A citation-based method for searching scientific literature

Anthony Tubbs, Sriram Sridharan, Niek van Wietmarschen, Yaakov Maman, Elsa Callen, Andre Stanlie, Wei Wu, Xia Wu, Amanda Day, Nancy Wong, Mianmian Yin, Andres Canela, Haiqing Fu, Christophe Redon, Steven C Pruitt, Yan Jaszczyszyn, Mirit I Aladjem, Peter D Aplan, Olivier Hyrien, André Nussenzweig. Cell 2018
Times Cited: 89







List of co-cited articles
1290 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Identification of early replicating fragile sites that contribute to genome instability.
Jacqueline H Barlow, Robert B Faryabi, Elsa Callén, Nancy Wong, Amy Malhowski, Hua Tang Chen, Gustavo Gutierrez-Cruz, Hong-Wei Sun, Peter McKinnon, George Wright,[...]. Cell 2013
263
24

Replication landscape of the human genome.
Nataliya Petryk, Malik Kahli, Yves d'Aubenton-Carafa, Yan Jaszczyszyn, Yimin Shen, Maud Silvain, Claude Thermes, Chun-Long Chen, Olivier Hyrien. Nat Commun 2016
145
24



Fragile sites in cancer: more than meets the eye.
Thomas W Glover, Thomas E Wilson, Martin F Arlt. Nat Rev Cancer 2017
124
17

DNA Breaks and End Resection Measured Genome-wide by End Sequencing.
Andres Canela, Sriram Sridharan, Nicholas Sciascia, Anthony Tubbs, Paul Meltzer, Barry P Sleckman, André Nussenzweig. Mol Cell 2016
124
17

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site.
Anne Letessier, Gaël A Millot, Stéphane Koundrioukoff, Anne-Marie Lachagès, Nicolas Vogt, R Scott Hansen, Bernard Malfoy, Olivier Brison, Michelle Debatisse. Nature 2011
296
17

DNA replication origin activation in space and time.
Michalis Fragkos, Olivier Ganier, Philippe Coulombe, Marcel Méchali. Nat Rev Mol Cell Biol 2015
254
16

Nucleotide deficiency promotes genomic instability in early stages of cancer development.
Assaf C Bester, Maayan Roniger, Yifat S Oren, Michael M Im, Dan Sarni, Malka Chaoat, Aaron Bensimon, Gideon Zamir, Donna S Shewach, Batsheva Kerem. Cell 2011
549
16

Chromosome fragile sites.
Sandra G Durkin, Thomas W Glover. Annu Rev Genet 2007
509
16

Replication stress activates DNA repair synthesis in mitosis.
Sheroy Minocherhomji, Songmin Ying, Victoria A Bjerregaard, Sara Bursomanno, Aiste Aleliunaite, Wei Wu, Hocine W Mankouri, Huahao Shen, Ying Liu, Ian D Hickson. Nature 2015
306
16

Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes.
Benoît Le Tallec, Gaël Armel Millot, Marion Esther Blin, Olivier Brison, Bernard Dutrillaux, Michelle Debatisse. Cell Rep 2013
127
16

Transcription shapes DNA replication initiation and termination in human cells.
Yu-Hung Chen, Sarah Keegan, Malik Kahli, Peter Tonzi, David Fenyö, Tony T Huang, Duncan J Smith. Nat Struct Mol Biol 2019
55
27

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
15

RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
196
15

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
15

Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition.
Nishita Shastri, Yu-Chen Tsai, Suzanne Hile, Deondre Jordan, Barrett Powell, Jessica Chen, Dillon Maloney, Marei Dose, Yancy Lo, Theonie Anastassiadis,[...]. Mol Cell 2018
33
39

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
243
14

Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq).
Alexander R Langley, Stefan Gräf, James C Smith, Torsten Krude. Nucleic Acids Res 2016
44
29

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
14

The impact of replication stress on replication dynamics and DNA damage in vertebrate cells.
Hervé Técher, Stéphane Koundrioukoff, Alain Nicolas, Michelle Debatisse. Nat Rev Genet 2017
135
13

Failure of origin activation in response to fork stalling leads to chromosomal instability at fragile sites.
Efrat Ozeri-Galai, Ronald Lebofsky, Ayelet Rahat, Assaf C Bester, Aaron Bensimon, Batsheva Kerem. Mol Cell 2011
128
13


Molecular basis for expression of common and rare fragile sites.
Eitan Zlotorynski, Ayelet Rahat, Jennifer Skaug, Neta Ben-Porat, Efrat Ozeri, Ruth Hershberg, Ayala Levi, Stephen W Scherer, Hanah Margalit, Batsheva Kerem. Mol Cell Biol 2003
178
13

DNA replication stress as a hallmark of cancer.
Morgane Macheret, Thanos D Halazonetis. Annu Rev Pathol 2015
380
13

DNA synthesis by Pol η promotes fragile site stability by preventing under-replicated DNA in mitosis.
Valérie Bergoglio, Anne-Sophie Boyer, Erin Walsh, Valeria Naim, Gaëlle Legube, Marietta Y W T Lee, Laurie Rey, Filippo Rosselli, Christophe Cazaux, Kristin A Eckert,[...]. J Cell Biol 2013
129
13

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.
R Scott Hansen, Sean Thomas, Richard Sandstrom, Theresa K Canfield, Robert E Thurman, Molly Weaver, Michael O Dorschner, Stanley M Gartler, John A Stamatoyannopoulos. Proc Natl Acad Sci U S A 2010
346
13

Genome-wide analysis of the spatiotemporal regulation of firing and dormant replication origins in human cells.
Nozomi Sugimoto, Kazumitsu Maehara, Kazumasa Yoshida, Yasuyuki Ohkawa, Masatoshi Fujita. Nucleic Acids Res 2018
35
34

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Emilie Besnard, Amélie Babled, Laure Lapasset, Ollivier Milhavet, Hugues Parrinello, Christelle Dantec, Jean-Michel Marin, Jean-Marc Lemaitre. Nat Struct Mol Biol 2012
252
13

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.
Christelle Cayrou, Philippe Coulombe, Alice Vigneron, Slavica Stanojcic, Olivier Ganier, Isabelle Peiffer, Eric Rivals, Aurore Puy, Sabine Laurent-Chabalier, Romain Desprat,[...]. Genome Res 2011
218
13

The chromatin environment shapes DNA replication origin organization and defines origin classes.
Christelle Cayrou, Benoit Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, Jean-Christophe Andrau, Jacques van Helden, Marcel Méchali. Genome Res 2015
91
13

FANCD2 Facilitates Replication through Common Fragile Sites.
Advaitha Madireddy, Settapong T Kosiyatrakul, Rebecca A Boisvert, Emilia Herrera-Moyano, María L García-Rubio, Jeannine Gerhardt, Elizabeth A Vuono, Nichole Owen, Zi Yan, Susan Olson,[...]. Mol Cell 2016
107
12

Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions.
Vassilis G Gorgoulis, Leandros-Vassilios F Vassiliou, Panagiotis Karakaidos, Panayotis Zacharatos, Athanassios Kotsinas, Triantafillos Liloglou, Monica Venere, Richard A Ditullio, Nikolaos G Kastrinakis, Brynn Levy,[...]. Nature 2005
12

Large transcription units unify copy number variants and common fragile sites arising under replication stress.
Thomas E Wilson, Martin F Arlt, So Hae Park, Sountharia Rajendran, Michelle Paulsen, Mats Ljungman, Thomas W Glover. Genome Res 2015
104
12

DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis.
Jirina Bartkova, Zuzana Horejsí, Karen Koed, Alwin Krämer, Frederic Tort, Karsten Zieger, Per Guldberg, Maxwell Sehested, Jahn M Nesland, Claudia Lukas,[...]. Nature 2005
12


G4 motifs affect origin positioning and efficiency in two vertebrate replicators.
Anne-Laure Valton, Vahideh Hassan-Zadeh, Ingrid Lema, Nicole Boggetto, Patrizia Alberti, Carole Saintomé, Jean-Francois Riou, Marie-Noëlle Prioleau. EMBO J 2014
117
12

Transcription-dependent regulation of replication dynamics modulates genome stability.
Marion Blin, Benoît Le Tallec, Viola Nähse, Mélanie Schmidt, Caroline Brossas, Gael A Millot, Marie-Noëlle Prioleau, Michelle Debatisse. Nat Struct Mol Biol 2019
37
29



DNA replication origins-where do we begin?
Marie-Noëlle Prioleau, David M MacAlpine. Genes Dev 2016
91
11

Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks.
Sotirios K Sotiriou, Irene Kamileri, Natalia Lugli, Konstantinos Evangelou, Caterina Da-Ré, Florian Huber, Laura Padayachy, Sebastien Tardy, Noemie L Nicati, Samia Barriot,[...]. Mol Cell 2016
165
11

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
260
11

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.
Franck Picard, Jean-Charles Cadoret, Benjamin Audit, Alain Arneodo, Adriana Alberti, Christophe Battail, Laurent Duret, Marie-Noelle Prioleau. PLoS Genet 2014
85
11

Genome-wide studies highlight indirect links between human replication origins and gene regulation.
Jean-Charles Cadoret, Françoise Meisch, Vahideh Hassan-Zadeh, Isabelle Luyten, Claire Guillet, Laurent Duret, Hadi Quesneville, Marie-Noëlle Prioleau. Proc Natl Acad Sci U S A 2008
206
11

DNA polymerases eta and kappa exchange with the polymerase delta holoenzyme to complete common fragile site synthesis.
Ryan P Barnes, Suzanne E Hile, Marietta Y Lee, Kristin A Eckert. DNA Repair (Amst) 2017
28
32

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
668
10

Replication fork stalling at natural impediments.
Ekaterina V Mirkin, Sergei M Mirkin. Microbiol Mol Biol Rev 2007
361
10

Molecular profiling of common fragile sites in human fibroblasts.
Benoî Le Tallec, Bernard Dutrillaux, Anne-Marie Lachages, Gael Armel Millot, Olivier Brison, Michelle Debatisse. Nat Struct Mol Biol 2011
92
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.