A citation-based method for searching scientific literature

Chrisanthy Vlachakis, Konstantina Dragoumani, Sofia Raftopoulou, Meropi Mantaiou, Louis Papageorgiou, Spyridon Champeris Tsaniras, Vasileios Megalooikonomou, Dimitrios Vlachakis. In Vivo 2018
Times Cited: 3







List of co-cited articles
48 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A comprehensive phylogenetic analysis of deadenylases.
Athanasia Pavlopoulou, Dimitrios Vlachakis, Nikolaos A A Balatsos, Sophia Kossida. Evol Bioinform Online 2013
10
66


Notch signaling and ageing.
Eleftheria Polychronidou, Dimitrios Vlachakis, Panayiotis Vlamos, Marc Baumann, Sophia Kossida. Adv Exp Med Biol 2015
9
66

An updated evolutionary study of Flaviviridae NS3 helicase and NS5 RNA-dependent RNA polymerase reveals novel invariable motifs as potential pharmacological targets.
Louis Papageorgiou, Styliani Loukatou, Kossida Sofia, Dimitrios Maroulis, Dimitrios Vlachakis. Mol Biosyst 2016
16
66

Functional Toll-Like Receptor 9 Expression and CXCR3 Ligand Release in Pulmonary Sarcoidosis.
Jasmin Schnerch, Antje Prasse, Dimitrios Vlachakis, Kathrin L Schuchardt, Dmitri V Pechkovsky, Torsten Goldmann, Karoline I Gaede, Joachim Müller-Quernheim, Gernot Zissel. Am J Respir Cell Mol Biol 2016
17
66

Directed evolution of Tau class glutathione transferases reveals a site that regulates catalytic efficiency and masks co-operativity.
Irine Axarli, Abdi W Muleta, Dimitrios Vlachakis, Sophia Kossida, Georgia Kotzia, Anastasios Maltezos, Prathusha Dhavala, Anastassios C Papageorgiou, Nikolaos E Labrou. Biochem J 2016
15
66

Competitive inhibition of human poly(A)-specific ribonuclease (PARN) by synthetic fluoro-pyranosyl nucleosides.
Nikolaos A A Balatsos, Dimitrios Vlachakis, Panagiotis Maragozidis, Stella Manta, Dimitrios Anastasakis, Athanasios Kyritsis, Metaxia Vlassi, Dimitri Komiotis, Constantinos Stathopoulos. Biochemistry 2009
23
66

Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit.
Dimitrios Vlachakis, Dimosthenis Tsagrasoulis, Vasileios Megalooikonomou, Sophia Kossida. Bioinformatics 2013
23
66

IMGT/Collier-de-Perles: a two-dimensional visualization tool for amino acid domain sequences.
Dimitrios Vlachakis, Christos Feidakis, Vasileios Megalooikonomou, Sophia Kossida. Theor Biol Med Model 2013
7
66

DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit.
Dimitrios Vlachakis, Paraskevas Fakourelis, Vasileios Megalooikonomou, Christos Makris, Sophia Kossida. PeerJ 2015
11
66

Silencing motifs in the Clr2 protein from fission yeast, Schizosaccharomyces pombe.
Daniel Steinhauf, Alejandro Rodriguez, Dimitrios Vlachakis, Gordon Virgo, Vladimir Maksimov, Carolina Kristell, Ida Olsson, Tomas Linder, Sophia Kossida, Erik Bongcam-Rudloff,[...]. PLoS One 2014
6
66

Antiviral Stratagems Against HIV-1 Using RNA Interference (RNAi) Technology.
Dimitrios Vlachakis, Georgia Tsiliki, Athanasia Pavlopoulou, Maria G Roubelakis, Spyridon Champeris Tsaniras, Sophia Kossida. Evol Bioinform Online 2013
21
66

PubChem Substance and Compound databases.
Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A Shoemaker,[...]. Nucleic Acids Res 2016
66

On integrating multi-experiment microarray data.
Georgia Tsiliki, Dimitrios Vlachakis, Sophia Kossida. Philos Trans A Math Phys Eng Sci 2014
3
66

Functional characterization of two novel germline mutations of the KCNJ5 gene in hypertensive patients without primary aldosteronism but with ACTH-dependent aldosterone hypersecretion.
Amalia Sertedaki, Athina Markou, Dimitrios Vlachakis, Sophia Kossida, Emilie Campanac, Dax A Hoffman, Maria De La Luz Sierra, Paraskevi Xekouki, Constantine A Stratakis, Gregory Kaltsas,[...]. Clin Endocrinol (Oxf) 2016
12
66


Delineation of the functional and structural properties of the glutathione transferase family from the plant pathogen Erwinia carotovora.
Christina Theoharaki, Evangelia Chronopoulou, Dimitrios Vlachakis, Farid S Ataya, Panagiotis Giannopoulos, Sofia Maurikou, Katholiki Skopelitou, Anastassios C Papageorgiou, Nikolaos E Labrou. Funct Integr Genomics 2019
4
66

Structure-based design and application of a nucleotide coenzyme mimetic ligand: Application to the affinity purification of nucleotide dependent enzymes.
Marigianna Marinou, Dimitrios Platis, Farid S Ataya, Evangelia Chronopoulou, Dimitrios Vlachakis, Nikolaos E Labrou. J Chromatogr A 2018
10
66

EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation.
Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Vasileios Megalooikonomou, Nikos Paragios, Evangelia I Zacharaki. PeerJ 2018
20
66

Antibody Drug Conjugate bioinformatics: drug delivery through the letterbox.
Dimitrios Vlachakis, Sophia Kossida. Comput Math Methods Med 2013
5
66

Phosphorylation of the arginine/serine repeats of lamin B receptor by SRPK1-insights from molecular dynamics simulations.
Diamantis Sellis, Victoria Drosou, Dimitrios Vlachakis, Nikolas Voukkalis, Thomas Giannakouros, Metaxia Vlassi. Biochim Biophys Acta 2012
25
66

Molecular modelling study of the 3D structure of the bovine viral diarrhea virus (BVDV) helicase.
Andrea Brancale, Chrisanthy Vlachaki, Dimitrios Vlachakis. In Silico Biol 2008
6
66

3D molecular modeling and evolutionary study of the Trypanosoma brucei DNA Topoisomerase IB, as a new emerging pharmacological target.
Dimitrios Vlachakis, Athanasia Pavlopoulou, Maria G Roubelakis, Christos Feidakis, Nikolaos P Anagnou, Sophia Kossida. Genomics 2014
8
66

Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics.
Dimitrios Vlachakis, Athanasia Pavlopoulou, Dorothea Kazazi, Sophia Kossida. Gene 2013
4
66

A motif within the armadillo repeat of Parkinson's-linked LRRK2 interacts with FADD to hijack the extrinsic death pathway.
Nasia Antoniou, Dimitrios Vlachakis, Anna Memou, Emmanouela Leandrou, Polytimi-Eleni Valkimadi, Katerina Melachroinou, Diane B Re, Serge Przedborski, William T Dauer, Leonidas Stefanis,[...]. Sci Rep 2018
16
66

Computational Construction of Antibody-Drug Conjugates Using Surface Lysines as the Antibody Conjugation Site and a Non-cleavable Linker.
Arianna Filntisi, Dimitrios Vlachakis, George K Matsopoulos, Sophia Kossida. Cancer Inform 2014
5
66

Discovery of a novel HCV helicase inhibitor by a de novo drug design approach.
Sahar Kandil, Sonia Biondaro, Dimitrios Vlachakis, Anna-Claire Cummins, Antonio Coluccia, Colin Berry, Pieter Leyssen, Johan Neyts, Andrea Brancale. Bioorg Med Chem Lett 2009
34
66

Antibodies as stratagems against cancer.
Louis Papageorgiou, Nguyen Tien Cuong, Dimitrios Vlachakis. Mol Biosyst 2016
6
66

Deciphering the protein interaction in adhesion of Francisella tularensis subsp. holarctica to the endothelial cells.
Elena Bencurova, Andrej Kovac, Lucia Pulzova, Miklós Gyuranecz, Patrik Mlynarcik, Rastislav Mucha, Dimitrios Vlachakis, Sophia Kossida, Zuzana Flachbartova, Mangesh Bhide. Microb Pathog 2015
9
66

Modelling and mutational evidence identify the substrate binding site and functional elements in APC amino acid transporters.
Ioannis Vangelatos, Dimitrios Vlachakis, Vicky Sophianopoulou, George Diallinas. Mol Membr Biol 2009
20
66

A splice variant of the human phosphohistidine phosphatase 1 (PHPT1) is degraded by the proteasome.
Raviteja Inturi, Marcus Wäneskog, Dimitrios Vlachakis, Yeasmeen Ali, Pia Ek, Tanel Punga, Pernilla Bjerling. Int J Biochem Cell Biol 2014
4
66

Automatic single- and multi-label enzymatic function prediction by machine learning.
Shervine Amidi, Afshine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I Zacharaki. PeerJ 2017
14
66


Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces.
Dimitrios Georgios Kontopoulos, Dimitrios Vlachakis, Georgia Tsiliki, Sofia Kossida. BMC Struct Biol 2016
7
66

Space constrained homology modelling: the paradigm of the RNA-dependent RNA polymerase of dengue (type II) virus.
Dimitrios Vlachakis, Dimitrios Georgios Kontopoulos, Sophia Kossida. Comput Math Methods Med 2013
12
66


Towards the elucidation of the regulatory network guiding the insulin producing cells' differentiation.
Maria Kapasa, Dimitrios Vlachakis, Myrto Kostadima, Georgia Sotiropoulou, Sophia Kossida. Genomics 2012
3
66

Erratum to: Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces.
Dimitrios Georgios Kontopoulos, Dimitrios Vlachakis, Georgia Tsiliki, Sofia Kossida. BMC Struct Biol 2016
3
66

Functional characterization of the hGRαT556I causing Chrousos syndrome.
Nicolas C Nicolaides, Eirini Skyrla, Dimitrios Vlachakis, Anna-Maria G Psarra, Paraskevi Moutsatsou, Amalia Sertedaki, Sophia Kossida, Evangelia Charmandari. Eur J Clin Invest 2016
13
66

An integrated in silico approach to design specific inhibitors targeting human poly(a)-specific ribonuclease.
Dimitrios Vlachakis, Athanasia Pavlopoulou, Georgia Tsiliki, Dimitri Komiotis, Constantinos Stathopoulos, Nikolaos A A Balatsos, Sophia Kossida. PLoS One 2012
12
66

A novel mutation of the hGR gene causing Chrousos syndrome.
Nicolas C Nicolaides, Eliza B Geer, Dimitrios Vlachakis, Michael L Roberts, Anna-Maria G Psarra, Paraskevi Moutsatsou, Amalia Sertedaki, Sophia Kossida, Evangelia Charmandari. Eur J Clin Invest 2015
20
66

Current state-of-the-art molecular dynamics methods and applications.
Dimitrios Vlachakis, Elena Bencurova, Nikitas Papangelopoulos, Sophia Kossida. Adv Protein Chem Struct Biol 2014
32
66

Investigating the structural stability of the Tup1-interaction domain of Ssn6: evidence for a conformational change on the complex.
Maria Palaiomylitou, Athanassios Tartas, Dimitrios Vlachakis, Dimitris Tzamarias, Metaxia Vlassi. Proteins 2008
12
66

Kinetic and in silico analysis of the slow-binding inhibition of human poly(A)-specific ribonuclease (PARN) by novel nucleoside analogues.
Nikolaos Balatsos, Dimitrios Vlachakis, Vassiliki Chatzigeorgiou, Stella Manta, Dimitri Komiotis, Metaxia Vlassi, Constantinos Stathopoulos. Biochimie 2012
13
66

Structural models for the design of novel antiviral agents against Greek Goat Encephalitis.
Louis Papageorgiou, Styliani Loukatou, Vassiliki Lila Koumandou, Wojciech Makałowski, Vasileios Megalooikonomou, Dimitrios Vlachakis, Sophia Kossida. PeerJ 2014
11
66

Design, synthesis and application of benzyl-sulfonate biomimetic affinity adsorbents for monoclonal antibody purification from transgenic corn.
Anastasios Maltezos, Dimitris Platis, Dimitrios Vlachakis, Sophia Kossida, Marigianna Marinou, Nikolaos E Labrou. J Mol Recognit 2014
10
66

State-of-the-art technology in modern computer-aided drug design.
Georgios A Dalkas, Dimitrios Vlachakis, Dimosthenis Tsagkrasoulis, Anastasia Kastania, Sophia Kossida. Brief Bioinform 2013
22
66

Protein signatures using electrostatic molecular surfaces in harmonic space.
C Sofia Carvalho, Dimitrios Vlachakis, Georgia Tsiliki, Vasileios Megalooikonomou, Sophia Kossida. PeerJ 2013
7
66

Tyrosinase-like activity in normal human substantia nigra.
M Miranda, D Botti, A Bonfigli, T Ventura, A Arcadi. Gen Pharmacol 1984
31
33

Clinical progression in Parkinson disease and the neurobiology of axons.
Hsiao-Chun Cheng, Christina M Ulane, Robert E Burke. Ann Neurol 2010
428
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.