A citation-based method for searching scientific literature

Florian Krach, Ranjan Batra, Emily C Wheeler, Anthony Q Vu, Ruth Wang, Kasey Hutt, Stuart J Rabin, Michael W Baughn, Ryan T Libby, Sandra Diaz-Garcia, Jennifer Stauffer, Elaine Pirie, Shahram Saberi, Maria Rodriguez, Assael A Madrigal, Zacharias Kohl, Beate Winner, Gene W Yeo, John Ravits. Acta Neuropathol 2018
Times Cited: 36







List of co-cited articles
395 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Manuela Neumann, Deepak M Sampathu, Linda K Kwong, Adam C Truax, Matthew C Micsenyi, Thomas T Chou, Jennifer Bruce, Theresa Schuck, Murray Grossman, Christopher M Clark,[...]. Science 2006
47

Decoding ALS: from genes to mechanism.
J Paul Taylor, Robert H Brown, Don W Cleveland. Nature 2016
33

A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD.
Alan E Renton, Elisa Majounie, Adrian Waite, Javier Simón-Sánchez, Sara Rollinson, J Raphael Gibbs, Jennifer C Schymick, Hannu Laaksovirta, John C van Swieten, Liisa Myllykangas,[...]. Neuron 2011
30

Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43.
Magdalini Polymenidou, Clotilde Lagier-Tourenne, Kasey R Hutt, Stephanie C Huelga, Jacqueline Moran, Tiffany Y Liang, Shuo-Chien Ling, Eveline Sun, Edward Wancewicz, Curt Mazur,[...]. Nat Neurosci 2011
793
27

Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS.
Mariely DeJesus-Hernandez, Ian R Mackenzie, Bradley F Boeve, Adam L Boxer, Matt Baker, Nicola J Rutherford, Alexandra M Nicholson, NiCole A Finch, Heather Flynn, Jennifer Adamson,[...]. Neuron 2011
27

Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS.
Mercedes Prudencio, Veronique V Belzil, Ranjan Batra, Christian A Ross, Tania F Gendron, Luc J Pregent, Melissa E Murray, Karen K Overstreet, Amelia E Piazza-Johnston, Pamela Desaro,[...]. Nat Neurosci 2015
227
27

Premature polyadenylation-mediated loss of stathmin-2 is a hallmark of TDP-43-dependent neurodegeneration.
Ze'ev Melamed, Jone López-Erauskin, Michael W Baughn, Ouyang Zhang, Kevin Drenner, Ying Sun, Fernande Freyermuth, Moira A McMahon, Melinda S Beccari, Jon W Artates,[...]. Nat Neurosci 2019
147
27

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.
James R Tollervey, Tomaž Curk, Boris Rogelj, Michael Briese, Matteo Cereda, Melis Kayikci, Julian König, Tibor Hortobágyi, Agnes L Nishimura, Vera Zupunski,[...]. Nat Neurosci 2011
699
25

Sporadic ALS has compartment-specific aberrant exon splicing and altered cell-matrix adhesion biology.
Stuart J Rabin, Jae Mun Hugo Kim, Michael Baughn, Ryan T Libby, Young Joo Kim, Yuxin Fan, Randell T Libby, Albert La Spada, Brad Stone, John Ravits. Hum Mol Genet 2010
93
22

Converging mechanisms in ALS and FTD: disrupted RNA and protein homeostasis.
Shuo-Chien Ling, Magdalini Polymenidou, Don W Cleveland. Neuron 2013
986
22

TDP-43 pathology disrupts nuclear pore complexes and nucleocytoplasmic transport in ALS/FTD.
Ching-Chieh Chou, Yi Zhang, Mfon E Umoh, Spencer W Vaughan, Ileana Lorenzini, Feilin Liu, Melissa Sayegh, Paul G Donlin-Asp, Yu Han Chen, Duc M Duong,[...]. Nat Neurosci 2018
246
22

RNA Binding Antagonizes Neurotoxic Phase Transitions of TDP-43.
Jacob R Mann, Amanda M Gleixner, Jocelyn C Mauna, Edward Gomes, Michael R DeChellis-Marks, Patrick G Needham, Katie E Copley, Bryan Hurtle, Bede Portz, Noah J Pyles,[...]. Neuron 2019
200
22

Cytoplasmic TDP-43 De-mixing Independent of Stress Granules Drives Inhibition of Nuclear Import, Loss of Nuclear TDP-43, and Cell Death.
Fatima Gasset-Rosa, Shan Lu, Haiyang Yu, Cong Chen, Ze'ev Melamed, Lin Guo, James Shorter, Sandrine Da Cruz, Don W Cleveland. Neuron 2019
174
22

ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair.
Joseph R Klim, Luis A Williams, Francesco Limone, Irune Guerra San Juan, Brandi N Davis-Dusenbery, Daniel A Mordes, Aaron Burberry, Michael J Steinbaugh, Kanchana K Gamage, Rory Kirchner,[...]. Nat Neurosci 2019
152
22

Axonal transport of TDP-43 mRNA granules is impaired by ALS-causing mutations.
Nael H Alami, Rebecca B Smith, Monica A Carrasco, Luis A Williams, Christina S Winborn, Steve S W Han, Evangelos Kiskinis, Brett Winborn, Brian D Freibaum, Anderson Kanagaraj,[...]. Neuron 2014
394
19

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
19

TDP-43 repression of nonconserved cryptic exons is compromised in ALS-FTD.
Jonathan P Ling, Olga Pletnikova, Juan C Troncoso, Philip C Wong. Science 2015
240
19

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
19

Tar DNA binding protein-43 (TDP-43) associates with stress granules: analysis of cultured cells and pathological brain tissue.
Liqun Liu-Yesucevitz, Aylin Bilgutay, Yong-Jie Zhang, Tara Vanderweyde, Allison Citro, Tapan Mehta, Nava Zaarur, Ann McKee, Robert Bowser, Michael Sherman,[...]. PLoS One 2010
420
19

TDP-43 mutations in familial and sporadic amyotrophic lateral sclerosis.
Jemeen Sreedharan, Ian P Blair, Vineeta B Tripathi, Xun Hu, Caroline Vance, Boris Rogelj, Steven Ackerley, Jennifer C Durnall, Kelly L Williams, Emanuele Buratti,[...]. Science 2008
19

The C9orf72 repeat expansion disrupts nucleocytoplasmic transport.
Ke Zhang, Christopher J Donnelly, Aaron R Haeusler, Jonathan C Grima, James B Machamer, Peter Steinwald, Elizabeth L Daley, Sean J Miller, Kathleen M Cunningham, Svetlana Vidensky,[...]. Nature 2015
607
19

Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons.
Elaine Y Liu, Jenny Russ, Christopher P Cali, Jessica M Phan, Alexandre Amlie-Wolf, Edward B Lee. Cell Rep 2019
61
19

Phosphorylation of TAR DNA-binding Protein of 43 kDa (TDP-43) by Truncated Casein Kinase 1δ Triggers Mislocalization and Accumulation of TDP-43.
Takashi Nonaka, Genjiro Suzuki, Yoshinori Tanaka, Fuyuki Kametani, Shinobu Hirai, Haruo Okado, Tomoyuki Miyashita, Minoru Saitoe, Haruhiko Akiyama, Hisao Masai,[...]. J Biol Chem 2016
67
16

Structural determinants of the cellular localization and shuttling of TDP-43.
Youhna M Ayala, Paola Zago, Andrea D'Ambrogio, Ya-Fei Xu, Leonard Petrucelli, Emanuele Buratti, Francisco E Baralle. J Cell Sci 2008
366
16

Phosphorylated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Masato Hasegawa, Tetsuaki Arai, Takashi Nonaka, Fuyuki Kametani, Mari Yoshida, Yoshio Hashizume, Thomas G Beach, Emanuele Buratti, Francisco Baralle, Mitsuya Morita,[...]. Ann Neurol 2008
477
16

Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis.
D R Rosen, T Siddique, D Patterson, D A Figlewicz, P Sapp, A Hentati, D Donaldson, J Goto, J P O'Regan, H X Deng. Nature 1993
16

Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS.
Hong Joo Kim, Nam Chul Kim, Yong-Dong Wang, Emily A Scarborough, Jennifer Moore, Zamia Diaz, Kyle S MacLea, Brian Freibaum, Songqing Li, Amandine Molliex,[...]. Nature 2013
919
16

Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.
Aude Nicolas, Kevin P Kenna, Alan E Renton, Nicola Ticozzi, Faraz Faghri, Ruth Chia, Janice A Dominov, Brendan J Kenna, Mike A Nalls, Pamela Keagle,[...]. Neuron 2018
281
16

TDP-43 gains function due to perturbed autoregulation in a Tardbp knock-in mouse model of ALS-FTD.
Matthew A White, Eosu Kim, Amanda Duffy, Robert Adalbert, Benjamin U Phillips, Owen M Peters, Jodie Stephenson, Sujeong Yang, Francesca Massenzio, Ziqiang Lin,[...]. Nat Neurosci 2018
108
13

Colocalization of transactivation-responsive DNA-binding protein 43 and huntingtin in inclusions of Huntington disease.
Claudia Schwab, Tetsuaki Arai, Masato Hasegawa, Sheng Yu, Patrick L McGeer. J Neuropathol Exp Neurol 2008
166
13

Targeting TDP-43 phosphorylation by Casein Kinase-1δ inhibitors: a novel strategy for the treatment of frontotemporal dementia.
Carolina Alquezar, Irene G Salado, Ana de la Encarnación, Daniel I Pérez, Fermín Moreno, Carmen Gil, Adolfo López de Munain, Ana Martínez, Ángeles Martín-Requero. Mol Neurodegener 2016
33
15

Phosphorylation of S409/410 of TDP-43 is a consistent feature in all sporadic and familial forms of TDP-43 proteinopathies.
Manuela Neumann, Linda K Kwong, Edward B Lee, Elisabeth Kremmer, Andrew Flatley, Yan Xu, Mark S Forman, Dirk Troost, Hans A Kretzschmar, John Q Trojanowski,[...]. Acta Neuropathol 2009
350
13

Functional recovery in new mouse models of ALS/FTLD after clearance of pathological cytoplasmic TDP-43.
Adam K Walker, Krista J Spiller, Guanghui Ge, Allen Zheng, Yan Xu, Melissa Zhou, Kalyan Tripathy, Linda K Kwong, John Q Trojanowski, Virginia M-Y Lee. Acta Neuropathol 2015
124
13

TDP-43 transgenic mice develop spastic paralysis and neuronal inclusions characteristic of ALS and frontotemporal lobar degeneration.
Hans Wils, Gernot Kleinberger, Jonathan Janssens, Sandra Pereson, Geert Joris, Ivy Cuijt, Veerle Smits, Chantal Ceuterick-de Groote, Christine Van Broeckhoven, Samir Kumar-Singh. Proc Natl Acad Sci U S A 2010
383
13

The inhibition of TDP-43 mitochondrial localization blocks its neuronal toxicity.
Wenzhang Wang, Luwen Wang, Junjie Lu, Sandra L Siedlak, Hisashi Fujioka, Jingjing Liang, Sirui Jiang, Xiaopin Ma, Zhen Jiang, Edroaldo Lummertz da Rocha,[...]. Nat Med 2016
188
13

Wild-type human TDP-43 expression causes TDP-43 phosphorylation, mitochondrial aggregation, motor deficits, and early mortality in transgenic mice.
Ya-Fei Xu, Tania F Gendron, Yong-Jie Zhang, Wen-Lang Lin, Simon D'Alton, Hong Sheng, Monica Castanedes Casey, Jimei Tong, Joshua Knight, Xin Yu,[...]. J Neurosci 2010
358
13

Modifiers of C9orf72 dipeptide repeat toxicity connect nucleocytoplasmic transport defects to FTD/ALS.
Ana Jovičić, Jerome Mertens, Steven Boeynaems, Elke Bogaert, Noori Chai, Shizuka B Yamada, Joseph W Paul, Shuying Sun, Joseph R Herdy, Gregor Bieri,[...]. Nat Neurosci 2015
395
13

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
13

Pathways disrupted in human ALS motor neurons identified through genetic correction of mutant SOD1.
Evangelos Kiskinis, Jackson Sandoe, Luis A Williams, Gabriella L Boulting, Rob Moccia, Brian J Wainger, Steve Han, Theodore Peng, Sebastian Thams, Shravani Mikkilineni,[...]. Cell Stem Cell 2014
274
13

TDP-43 is a component of ubiquitin-positive tau-negative inclusions in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Tetsuaki Arai, Masato Hasegawa, Haruhiko Akiyama, Kenji Ikeda, Takashi Nonaka, Hiroshi Mori, David Mann, Kuniaki Tsuchiya, Mari Yoshida, Yoshio Hashizume,[...]. Biochem Biophys Res Commun 2006
13


Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules.
Sebastian Markmiller, Sahar Soltanieh, Kari L Server, Raymond Mak, Wenhao Jin, Mark Y Fang, En-Ching Luo, Florian Krach, Dejun Yang, Anindya Sen,[...]. Cell 2018
385
13

Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics.
Steven Boeynaems, Elke Bogaert, Denes Kovacs, Albert Konijnenberg, Evy Timmerman, Alex Volkov, Mainak Guharoy, Mathias De Decker, Tom Jaspers, Veronica H Ryan,[...]. Mol Cell 2017
279
13

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13

TDP-43 is directed to stress granules by sorbitol, a novel physiological osmotic and oxidative stressor.
Colleen M Dewey, Basar Cenik, Chantelle F Sephton, Daniel R Dries, Paul Mayer, Shannon K Good, Brett A Johnson, Joachim Herz, Gang Yu. Mol Cell Biol 2011
230
13

Functional and dynamic polymerization of the ALS-linked protein TDP-43 antagonizes its pathologic aggregation.
Tariq Afroz, Eva-Maria Hock, Patrick Ernst, Chiara Foglieni, Melanie Jambeau, Larissa A B Gilhespy, Florent Laferriere, Zuzanna Maniecka, Andreas Plückthun, Peer Mittl,[...]. Nat Commun 2017
151
13

ALS-linked TDP-43 mutations produce aberrant RNA splicing and adult-onset motor neuron disease without aggregation or loss of nuclear TDP-43.
Eveline S Arnold, Shuo-Chien Ling, Stephanie C Huelga, Clotilde Lagier-Tourenne, Magdalini Polymenidou, Dara Ditsworth, Holly B Kordasiewicz, Melissa McAlonis-Downes, Oleksandr Platoshyn, Philippe A Parone,[...]. Proc Natl Acad Sci U S A 2013
274
11

TDP-43 regulates its mRNA levels through a negative feedback loop.
Youhna M Ayala, Laura De Conti, S Eréndira Avendaño-Vázquez, Ashish Dhir, Maurizio Romano, Andrea D'Ambrogio, James Tollervey, Jernej Ule, Marco Baralle, Emanuele Buratti,[...]. EMBO J 2011
362
11

Pathological TDP-43 distinguishes sporadic amyotrophic lateral sclerosis from amyotrophic lateral sclerosis with SOD1 mutations.
Ian R A Mackenzie, Eileen H Bigio, Paul G Ince, Felix Geser, Manuela Neumann, Nigel J Cairns, Linda K Kwong, Mark S Forman, John Ravits, Heather Stewart,[...]. Ann Neurol 2007
669
11

El Escorial revisited: revised criteria for the diagnosis of amyotrophic lateral sclerosis.
B R Brooks, R G Miller, M Swash, T L Munsat. Amyotroph Lateral Scler Other Motor Neuron Disord 2000
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.