A citation-based method for searching scientific literature

Henrik Spåhr, Tiongsun Chia, James P Lingford, Stefan J Siira, Scott B Cohen, Aleksandra Filipovska, Oliver Rackham. Nat Commun 2018
Times Cited: 7







List of co-cited articles
22 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An artificial PPR scaffold for programmable RNA recognition.
Sandrine Coquille, Aleksandra Filipovska, Tiongsun Chia, Lional Rajappa, James P Lingford, Muhammad F M Razif, Stéphane Thore, Oliver Rackham. Nat Commun 2014
70
42

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.
Alice Barkan, Margarita Rojas, Sota Fujii, Aaron Yap, Yee Seng Chong, Charles S Bond, Ian Small. PLoS Genet 2012
316
42

Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.
Cuicui Shen, Delin Zhang, Zeyuan Guan, Yexing Liu, Zhao Yang, Yan Yang, Xiang Wang, Qiang Wang, QunXia Zhang, Shilong Fan,[...]. Nat Commun 2016
69
42

RNA processing in human mitochondria.
Maria I G Lopez Sanchez, Tim R Mercer, Stefan M K Davies, Anne-Marie J Shearwood, Karoline K A Nygård, Tara R Richman, John S Mattick, Oliver Rackham, Aleksandra Filipovska. Cell Cycle 2011
149
28

Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.
Aleksandra Filipovska, Oliver Rackham. RNA Biol 2013
32
28

The role of mammalian PPR domain proteins in the regulation of mitochondrial gene expression.
Oliver Rackham, Aleksandra Filipovska. Biochim Biophys Acta 2012
46
28

A universal code for RNA recognition by PUF proteins.
Aleksandra Filipovska, Muhammad F M Razif, Karoline K A Nygård, Oliver Rackham. Nat Chem Biol 2011
114
28

Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting.
Ganqiang Liu, Timothy R Mercer, Anne-Marie J Shearwood, Stefan J Siira, Moira E Hibbs, John S Mattick, Oliver Rackham, Aleksandra Filipovska. Cell Rep 2013
23
28

A census of human RNA-binding proteins.
Stefanie Gerstberger, Markus Hafner, Thomas Tuschl. Nat Rev Genet 2014
807
28

Modular recognition of nucleic acids by PUF, TALE and PPR proteins.
Aleksandra Filipovska, Oliver Rackham. Mol Biosyst 2012
50
28

Modular recognition of RNA by a human pumilio-homology domain.
Xiaoqiang Wang, Juanita McLachlan, Phillip D Zamore, Traci M Tanaka Hall. Cell 2002
355
28

Designer RNA-binding proteins: New tools for manipulating the transcriptome.
Aleksandra Filipovska, Oliver Rackham. RNA Biol 2011
28
28

Organelle transcriptomes: products of a deconstructed genome.
Ian D Small, Oliver Rackham, Aleksandra Filipovska. Curr Opin Microbiol 2013
39
28

Sequence-specific binding of single-stranded RNA: is there a code for recognition?
Sigrid D Auweter, Florian C Oberstrass, Frédéric H-T Allain. Nucleic Acids Res 2006
200
28

Hierarchical RNA Processing Is Required for Mitochondrial Ribosome Assembly.
Oliver Rackham, Jakob D Busch, Stanka Matic, Stefan J Siira, Irina Kuznetsova, Ilian Atanassov, Judith A Ermer, Anne-Marie J Shearwood, Tara R Richman, James B Stewart,[...]. Cell Rep 2016
59
28

A PUF family portrait: 3'UTR regulation as a way of life.
Marvin Wickens, David S Bernstein, Judith Kimble, Roy Parker. Trends Genet 2002
450
28


Imaging dynamics of endogenous mitochondrial RNA in single living cells.
Takeaki Ozawa, Yutaka Natori, Moritoshi Sato, Yoshio Umezawa. Nat Methods 2007
206
28

RNA-binding proteins: modular design for efficient function.
Bradley M Lunde, Claire Moore, Gabriele Varani. Nat Rev Mol Cell Biol 2007
696
28


Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants.
Yusuke Yagi, Shimpei Hayashi, Keiko Kobayashi, Takashi Hirayama, Takahiro Nakamura. PLoS One 2013
178
28

Structural basis for the modular recognition of single-stranded RNA by PPR proteins.
Ping Yin, Quanxiu Li, Chuangye Yan, Ying Liu, Junjie Liu, Feng Yu, Zheng Wang, Jiafu Long, Jianhua He, Hong-Wei Wang,[...]. Nature 2013
193
28

Hippo signaling regulates microprocessor and links cell-density-dependent miRNA biogenesis to cancer.
Masaki Mori, Robinson Triboulet, Morvarid Mohseni, Karin Schlegelmilch, Kriti Shrestha, Fernando D Camargo, Richard I Gregory. Cell 2014
229
14


Cancer genes and the pathways they control.
Bert Vogelstein, Kenneth W Kinzler. Nat Med 2004
14

Erlotinib.
Martin Steins, Michael Thomas, Michael Geißler. Recent Results Cancer Res 2018
7
14

Somatic mutations and losses of expression of microRNA regulation-related genes AGO2 and TNRC6A in gastric and colorectal cancers.
Min S Kim, Ji E Oh, Yoo R Kim, Sang W Park, Mi R Kang, Sung S Kim, Chang H Ahn, Nam J Yoo, Sug H Lee. J Pathol 2010
83
14


Argonaute2 is the catalytic engine of mammalian RNAi.
Jidong Liu, Michelle A Carmell, Fabiola V Rivas, Carolyn G Marsden, J Michael Thomson, Ji-Joon Song, Scott M Hammond, Leemor Joshua-Tor, Gregory J Hannon. Science 2004
14

Involvement of microRNA in AU-rich element-mediated mRNA instability.
Qing Jing, Shuang Huang, Sabine Guth, Tyler Zarubin, Andrea Motoyama, Jianming Chen, Franco Di Padova, Sheng-Cai Lin, Hermann Gram, Jiahuai Han. Cell 2005
643
14

Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
14


An overview of microRNAs.
Scott M Hammond. Adv Drug Deliv Rev 2015
653
14


miR-15 and miR-16 induce apoptosis by targeting BCL2.
Amelia Cimmino, George Adrian Calin, Muller Fabbri, Marilena V Iorio, Manuela Ferracin, Masayoshi Shimizu, Sylwia E Wojcik, Rami I Aqeilan, Simona Zupo, Mariella Dono,[...]. Proc Natl Acad Sci U S A 2005
14


The human RBPome: from genes and proteins to human disease.
Yaseswini Neelamraju, Seyedsasan Hashemikhabir, Sarath Chandra Janga. J Proteomics 2015
65
14

Targeted inhibition of oncogenic miR-21 maturation with designed RNA-binding proteins.
Yu Chen, Fan Yang, Lorena Zubovic, Tom Pavelitz, Wen Yang, Katherine Godin, Matthew Walker, Suxin Zheng, Paolo Macchi, Gabriele Varani. Nat Chem Biol 2016
25
14

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
14

Functional interplay between RNA-binding protein HuR and microRNAs.
Subramanya Srikantan, Kumiko Tominaga, Myriam Gorospe. Curr Protein Pept Sci 2012
122
14

A protein-RNA specificity code enables targeted activation of an endogenous human transcript.
Zachary T Campbell, Cary T Valley, Marvin Wickens. Nat Struct Mol Biol 2014
55
14

The impact of molecular targets in cancer drug development: major hurdles and future strategies.
Alexandra Hebar, Peter Valent, Edgar Selzer. Expert Rev Clin Pharmacol 2013
8
14

Human RISC couples microRNA biogenesis and posttranscriptional gene silencing.
Richard I Gregory, Thimmaiah P Chendrimada, Neil Cooch, Ramin Shiekhattar. Cell 2005
14

Visualization of nonengineered single mRNAs in living cells using genetically encoded fluorescent probes.
Toshimichi Yamada, Hideaki Yoshimura, Asumi Inaguma, Takeaki Ozawa. Anal Chem 2011
46
14

MicroRNA regulation by RNA-binding proteins and its implications for cancer.
Marieke van Kouwenhove, Martijn Kedde, Reuven Agami. Nat Rev Cancer 2011
445
14

Targeted translational regulation using the PUF protein family scaffold.
Amy Cooke, Andrew Prigge, Laura Opperman, Marvin Wickens. Proc Natl Acad Sci U S A 2011
56
14

In vitro and in vivo delivery of therapeutic proteins using cell penetrating peptides.
Azam Bolhassani, Behnaz Sadat Jafarzade, Golnaz Mardani. Peptides 2017
94
14

miR-519 suppresses tumor growth by reducing HuR levels.
Kotb Abdelmohsen, Mihee M Kim, Subramanya Srikantan, Evi M Mercken, Sarah E Brennan, Gerald M Wilson, Rafael de Cabo, Myriam Gorospe. Cell Cycle 2010
106
14

Regulation of epidermal growth factor receptor signaling in human cancer cells by microRNA-7.
Rebecca J Webster, Keith M Giles, Karina J Price, Priscilla M Zhang, John S Mattick, Peter J Leedman. J Biol Chem 2009
325
14

The role of MicroRNAs in human cancer.
Yong Peng, Carlo M Croce. Signal Transduct Target Ther 2016
715
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.