A citation-based method for searching scientific literature

Philip Trapp, Rodrigo Echeveste, Claudius Gros. Sci Rep 2018
Times Cited: 3







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.
John D Cahoy, Ben Emery, Amit Kaushal, Lynette C Foo, Jennifer L Zamanian, Karen S Christopherson, Yi Xing, Jane L Lubischer, Paul A Krieg, Sergey A Krupenko,[...]. J Neurosci 2008
33

Microglia in Alzheimer's disease.
David V Hansen, Jesse E Hanson, Morgan Sheng. J Cell Biol 2018
386
33


Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells.
Steven A Sloan, Spyros Darmanis, Nina Huber, Themasap A Khan, Fikri Birey, Christine Caneda, Richard Reimer, Stephen R Quake, Ben A Barres, Sergiu P Paşca. Neuron 2017
204
33

Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development.
Cleber A Trujillo, Richard Gao, Priscilla D Negraes, Jing Gu, Justin Buchanan, Sebastian Preissl, Allen Wang, Wei Wu, Gabriel G Haddad, Isaac A Chaim,[...]. Cell Stem Cell 2019
148
33

Presenilin-1 mutations and Alzheimer's disease.
Raymond J Kelleher, Jie Shen. Proc Natl Acad Sci U S A 2017
75
33

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.
Steffen Durinck, Paul T Spellman, Ewan Birney, Wolfgang Huber. Nat Protoc 2009
33

A neutral model of transcriptome evolution.
Philipp Khaitovich, Gunter Weiss, Michael Lachmann, Ines Hellmann, Wolfgang Enard, Bjoern Muetzel, Ute Wirkner, Wilhelm Ansorge, Svante Pääbo. PLoS Biol 2004
253
33

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.
Ye Zhang, Kenian Chen, Steven A Sloan, Mariko L Bennett, Anja R Scholze, Sean O'Keeffe, Hemali P Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch,[...]. J Neurosci 2014
33

The evolution of gene expression levels in mammalian organs.
David Brawand, Magali Soumillon, Anamaria Necsulea, Philippe Julien, Gábor Csárdi, Patrick Harrigan, Manuela Weier, Angélica Liechti, Ayinuer Aximu-Petri, Martin Kircher,[...]. Nature 2011
671
33

Initial sequencing and comparative analysis of the mouse genome.
Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An,[...]. Nature 2002
33

Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways.
Jeremy A Miller, Steve Horvath, Daniel H Geschwind. Proc Natl Acad Sci U S A 2010
295
33

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.
Michael J Gandal, Jillian R Haney, Neelroop N Parikshak, Virpi Leppa, Gokul Ramaswami, Chris Hartl, Andrew J Schork, Vivek Appadurai, Alfonso Buil, Thomas M Werge,[...]. Science 2018
398
33

Microglia innately develop within cerebral organoids.
Paul R Ormel, Renata Vieira de Sá, Emma J van Bodegraven, Henk Karst, Oliver Harschnitz, Marjolein A M Sneeboer, Lill Eva Johansen, Roland E van Dijk, Nicky Scheefhals, Amber Berdenis van Berlekom,[...]. Nat Commun 2018
166
33

Uniquely hominid features of adult human astrocytes.
Nancy Ann Oberheim, Takahiro Takano, Xiaoning Han, Wei He, Jane H C Lin, Fushun Wang, Qiwu Xu, Jeffrey D Wyatt, Webster Pilcher, Jeffrey G Ojemann,[...]. J Neurosci 2009
633
33


Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders.
Neelroop N Parikshak, Michael J Gandal, Daniel H Geschwind. Nat Rev Genet 2015
208
33

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
Stephan J Sanders, Xin He, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Kaitlin E Samocha, A Ercument Cicek, Michael T Murtha, Vanessa H Bal, Somer L Bishop, Shan Dong,[...]. Neuron 2015
601
33

OrthoClust: an orthology-based network framework for clustering data across multiple species.
Koon-Kiu Yan, Daifeng Wang, Joel Rozowsky, Henry Zheng, Chao Cheng, Mark Gerstein. Genome Biol 2014
21
33

Functional and evolutionary implications of gene orthology.
Toni Gabaldón, Eugene V Koonin. Nat Rev Genet 2013
259
33


Human-specific transcriptional networks in the brain.
Genevieve Konopka, Tara Friedrich, Jeremy Davis-Turak, Kellen Winden, Michael C Oldham, Fuying Gao, Leslie Chen, Guang-Zhong Wang, Rui Luo, Todd M Preuss,[...]. Neuron 2012
148
33

Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
33

Integrative network analysis of nineteen brain regions identifies molecular signatures and networks underlying selective regional vulnerability to Alzheimer's disease.
Minghui Wang, Panos Roussos, Andrew McKenzie, Xianxiao Zhou, Yuji Kajiwara, Kristen J Brennand, Gabriele C De Luca, John F Crary, Patrizia Casaccia, Joseph D Buxbaum,[...]. Genome Med 2016
107
33

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
33

Disease-specific changes in regulator of G-protein signaling 4 (RGS4) expression in schizophrenia.
K Mirnics, F A Middleton, G D Stanwood, D A Lewis, P Levitt. Mol Psychiatry 2001
339
33

Is my network module preserved and reproducible?
Peter Langfelder, Rui Luo, Michael C Oldham, Steve Horvath. PLoS Comput Biol 2011
443
33

Glia Open Access Database (GOAD): A comprehensive gene expression encyclopedia of glia cells in health and disease.
Inge R Holtman, Michiel Noback, Marieke Bijlsma, Kim N Duong, Marije A van der Geest, Peer T Ketelaars, Nieske Brouwer, Ilia D Vainchtein, Bart J L Eggen, Hendrikus W G M Boddeke. Glia 2015
37
33

Functional organization of the transcriptome in human brain.
Michael C Oldham, Genevieve Konopka, Kazuya Iwamoto, Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H Geschwind. Nat Neurosci 2008
493
33

Mouse models of Alzheimer's disease.
Alicia M Hall, Erik D Roberson. Brain Res Bull 2012
156
33



Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.
J Gray Camp, Farhath Badsha, Marta Florio, Sabina Kanton, Tobias Gerber, Michaela Wilsch-Bräuninger, Eric Lewitus, Alex Sykes, Wulf Hevers, Madeline Lancaster,[...]. Proc Natl Acad Sci U S A 2015
416
33

Phylogenomic distance method for analyzing transcriptome evolution based on RNA-seq data.
Xun Gu, Yangyun Zou, Wei Huang, Libing Shen, Zebulun Arendsee, Zhixi Su. Genome Biol Evol 2013
11
33

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
310
33

Molecular and cellular reorganization of neural circuits in the human lineage.
André M M Sousa, Ying Zhu, Mary Ann Raghanti, Robert R Kitchen, Marco Onorati, Andrew T N Tebbenkamp, Bernardo Stutz, Kyle A Meyer, Mingfeng Li, Yuka Imamura Kawasawa,[...]. Science 2017
86
33

A quantitative framework to evaluate modeling of cortical development by neural stem cells.
Jason L Stein, Luis de la Torre-Ubieta, Yuan Tian, Neelroop N Parikshak, Israel A Hernández, Maria C Marchetto, Dylan K Baker, Daning Lu, Cassidy R Hinman, Jennifer K Lowe,[...]. Neuron 2014
113
33

Variation among intact tissue samples reveals the core transcriptional features of human CNS cell classes.
Kevin W Kelley, Hiromi Nakao-Inoue, Anna V Molofsky, Michael C Oldham. Nat Neurosci 2018
69
33

Organoid single-cell genomic atlas uncovers human-specific features of brain development.
Sabina Kanton, Michael James Boyle, Zhisong He, Malgorzata Santel, Anne Weigert, Fátima Sanchís-Calleja, Patricia Guijarro, Leila Sidow, Jonas Simon Fleck, Dingding Han,[...]. Nature 2019
144
33

Modeling the Evolution of Human Brain Development Using Organoids.
Sydney Keaton Muchnik, Belen Lorente-Galdos, Gabriel Santpere, Nenad Sestan. Cell 2019
9
33

A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels.
Gianni Monaco, Sipko van Dam, João Luis Casal Novo Ribeiro, Anis Larbi, João Pedro de Magalhães. BMC Evol Biol 2015
36
33

Individual brain organoids reproducibly form cell diversity of the human cerebral cortex.
Silvia Velasco, Amanda J Kedaigle, Sean K Simmons, Allison Nash, Marina Rocha, Giorgia Quadrato, Bruna Paulsen, Lan Nguyen, Xian Adiconis, Aviv Regev,[...]. Nature 2019
225
33

Cellular scaling rules for rodent brains.
Suzana Herculano-Houzel, Bruno Mota, Roberto Lent. Proc Natl Acad Sci U S A 2006
232
33




TREM2 R47H variant as a risk factor for early-onset Alzheimer's disease.
Cyril Pottier, David Wallon, Stephane Rousseau, Anne Rovelet-Lecrux, Anne-Claire Richard, Adeline Rollin-Sillaire, Thierry Frebourg, Dominique Campion, Didier Hannequin. J Alzheimers Dis 2013
106
33

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
33

Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.
Ye Zhang, Steven A Sloan, Laura E Clarke, Christine Caneda, Colton A Plaza, Paul D Blumenthal, Hannes Vogel, Gary K Steinberg, Michael S B Edwards, Gordon Li,[...]. Neuron 2016
783
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.