A citation-based method for searching scientific literature

Zhongliang Zhao, Nevcin Sentürk, Chenlin Song, Ingrid Grummt. Genes Dev 2018
Times Cited: 58







List of co-cited articles
765 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Quiescence-induced LncRNAs trigger H4K20 trimethylation and transcriptional silencing.
Holger Bierhoff, Marcel Andre Dammert, David Brocks, Silvia Dambacher, Gunnar Schotta, Ingrid Grummt. Mol Cell 2014
100
41

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.
Kerstin-Maike Schmitz, Christine Mayer, Anna Postepska, Ingrid Grummt. Genes Dev 2010
352
34

Intergenic transcripts regulate the epigenetic state of rRNA genes.
Christine Mayer, Kerstin-Maike Schmitz, Junwei Li, Ingrid Grummt, Raffaella Santoro. Mol Cell 2006
237
31

lncRNA-Induced Nucleosome Repositioning Reinforces Transcriptional Repression of rRNA Genes upon Hypotonic Stress.
Zhongliang Zhao, Marcel Andre Dammert, Ingrid Grummt, Holger Bierhoff. Cell Rep 2016
40
45

Heat shock represses rRNA synthesis by inactivation of TIF-IA and lncRNA-dependent changes in nucleosome positioning.
Zhongliang Zhao, Marcel A Dammert, Sven Hoppe, Holger Bierhoff, Ingrid Grummt. Nucleic Acids Res 2016
41
41


Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes.
H Bierhoff, K Schmitz, F Maass, J Ye, I Grummt. Cold Spring Harb Symp Quant Biol 2010
74
24

MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures.
Tanmoy Mondal, Santhilal Subhash, Roshan Vaid, Stefan Enroth, Sireesha Uday, Björn Reinius, Sanhita Mitra, Arif Mohammed, Alva Rani James, Emily Hoberg,[...]. Nat Commun 2015
415
22

LncRNA Khps1 Regulates Expression of the Proto-oncogene SPHK1 via Triplex-Mediated Changes in Chromatin Structure.
Anna Postepska-Igielska, Alena Giwojna, Lital Gasri-Plotnitsky, Nina Schmitt, Annabelle Dold, Doron Ginsberg, Ingrid Grummt. Mol Cell 2015
169
22

SLERT Regulates DDX21 Rings Associated with Pol I Transcription.
Yu-Hang Xing, Run-Wen Yao, Yang Zhang, Chun-Jie Guo, Shan Jiang, Guang Xu, Rui Dong, Li Yang, Ling-Ling Chen. Cell 2017
140
20


PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation.
Valerie Bríd O'Leary, Saak Victor Ovsepian, Laura Garcia Carrascosa, Fabian Andreas Buske, Vanja Radulovic, Maximilian Niyazi, Simone Moertl, Matt Trau, Michael John Atkinson, Nataša Anastasov. Cell Rep 2015
135
18

lncRNA maturation to initiate heterochromatin formation in the nucleolus is required for exit from pluripotency in ESCs.
Nataša Savić, Dominik Bär, Sergio Leone, Sandra C Frommel, Fabienne A Weber, Eva Vollenweider, Elena Ferrari, Urs Ziegler, Andres Kaech, Olga Shakhova,[...]. Cell Stem Cell 2014
89
18

RNA-DNA Triplex Formation by Long Noncoding RNAs.
Yue Li, Junetha Syed, Hiroshi Sugiyama. Cell Chem Biol 2016
127
17

The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse.
Phillip Grote, Lars Wittler, David Hendrix, Frederic Koch, Sandra Währisch, Arica Beisaw, Karol Macura, Gaby Bläss, Manolis Kellis, Martin Werber,[...]. Dev Cell 2013
678
17

Alu element-containing RNAs maintain nucleolar structure and function.
Maïwen Caudron-Herger, Teresa Pankert, Jeanette Seiler, Attila Németh, Renate Voit, Ingrid Grummt, Karsten Rippe. EMBO J 2015
92
17

Nucleolar RNA polymerase II drives ribosome biogenesis.
Karan J Abraham, Negin Khosraviani, Janet N Y Chan, Aparna Gorthi, Anas Samman, Dorothy Y Zhao, Miling Wang, Michael Bokros, Elva Vidya, Lauren A Ostrowski,[...]. Nature 2020
69
17

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
15

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
980
15

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
15

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
15

Intergenic transcripts originating from a subclass of ribosomal DNA repeats silence ribosomal RNA genes in trans.
Raffaella Santoro, Kerstin-Maike Schmitz, Juan Sandoval, Ingrid Grummt. EMBO Rep 2010
78
15

Environmental cues induce a long noncoding RNA-dependent remodeling of the nucleolus.
Mathieu D Jacob, Timothy E Audas, James Uniacke, Laura Trinkle-Mulcahy, Stephen Lee. Mol Biol Cell 2013
66
13

The nucleolus under stress.
Séverine Boulon, Belinda J Westman, Saskia Hutten, François-Michel Boisvert, Angus I Lamond. Mol Cell 2010
657
13

A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival.
Karen Yap, Svetlana Mukhina, Gen Zhang, Jason S C Tan, Hong Sheng Ong, Eugene V Makeyev. Mol Cell 2018
68
13

The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation.
Marie Kalwa, Sonja Hänzelmann, Sabrina Otto, Chao-Chung Kuo, Julia Franzen, Sylvia Joussen, Eduardo Fernandez-Rebollo, Björn Rath, Carmen Koch, Andrea Hofmann,[...]. Nucleic Acids Res 2016
101
13

Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data.
Fabian A Buske, Denis C Bauer, John S Mattick, Timothy L Bailey. Genome Res 2012
134
13

Isolation and genome-wide characterization of cellular DNA:RNA triplex structures.
Nevcin Sentürk Cetin, Chao-Chung Kuo, Teodora Ribarska, Ronghui Li, Ivan G Costa, Ingrid Grummt. Nucleic Acids Res 2019
40
20

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
13

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
Claudia Carrieri, Laura Cimatti, Marta Biagioli, Anne Beugnet, Silvia Zucchelli, Stefania Fedele, Elisa Pesce, Isidre Ferrer, Licio Collavin, Claudio Santoro,[...]. Nature 2012
661
13

The multifunctional nucleolus.
François-Michel Boisvert, Silvana van Koningsbruggen, Joaquín Navascués, Angus I Lamond. Nat Rev Mol Cell Biol 2007
13

Activity dependent LoNA regulates translation by coordinating rRNA transcription and methylation.
Dingfeng Li, Juan Zhang, Ming Wang, Xiaohui Li, Huarui Gong, Huiping Tang, Lin Chen, Lili Wan, Qiang Liu. Nat Commun 2018
52
15

The chromatin remodeling complex NuRD establishes the poised state of rRNA genes characterized by bivalent histone modifications and altered nucleosome positions.
Wenbing Xie, Te Ling, Yonggang Zhou, Weijun Feng, Qiaoyun Zhu, Henk G Stunnenberg, Ingrid Grummt, Wei Tao. Proc Natl Acad Sci U S A 2012
88
13


Regulation of ubiquitin ligase dynamics by the nucleolus.
Karim Mekhail, Mireille Khacho, Amanda Carrigan, Robert R J Hache, Lakshman Gunaratnam, Stephen Lee. J Cell Biol 2005
67
12

Stress-Induced Low Complexity RNA Activates Physiological Amyloidogenesis.
Miling Wang, Xianzun Tao, Mathieu D Jacob, Clayton A Bennett, J J David Ho, Mark L Gonzalgo, Timothy E Audas, Stephen Lee. Cell Rep 2018
47
14

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
287
12


The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats.
Claudio Guetg, Philipp Lienemann, Valentina Sirri, Ingrid Grummt, Danièle Hernandez-Verdun, Michael O Hottiger, Martin Fussenegger, Raffaella Santoro. EMBO J 2010
130
12

Epigenetic control of RNA polymerase I transcription in mammalian cells.
Ingrid Grummt, Gernot Längst. Biochim Biophys Acta 2013
95
12

Location of ribosomal DNA in the human chromosome complement.
A S Henderson, D Warburton, K C Atwood. Proc Natl Acad Sci U S A 1972
537
12

pRNA: NoRC-associated RNA of rRNA operons.
Stefanie Wehner, Anja K Dörrich, Philipp Ciba, Annegret Wilde, Manja Marz. RNA Biol 2014
14
50

Inheritance of silent rDNA chromatin is mediated by PARP1 via noncoding RNA.
Claudio Guetg, Fabian Scheifele, Florian Rosenthal, Michael O Hottiger, Raffaella Santoro. Mol Cell 2012
112
10

Dynamic regulation of nucleolar architecture.
Attila Németh, Ingrid Grummt. Curr Opin Cell Biol 2018
60
10

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.
Ci Chu, Kun Qu, Franklin L Zhong, Steven E Artandi, Howard Y Chang. Mol Cell 2011
870
10

Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins.
Sungyul Lee, Florian Kopp, Tsung-Cheng Chang, Anupama Sataluri, Beibei Chen, Sushama Sivakumar, Hongtao Yu, Yang Xie, Joshua T Mendell. Cell 2016
516
10

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya,[...]. Mol Cell 2010
10

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
10

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
10

The landscape of long noncoding RNAs in the human transcriptome.
Matthew K Iyer, Yashar S Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R Barrette, John R Prensner, Joseph R Evans, Shuang Zhao,[...]. Nat Genet 2015
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.