A citation-based method for searching scientific literature

Chun Kit Kwok, Giovanni Marsico, Shankar Balasubramanian. Cold Spring Harb Perspect Biol 2018
Times Cited: 52







List of co-cited articles
715 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Chun Kit Kwok, Giovanni Marsico, Aleksandr B Sahakyan, Vicki S Chambers, Shankar Balasubramanian. Nat Methods 2016
192
71

RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.
Marta M Fay, Shawn M Lyons, Pavel Ivanov. J Mol Biol 2017
192
57


Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
358
40

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
588
38

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
522
36

G-Quadruplexes: Prediction, Characterization, and Biological Application.
Chun Kit Kwok, Catherine J Merrick. Trends Biotechnol 2017
167
34

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells.
Sunny Y Yang, Pauline Lejault, Sandy Chevrier, Romain Boidot, A Gordon Robertson, Judy M Y Wong, David Monchaud. Nat Commun 2018
99
34

Tracking the Dynamic Folding and Unfolding of RNA G-Quadruplexes in Live Cells.
Xiu-Cai Chen, Shuo-Bin Chen, Jing Dai, Jia-Hao Yuan, Tian-Miao Ou, Zhi-Shu Huang, Jia-Heng Tan. Angew Chem Int Ed Engl 2018
67
32

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
32

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
30

RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer.
Andrew L Wolfe, Kamini Singh, Yi Zhong, Philipp Drewe, Vinagolu K Rajasekhar, Viraj R Sanghvi, Konstantinos J Mavrakis, Man Jiang, Justine E Roderick, Joni Van der Meulen,[...]. Nature 2014
354
30

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
749
30

Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNA.
Chun Kit Kwok, Aleksandr B Sahakyan, Shankar Balasubramanian. Angew Chem Int Ed Engl 2016
59
26

Motif independent identification of potential RNA G-quadruplexes by G4RNA screener.
Jean-Michel Garant, Jean-Pierre Perreault, Michelle S Scott. Bioinformatics 2017
46
28

Visualization of NRAS RNA G-Quadruplex Structures in Cells with an Engineered Fluorogenic Hybridization Probe.
Shuo-Bin Chen, Ming-Hao Hu, Guo-Cai Liu, Jin Wang, Tian-Miao Ou, Lian-Quan Gu, Zhi-Shu Huang, Jia-Heng Tan. J Am Chem Soc 2016
67
25

G-quadruplex RNA structure as a signal for neurite mRNA targeting.
Murugan Subramanian, Florence Rage, Ricardos Tabet, Eric Flatter, Jean-Louis Mandel, Hervé Moine. EMBO Rep 2011
158
25

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
390
25

A potassium ion-dependent RNA structural switch regulates human pre-miRNA 92b maturation.
Gayan Mirihana Arachchilage, Arosha C Dassanayake, Soumitra Basu. Chem Biol 2015
75
23

G-quadruplexes in RNA biology.
Stefania Millevoi, Hervé Moine, Stéphan Vagner. Wiley Interdiscip Rev RNA 2012
190
23

G-Quadruplexes influence pri-microRNA processing.
Samuel G Rouleau, Jean-Michel Garant, François Bolduc, Martin Bisaillon, Jean-Pierre Perreault. RNA Biol 2018
38
31

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
411
23

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
23

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Oleg Kikin, Lawrence D'Antonio, Paramjeet S Bagga. Nucleic Acids Res 2006
502
23

Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts.
Barbara Herdy, Clemens Mayer, Dhaval Varshney, Giovanni Marsico, Pierre Murat, Chris Taylor, Clive D'Santos, David Tannahill, Shankar Balasubramanian. Nucleic Acids Res 2018
64
23

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
288
23

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
407
21

RNA G-quadruplex secondary structure promotes alternative splicing via the RNA-binding protein hnRNPF.
Huilin Huang, Jing Zhang, Samuel E Harvey, Xiaohui Hu, Chonghui Cheng. Genes Dev 2017
82
21

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36.
Michael C Chen, Ramreddy Tippana, Natalia A Demeshkina, Pierre Murat, Shankar Balasubramanian, Sua Myong, Adrian R Ferré-D'Amaré. Nature 2018
120
21

Visualization of RNA-Quadruplexes in Live Cells.
Aurélien Laguerre, Kyle Hukezalie, Pascale Winckler, Fares Katranji, Gaëtan Chanteloup, Marc Pirrotta, Jean-Marie Perrier-Cornet, Judy M Y Wong, David Monchaud. J Am Chem Soc 2015
130
21


Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
21

The RNA Stem-Loop to G-Quadruplex Equilibrium Controls Mature MicroRNA Production inside the Cell.
Satyaprakash Pandey, Prachi Agarwala, Gopal G Jayaraj, Raimundo Gargallo, Souvik Maiti. Biochemistry 2015
53
21


Metal Cations in G-Quadruplex Folding and Stability.
Debmalya Bhattacharyya, Gayan Mirihana Arachchilage, Soumitra Basu. Front Chem 2016
235
19

The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation.
Daniel Benhalevy, Sanjay K Gupta, Charles H Danan, Suman Ghosal, Hong-Wei Sun, Hinke G Kazemier, Katrin Paeschke, Markus Hafner, Stefan A Juranek. Cell Rep 2017
62
19

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
19

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
423
19

G-quadruplexes and helicases.
Oscar Mendoza, Anne Bourdoncle, Jean-Baptiste Boulé, Robert M Brosh, Jean-Louis Mergny. Nucleic Acids Res 2016
234
19

The RNA helicase RHAU (DHX36) unwinds a G4-quadruplex in human telomerase RNA and promotes the formation of the P1 helix template boundary.
E P Booy, M Meier, N Okun, S K Novakowski, S Xiong, J Stetefeld, S A McKenna. Nucleic Acids Res 2012
92
19

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.
Pierre Murat, Giovanni Marsico, Barbara Herdy, Avazeh T Ghanbarian, Guillem Portella, Shankar Balasubramanian. Genome Biol 2018
61
19

Bulges in G-quadruplexes: broadening the definition of G-quadruplex-forming sequences.
Vineeth Thachappilly Mukundan, Anh Tuân Phan. J Am Chem Soc 2013
179
19

Structural analysis reveals the formation and role of RNA G-quadruplex structures in human mature microRNAs.
Ka Lung Chan, Boya Peng, Mubarak I Umar, Chun-Yin Chan, Aleksandr B Sahakyan, Minh T N Le, Chun Kit Kwok. Chem Commun (Camb) 2018
29
34

Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs.
Shawn M Lyons, Dorota Gudanis, Steven M Coyne, Zofia Gdaniec, Pavel Ivanov. Nat Commun 2017
91
19

The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration.
K Matsumura, Y Kawasaki, M Miyamoto, Y Kamoshida, J Nakamura, L Negishi, S Suda, T Akiyama. Oncogene 2017
57
17

RNA G-quadruplexes: emerging mechanisms in disease.
Anne Cammas, Stefania Millevoi. Nucleic Acids Res 2017
114
17

The DEAH-box RNA helicase RHAU binds an intramolecular RNA G-quadruplex in TERC and associates with telomerase holoenzyme.
Simon Lattmann, Michael B Stadler, James P Vaughn, Steven A Akman, Yoshikuni Nagamine. Nucleic Acids Res 2011
78
17

3' UTR G-quadruplexes regulate miRNA binding.
Samuel Rouleau, Jean-Pierre Sehi Glouzon, Andrea Brumwell, Martin Bisaillon, Jean-Pierre Perreault. RNA 2017
57
17

G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
146
17

Genome-wide mapping of endogenous G-quadruplex DNA structures by chromatin immunoprecipitation and high-throughput sequencing.
Robert Hänsel-Hertsch, Jochen Spiegel, Giovanni Marsico, David Tannahill, Shankar Balasubramanian. Nat Protoc 2018
96
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.