Nature 2018
677
9

Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks.
Melanie Boerries, Florian Grahammer, Sven Eiselein, Moritz Buck, Charlotte Meyer, Markus Goedel, Wibke Bechtel, Stefan Zschiedrich, Dietmar Pfeifer, Denis Laloë,[...]. Kidney Int 2013
112
9

Single-Cell RNA Sequencing Reveals Renal Endothelium Heterogeneity and Metabolic Adaptation to Water Deprivation.
Sébastien J Dumas, Elda Meta, Mila Borri, Jermaine Goveia, Katerina Rohlenova, Nadine V Conchinha, Kim Falkenberg, Laure-Anne Teuwen, Laura de Rooij, Joanna Kalucka,[...]. J Am Soc Nephrol 2020
49
16

Single-Cell Transcriptome Atlas of Murine Endothelial Cells.
Joanna Kalucka, Laura P M H de Rooij, Jermaine Goveia, Katerina Rohlenova, Sébastien J Dumas, Elda Meta, Nadine V Conchinha, Federico Taverna, Laure-Anne Teuwen, Koen Veys,[...]. Cell 2020
271
9

Single-cell RNA sequencing of human kidney.
Jinling Liao, Zhenyuan Yu, Yang Chen, Mengying Bao, Chunlin Zou, Haiying Zhang, Deyun Liu, Tianyu Li, Qingyun Zhang, Jiaping Li,[...]. Sci Data 2020
62
12

Comparative Analysis of Single-Cell RNA Sequencing Methods.
Christoph Ziegenhain, Beate Vieth, Swati Parekh, Björn Reinius, Amy Guillaumet-Adkins, Martha Smets, Heinrich Leonhardt, Holger Heyn, Ines Hellmann, Wolfgang Enard. Mol Cell 2017
620
8

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
897
8

Single-cell chromatin accessibility reveals principles of regulatory variation.
Jason D Buenrostro, Beijing Wu, Ulrike M Litzenburger, Dave Ruff, Michael L Gonzales, Michael P Snyder, Howard Y Chang, William J Greenleaf. Nature 2015
912
8

Renal compartment-specific genetic variation analyses identify new pathways in chronic kidney disease.
Chengxiang Qiu, Shizheng Huang, Jihwan Park, YoSon Park, Yi-An Ko, Matthew J Seasock, Joshua S Bryer, Xiang-Xi Xu, Wen-Chao Song, Matthew Palmer,[...]. Nat Med 2018
98
8

Transcriptome analysis of human diabetic kidney disease.
Karolina I Woroniecka, Ae Seo Deok Park, Davoud Mohtat, David B Thomas, James M Pullman, Katalin Susztak. Diabetes 2011
325
8

Gene expression profiles of glomerular endothelial cells support their role in the glomerulopathy of diabetic mice.
Jia Fu, Chengguo Wei, Weijia Zhang, Detlef Schlondorff, Jinshan Wu, Minchao Cai, Wu He, Margaret H Baron, Peter Y Chuang, Zhihong Liu,[...]. Kidney Int 2018
36
19

Single-cell analysis reveals congruence between kidney organoids and human fetal kidney.
Alexander N Combes, Luke Zappia, Pei Xuan Er, Alicia Oshlack, Melissa H Little. Genome Med 2019
84
8

Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, Jose L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen,[...]. Science 2018
303
8

Genome-Wide Analysis of Wilms' Tumor 1-Controlled Gene Expression in Podocytes Reveals Key Regulatory Mechanisms.
Martin Kann, Sandrine Ettou, Youngsook L Jung, Maximilian O Lenz, Mary E Taglienti, Peter J Park, Bernhard Schermer, Thomas Benzing, Jordan A Kreidberg. J Am Soc Nephrol 2015
73
9

Understanding the kidney one cell at a time.
Jihwan Park, Chang Linda Liu, Junhyong Kim, Katalin Susztak. Kidney Int 2019
30
23

The mesangial cell revisited: no cell is an island.
Detlef Schlöndorff, Bernhard Banas. J Am Soc Nephrol 2009
263
8

Molecular determinants of nephron vascular specialization in the kidney.
David M Barry, Elizabeth A McMillan, Balvir Kunar, Raphael Lis, Tuo Zhang, Tyler Lu, Edward Daniel, Masataka Yokoyama, Jesus M Gomez-Salinero, Angara Sureshbabu,[...]. Nat Commun 2019
31
22

Renal-Tubule Epithelial Cell Nomenclature for Single-Cell RNA-Sequencing Studies.
Lihe Chen, Jevin Z Clark, Jonathan W Nelson, Brigitte Kaissling, David H Ellison, Mark A Knepper. J Am Soc Nephrol 2019
36
19

Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.
Yuhei Kirita, Haojia Wu, Kohei Uchimura, Parker C Wilson, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2020
89
8

Full-length RNA-seq from single cells using Smart-seq2.
Simone Picelli, Omid R Faridani, Asa K Björklund, Gösta Winberg, Sven Sagasser, Rickard Sandberg. Nat Protoc 2014
7

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
7

Defining the molecular character of the developing and adult kidney podocyte.
Eric W Brunskill, Kylie Georgas, Bree Rumballe, Melissa H Little, S Steven Potter. PLoS One 2011
92
7

Comparison of Glomerular and Podocyte mRNA Profiles in Streptozotocin-Induced Diabetes.
Jia Fu, Chengguo Wei, Kyung Lee, Weijia Zhang, Wu He, Peter Chuang, Zhihong Liu, John Cijiang He. J Am Soc Nephrol 2016
31
19

Diabetic Kidney Disease: Challenges, Progress, and Possibilities.
Radica Z Alicic, Michele T Rooney, Katherine R Tuttle. Clin J Am Soc Nephrol 2017
678
7

Parabiosis and single-cell RNA sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis.
Rafael Kramann, Flavia Machado, Haojia Wu, Tetsuro Kusaba, Konrad Hoeft, Rebekka K Schneider, Benjamin D Humphreys. JCI Insight 2018
42
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.