A citation-based method for searching scientific literature

Yasar Arfat T Kasu, Samrawit Alemu, Angela Lamari, Nicole Loew, Christopher S Brower. Mol Cell Biol 2018
Times Cited: 11







List of co-cited articles
227 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Manuela Neumann, Deepak M Sampathu, Linda K Kwong, Adam C Truax, Matthew C Micsenyi, Thomas T Chou, Jennifer Bruce, Theresa Schuck, Murray Grossman, Christopher M Clark,[...]. Science 2006
63

Neurodegeneration-associated protein fragments as short-lived substrates of the N-end rule pathway.
Christopher S Brower, Konstantin I Piatkov, Alexander Varshavsky. Mol Cell 2013
79
63

Patient-derived frontotemporal lobar degeneration brain extracts induce formation and spreading of TDP-43 pathology in vivo.
Sílvia Porta, Yan Xu, Clark R Restrepo, Linda K Kwong, Bin Zhang, Hannah J Brown, Edward B Lee, John Q Trojanowski, Virginia M-Y Lee. Nat Commun 2018
106
45

Aberrant cleavage of TDP-43 enhances aggregation and cellular toxicity.
Yong-Jie Zhang, Ya-Fei Xu, Casey Cook, Tania F Gendron, Paul Roettges, Christopher D Link, Wen-Lang Lin, Jimei Tong, Monica Castanedes-Casey, Peter Ash,[...]. Proc Natl Acad Sci U S A 2009
434
45

The N-end rule pathway and regulation by proteolysis.
Alexander Varshavsky. Protein Sci 2011
456
45

An acetylation switch controls TDP-43 function and aggregation propensity.
Todd J Cohen, Andrew W Hwang, Clark R Restrepo, Chao-Xing Yuan, John Q Trojanowski, Virginia M Y Lee. Nat Commun 2015
150
36

TDP-43 extracted from frontotemporal lobar degeneration subject brains displays distinct aggregate assemblies and neurotoxic effects reflecting disease progression rates.
Florent Laferrière, Zuzanna Maniecka, Manuela Pérez-Berlanga, Marian Hruska-Plochan, Larissa Gilhespy, Eva-Maria Hock, Ulrich Wagner, Tariq Afroz, Paul J Boersema, Gery Barmettler,[...]. Nat Neurosci 2019
83
36

Disturbance of nuclear and cytoplasmic TAR DNA-binding protein (TDP-43) induces disease-like redistribution, sequestration, and aggregate formation.
Matthew J Winton, Lionel M Igaz, Margaret M Wong, Linda K Kwong, John Q Trojanowski, Virginia M-Y Lee. J Biol Chem 2008
418
36

TDP-43 is a component of ubiquitin-positive tau-negative inclusions in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Tetsuaki Arai, Masato Hasegawa, Haruhiko Akiyama, Kenji Ikeda, Takashi Nonaka, Hiroshi Mori, David Mann, Kuniaki Tsuchiya, Mari Yoshida, Yoshio Hashizume,[...]. Biochem Biophys Res Commun 2006
36

Templated Aggregation of TAR DNA-binding Protein of 43 kDa (TDP-43) by Seeding with TDP-43 Peptide Fibrils.
Shotaro Shimonaka, Takashi Nonaka, Genjiro Suzuki, Shin-Ichi Hisanaga, Masato Hasegawa. J Biol Chem 2016
64
36

Truncation and pathogenic mutations facilitate the formation of intracellular aggregates of TDP-43.
Takashi Nonaka, Fuyuki Kametani, Tetsuaki Arai, Haruhiko Akiyama, Masato Hasegawa. Hum Mol Genet 2009
223
36

An insoluble frontotemporal lobar degeneration-associated TDP-43 C-terminal fragment causes neurodegeneration and hippocampus pathology in transgenic mice.
Adam K Walker, Kalyan Tripathy, Clark R Restrepo, Guanghui Ge, Yan Xu, Linda K Kwong, John Q Trojanowski, Virginia M-Y Lee. Hum Mol Genet 2015
32
36

Dysregulation of the ALS-associated gene TDP-43 leads to neuronal death and degeneration in mice.
Lionel M Igaz, Linda K Kwong, Edward B Lee, Alice Chen-Plotkin, Eric Swanson, Travis Unger, Joe Malunda, Yan Xu, Matthew J Winton, John Q Trojanowski,[...]. J Clin Invest 2011
277
36

Expression of TDP-43 C-terminal Fragments in Vitro Recapitulates Pathological Features of TDP-43 Proteinopathies.
Lionel M Igaz, Linda K Kwong, Alice Chen-Plotkin, Matthew J Winton, Travis L Unger, Yan Xu, Manuela Neumann, John Q Trojanowski, Virginia M-Y Lee. J Biol Chem 2009
277
36

Prion-like properties of pathological TDP-43 aggregates from diseased brains.
Takashi Nonaka, Masami Masuda-Suzukake, Tetsuaki Arai, Yoko Hasegawa, Hiroyasu Akatsu, Tomokazu Obi, Mari Yoshida, Shigeo Murayama, David M A Mann, Haruhiko Akiyama,[...]. Cell Rep 2013
314
36

An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymes.
Shun-Jia Chen, Xia Wu, Brandon Wadas, Jang-Hyun Oh, Alexander Varshavsky. Science 2017
114
36

N-terminal acetylation of cellular proteins creates specific degradation signals.
Cheol-Sang Hwang, Anna Shemorry, Alexander Varshavsky. Science 2010
445
36

The N-end rule pathway.
Takafumi Tasaki, Shashikanth M Sriram, Kyong Soo Park, Yong Tae Kwon. Annu Rev Biochem 2012
254
36

The Pathobiology of TDP-43 C-Terminal Fragments in ALS and FTLD.
Britt A Berning, Adam K Walker. Front Neurosci 2019
75
36

N-degron and C-degron pathways of protein degradation.
Alexander Varshavsky. Proc Natl Acad Sci U S A 2019
222
36

Differential roles of the ubiquitin proteasome system and autophagy in the clearance of soluble and aggregated TDP-43 species.
Emma L Scotter, Caroline Vance, Agnes L Nishimura, Youn-Bok Lee, Han-Jou Chen, Hazel Urwin, Valentina Sardone, Jacqueline C Mitchell, Boris Rogelj, David C Rubinsztein,[...]. J Cell Sci 2014
172
27

Phosphorylated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis.
Masato Hasegawa, Tetsuaki Arai, Takashi Nonaka, Fuyuki Kametani, Mari Yoshida, Yoshio Hashizume, Thomas G Beach, Emanuele Buratti, Francisco Baralle, Mitsuya Morita,[...]. Ann Neurol 2008
496
27

Molecular analysis and biochemical classification of TDP-43 proteinopathy.
Hiroshi Tsuji, Tetsuaki Arai, Fuyuki Kametani, Takashi Nonaka, Makiko Yamashita, Masami Suzukake, Masato Hosokawa, Mari Yoshida, Hiroyuki Hatsuta, Masaki Takao,[...]. Brain 2012
75
27

TIA1 Mutations in Amyotrophic Lateral Sclerosis and Frontotemporal Dementia Promote Phase Separation and Alter Stress Granule Dynamics.
Ian R Mackenzie, Alexandra M Nicholson, Mohona Sarkar, James Messing, Maria D Purice, Cyril Pottier, Kavya Annu, Matt Baker, Ralph B Perkerson, Aishe Kurti,[...]. Neuron 2017
346
27

Progranulin mediates caspase-dependent cleavage of TAR DNA binding protein-43.
Yong-Jie Zhang, Ya-fei Xu, Chad A Dickey, Emanuele Buratti, Francisco Baralle, Rachel Bailey, Stuart Pickering-Brown, Dennis Dickson, Leonard Petrucelli. J Neurosci 2007
307
27

A single N-terminal phosphomimic disrupts TDP-43 polymerization, phase separation, and RNA splicing.
Ailin Wang, Alexander E Conicella, Hermann Broder Schmidt, Erik W Martin, Shannon N Rhoads, Ashley N Reeb, Amanda Nourse, Daniel Ramirez Montero, Veronica H Ryan, Rajat Rohatgi,[...]. EMBO J 2018
184
27

Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis.
D R Rosen, T Siddique, D Patterson, D A Figlewicz, P Sapp, A Hentati, D Donaldson, J Goto, J P O'Regan, H X Deng. Nature 1993
27

Converging mechanisms in ALS and FTD: disrupted RNA and protein homeostasis.
Shuo-Chien Ling, Magdalini Polymenidou, Don W Cleveland. Neuron 2013
27

Active nuclear import and passive nuclear export are the primary determinants of TDP-43 localization.
Emile S Pinarbasi, Tolga Cağatay, Ho Yee Joyce Fung, Ying C Li, Yuh Min Chook, Philip J Thomas. Sci Rep 2018
63
27

Pathological TDP-43 distinguishes sporadic amyotrophic lateral sclerosis from amyotrophic lateral sclerosis with SOD1 mutations.
Ian R A Mackenzie, Eileen H Bigio, Paul G Ince, Felix Geser, Manuela Neumann, Nigel J Cairns, Linda K Kwong, Mark S Forman, John Ravits, Heather Stewart,[...]. Ann Neurol 2007
684
27

A role for calpain-dependent cleavage of TDP-43 in amyotrophic lateral sclerosis pathology.
Takenari Yamashita, Takuto Hideyama, Kosuke Hachiga, Sayaka Teramoto, Jiro Takano, Nobuhisa Iwata, Takaomi C Saido, Shin Kwak. Nat Commun 2012
117
27

Functional recovery in new mouse models of ALS/FTLD after clearance of pathological cytoplasmic TDP-43.
Adam K Walker, Krista J Spiller, Guanghui Ge, Allen Zheng, Yan Xu, Melissa Zhou, Kalyan Tripathy, Linda K Kwong, John Q Trojanowski, Virginia M-Y Lee. Acta Neuropathol 2015
132
27

Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene.
Pablo Arrisi Mercado, Youhna M Ayala, Maurizio Romano, Emanuele Buratti, Francisco E Baralle. Nucleic Acids Res 2005
187
27

Hyperphosphorylation as a defense mechanism to reduce TDP-43 aggregation.
Huei-Ying Li, Po-An Yeh, Hsiu-Chiang Chiu, Chiou-Yang Tang, Benjamin Pang-hsien Tu. PLoS One 2011
72
27

Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.
Amandine Molliex, Jamshid Temirov, Jihun Lee, Maura Coughlin, Anderson P Kanagaraj, Hong Joo Kim, Tanja Mittag, J Paul Taylor. Cell 2015
27

Co-morbidity of TDP-43 proteinopathy in Lewy body related diseases.
Hanae Nakashima-Yasuda, Kunihiro Uryu, John Robinson, Sharon X Xie, Howard Hurtig, John E Duda, Steven E Arnold, Andrew Siderowf, Murray Grossman, James B Leverenz,[...]. Acta Neuropathol 2007
321
27

A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD.
Alan E Renton, Elisa Majounie, Adrian Waite, Javier Simón-Sánchez, Sara Rollinson, J Raphael Gibbs, Jennifer C Schymick, Hannu Laaksovirta, John C van Swieten, Liisa Myllykangas,[...]. Neuron 2011
27

In vitro prion-like behaviour of TDP-43 in ALS.
Phillip Smethurst, Jia Newcombe, Claire Troakes, Roberto Simone, Yun-Ru Chen, Rickie Patani, Katie Sidle. Neurobiol Dis 2016
74
27

Wild-type human TDP-43 expression causes TDP-43 phosphorylation, mitochondrial aggregation, motor deficits, and early mortality in transgenic mice.
Ya-Fei Xu, Tania F Gendron, Yong-Jie Zhang, Wen-Lang Lin, Simon D'Alton, Hong Sheng, Monica Castanedes Casey, Jimei Tong, Joshua Knight, Xin Yu,[...]. J Neurosci 2010
364
27

Structural determinants of the cellular localization and shuttling of TDP-43.
Youhna M Ayala, Paola Zago, Andrea D'Ambrogio, Ya-Fei Xu, Leonard Petrucelli, Emanuele Buratti, Francisco E Baralle. J Cell Sci 2008
383
27

Colocalization of transactivation-responsive DNA-binding protein 43 and huntingtin in inclusions of Huntington disease.
Claudia Schwab, Tetsuaki Arai, Masato Hasegawa, Sheng Yu, Patrick L McGeer. J Neuropathol Exp Neurol 2008
173
27

Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43.
Magdalini Polymenidou, Clotilde Lagier-Tourenne, Kasey R Hutt, Stephanie C Huelga, Jacqueline Moran, Tiffany Y Liang, Shuo-Chien Ling, Eveline Sun, Edward Wancewicz, Curt Mazur,[...]. Nat Neurosci 2011
811
27

Requirements for stress granule recruitment of fused in sarcoma (FUS) and TAR DNA-binding protein of 43 kDa (TDP-43).
Eva Bentmann, Manuela Neumann, Sabina Tahirovic, Ramona Rodde, Dorothee Dormann, Christian Haass. J Biol Chem 2012
193
27

TAR DNA-binding protein 43 (TDP-43) liquid-liquid phase separation is mediated by just a few aromatic residues.
Hao-Ru Li, Wan-Chin Chiang, Po-Chun Chou, Won-Jing Wang, Jie-Rong Huang. J Biol Chem 2018
112
27

TDP-43 post-translational modifications in health and disease.
Emanuele Buratti. Expert Opin Ther Targets 2018
72
27

The cleavage pattern of TDP-43 determines its rate of clearance and cytotoxicity.
Quan Li, Moe Yokoshi, Hitomi Okada, Yukio Kawahara. Nat Commun 2015
65
27



Gains or losses: molecular mechanisms of TDP43-mediated neurodegeneration.
Edward B Lee, Virginia M-Y Lee, John Q Trojanowski. Nat Rev Neurosci 2011
449
27

ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.
Alexander E Conicella, Gül H Zerze, Jeetain Mittal, Nicolas L Fawzi. Structure 2016
412
27


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.