A citation-based method for searching scientific literature

Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
Times Cited: 39







List of co-cited articles
285 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
82

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
77
46

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
89
46

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
306
41

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
203
41

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
66
38

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick Mineault, Peter Rupprecht,[...]. PLoS Comput Biol 2018
36
36

Spike inference from calcium imaging using sequential Monte Carlo methods.
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
108
30

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
220
30


High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision.
Benjamin F Grewe, Dominik Langer, Hansjörg Kasper, Björn M Kampa, Fritjof Helmchen. Nat Methods 2010
268
23

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
467
23

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
701
20

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
359
20

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
101
20

A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.
Simon P Peron, Jeremy Freeman, Vijay Iyer, Caiying Guo, Karel Svoboda. Neuron 2015
143
17

Fast and accurate detection of action potentials from somatic calcium fluctuations.
Takuya Sasaki, Naoya Takahashi, Norio Matsuki, Yuji Ikegaya. J Neurophysiol 2008
85
17

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
146
17

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
167
17

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
565
15

EXACT SPIKE TRAIN INFERENCE VIA ℓ0 OPTIMIZATION.
Sean Jewell, Daniela Witten. Ann Appl Stat 2018
13
46

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines.
Nicholas A Steinmetz, Christina Buetfering, Jerome Lecoq, Christian R Lee, Andrew J Peters, Elina A K Jacobs, Philip Coen, Douglas R Ollerenshaw, Matthew T Valley, Saskia E J de Vries,[...]. eNeuro 2017
89
15

Inference of neuronal network spike dynamics and topology from calcium imaging data.
Henry Lütcke, Felipe Gerhard, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. Front Neural Circuits 2013
44
15

Population imaging of ongoing neuronal activity in the visual cortex of awake rats.
David S Greenberg, Arthur R Houweling, Jason N D Kerr. Nat Neurosci 2008
270
15

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
208
15

Large-scale imaging of cortical dynamics during sensory perception and behavior.
Joseph B Wekselblatt, Erik D Flister, Denise M Piscopo, Cristopher M Niell. J Neurophysiol 2016
98
15

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
466
15

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
208
15

Improving data quality in neuronal population recordings.
Kenneth D Harris, Rodrigo Quian Quiroga, Jeremy Freeman, Spencer L Smith. Nat Neurosci 2016
87
15

In vivo two-photon calcium imaging of neuronal networks.
Christoph Stosiek, Olga Garaschuk, Knut Holthoff, Arthur Konnerth. Proc Natl Acad Sci U S A 2003
806
15

A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
315
12

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data.
Pengcheng Zhou, Shanna L Resendez, Jose Rodriguez-Romaguera, Jessica C Jimenez, Shay Q Neufeld, Andrea Giovannucci, Johannes Friedrich, Eftychios A Pnevmatikakis, Garret D Stuber, Rene Hen,[...]. Elife 2018
134
12

A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex.
Saskia E J de Vries, Jerome A Lecoq, Michael A Buice, Peter A Groblewski, Gabriel K Ocker, Michael Oliver, David Feng, Nicholas Cain, Peter Ledochowitsch, Daniel Millman,[...]. Nat Neurosci 2020
51
12

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
607
12

Measuring and interpreting neuronal correlations.
Marlene R Cohen, Adam Kohn. Nat Neurosci 2011
513
12

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
12

Photon shot noise limits on optical detection of neuronal spikes and estimation of spike timing.
Brian A Wilt, James E Fitzgerald, Mark J Schnitzer. Biophys J 2013
68
12

Large-scale recording of neuronal ensembles.
György Buzsáki. Nat Neurosci 2004
845
12

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice.
Takaki Komiyama, Takashi R Sato, Daniel H O'Connor, Ying-Xin Zhang, Daniel Huber, Bryan M Hooks, Mariano Gabitto, Karel Svoboda. Nature 2010
270
12

Multiple dynamic representations in the motor cortex during sensorimotor learning.
D Huber, D A Gutnisky, S Peron, D H O'Connor, J S Wiegert, L Tian, T G Oertner, L L Looger, K Svoboda. Nature 2012
285
12

Cellular level brain imaging in behaving mammals: an engineering approach.
Elizabeth J O Hamel, Benjamin F Grewe, Jones G Parker, Mark J Schnitzer. Neuron 2015
84
12

Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex.
Aaron M Kerlin, Mark L Andermann, Vladimir K Berezovskii, R Clay Reid. Neuron 2010
345
12

Fast nonconvex deconvolution of calcium imaging data.
Sean W Jewell, Toby Dylan Hocking, Paul Fearnhead, Daniela M Witten. Biostatistics 2020
8
62

Network anatomy and in vivo physiology of visual cortical neurons.
Davi D Bock, Wei-Chung Allen Lee, Aaron M Kerlin, Mark L Andermann, Greg Hood, Arthur W Wetzel, Sergey Yurgenson, Edward R Soucy, Hyon Suk Kim, R Clay Reid. Nature 2011
467
10

Learning Enhances Sensory and Multiple Non-sensory Representations in Primary Visual Cortex.
Jasper Poort, Adil G Khan, Marius Pachitariu, Abdellatif Nemri, Ivana Orsolic, Julija Krupic, Marius Bauza, Maneesh Sahani, Georg B Keller, Thomas D Mrsic-Flogel,[...]. Neuron 2015
151
10

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
591
10

Vision and Locomotion Shape the Interactions between Neuron Types in Mouse Visual Cortex.
Mario Dipoppa, Adam Ranson, Michael Krumin, Marius Pachitariu, Matteo Carandini, Kenneth D Harris. Neuron 2018
89
10

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
10

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat Neurosci 2010
394
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.