A citation-based method for searching scientific literature

Amit Zeisel, Hannah Hochgerner, Peter Lönnerberg, Anna Johnsson, Fatima Memic, Job van der Zwan, Martin Häring, Emelie Braun, Lars E Borm, Gioele La Manno, Simone Codeluppi, Alessandro Furlan, Kawai Lee, Nathan Skene, Kenneth D Harris, Jens Hjerling-Leffler, Ernest Arenas, Patrik Ernfors, Ulrika Marklund, Sten Linnarsson. Cell 2018
Times Cited: 841







List of co-cited articles
648 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
17

A molecular atlas of cell types and zonation in the brain vasculature.
Michael Vanlandewijck, Liqun He, Maarja Andaloussi Mäe, Johanna Andrae, Koji Ando, Francesca Del Gaudio, Khayrun Nahar, Thibaud Lebouvier, Bàrbara Laviña, Leonor Gouveia,[...]. Nature 2018
641
14

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
14

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing.
Dmitry Usoskin, Alessandro Furlan, Saiful Islam, Hind Abdo, Peter Lönnerberg, Daohua Lou, Jens Hjerling-Leffler, Jesper Haeggström, Olga Kharchenko, Peter V Kharchenko,[...]. Nat Neurosci 2015
962
13

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.
Arpiar Saunders, Evan Z Macosko, Alec Wysoker, Melissa Goldman, Fenna M Krienen, Heather de Rivera, Elizabeth Bien, Matthew Baum, Laura Bortolin, Shuyu Wang,[...]. Cell 2018
504
12

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9

The Human and Mouse Enteric Nervous System at Single-Cell Resolution.
Eugene Drokhlyansky, Christopher S Smillie, Nicholas Van Wittenberghe, Maria Ericsson, Gabriel K Griffin, Gokcen Eraslan, Danielle Dionne, Michael S Cuoco, Max N Goder-Reiser, Tatyana Sharova,[...]. Cell 2020
84
10

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
9

Circuit dissection of the role of somatostatin in itch and pain.
Jing Huang, Erika Polgár, Hans Jürgen Solinski, Santosh K Mishra, Pang-Yen Tseng, Noboru Iwagaki, Kieran A Boyle, Allen C Dickie, Mette C Kriegbaum, Hendrik Wildner,[...]. Nat Neurosci 2018
110
7

Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types.
Martin Häring, Amit Zeisel, Hannah Hochgerner, Puneet Rinwa, Jon E T Jakobsson, Peter Lönnerberg, Gioele La Manno, Nilesh Sharma, Lotta Borgius, Ole Kiehn,[...]. Nat Neurosci 2018
175
7

SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
7

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing.
Khomgrit Morarach, Anastassia Mikhailova, Viktoria Knoflach, Fatima Memic, Rakesh Kumar, Wei Li, Patrik Ernfors, Ulrika Marklund. Nat Neurosci 2021
42
16

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
7

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation.
Zizhen Yao, Cindy T J van Velthoven, Thuc Nghi Nguyen, Jeff Goldy, Adriana E Sedeno-Cortes, Fahimeh Baftizadeh, Darren Bertagnolli, Tamara Casper, Megan Chiang, Kirsten Crichton,[...]. Cell 2021
71
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

Nppb Neurons Are Sensors of Mast Cell-Induced Itch.
Hans Jürgen Solinski, Mette C Kriegbaum, Pang-Yen Tseng, Thomas W Earnest, Xinglong Gu, Arnab Barik, Alexander T Chesler, Mark A Hoon. Cell Rep 2019
46
13

Sensory neuron-specific GPCR Mrgprs are itch receptors mediating chloroquine-induced pruritus.
Qin Liu, Zongxiang Tang, Lenka Surdenikova, Seungil Kim, Kush N Patel, Andrew Kim, Fei Ru, Yun Guan, Hao-Jui Weng, Yixun Geng,[...]. Cell 2009
488
6

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
6

The emergence of transcriptional identity in somatosensory neurons.
Nikhil Sharma, Kali Flaherty, Karina Lezgiyeva, Daniel E Wagner, Allon M Klein, David D Ginty. Nature 2020
96
6

Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior.
Anupama Sathyamurthy, Kory R Johnson, Kaya J E Matson, Courtney I Dobrott, Li Li, Anna R Ryba, Tzipporah B Bergman, Michael C Kelly, Matthew W Kelley, Ariel J Levine. Cell Rep 2018
135
6

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.
Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T Gray, Staci A Sorensen, Tim Dolbeare,[...]. Nat Neurosci 2016
781
6

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
860
6

A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.
Hadas Keren-Shaul, Amit Spinrad, Assaf Weiner, Orit Matcovitch-Natan, Raz Dvir-Szternfeld, Tyler K Ulland, Eyal David, Kuti Baruch, David Lara-Astaiso, Beata Toth,[...]. Cell 2017
6

Development and Functional Diversification of Cortical Interneurons.
Lynette Lim, Da Mi, Alfredo Llorca, Oscar Marín. Neuron 2018
207
6

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Patrik L Ståhl, Fredrik Salmén, Sanja Vickovic, Anna Lundmark, José Fernández Navarro, Jens Magnusson, Stefania Giacomello, Michaela Asp, Jakub O Westholm, Mikael Huss,[...]. Science 2016
722
6


Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
506
6

A subpopulation of nociceptors specifically linked to itch.
Liang Han, Chao Ma, Qin Liu, Hao-Jui Weng, Yiyuan Cui, Zongxiang Tang, Yushin Kim, Hong Nie, Lintao Qu, Kush N Patel,[...]. Nat Neurosci 2013
335
5

The cells and circuitry for itch responses in mice.
Santosh K Mishra, Mark A Hoon. Science 2013
291
5


Heterogeneity and phenotypic plasticity of glial cells in the mammalian enteric nervous system.
Werend Boesmans, Reena Lasrado, Pieter Vanden Berghe, Vassilis Pachnis. Glia 2015
116
5


Mechanisms of itch evoked by β-alanine.
Qin Liu, Parul Sikand, Chao Ma, Zongxiang Tang, Liang Han, Zhe Li, Shuohao Sun, Robert H LaMotte, Xinzhong Dong. J Neurosci 2012
177
5

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
5

Pericytes regulate the blood-brain barrier.
Annika Armulik, Guillem Genové, Maarja Mäe, Maya H Nisancioglu, Elisabet Wallgard, Colin Niaudet, Liqun He, Jenny Norlin, Per Lindblom, Karin Strittmatter,[...]. Nature 2010
5

Cells of the human intestinal tract mapped across space and time.
Rasa Elmentaite, Natsuhiko Kumasaka, Kenny Roberts, Aaron Fleming, Emma Dann, Hamish W King, Vitalii Kleshchevnikov, Monika Dabrowska, Sophie Pritchard, Liam Bolt,[...]. Nature 2021
26
19

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors.
Christopher S McGinnis, Lyndsay M Murrow, Zev J Gartner. Cell Syst 2019
300
5

Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map.
Omer Ali Bayraktar, Theresa Bartels, Staffan Holmqvist, Vitalii Kleshchevnikov, Araks Martirosyan, Damon Polioudakis, Lucile Ben Haim, Adam M H Young, Mykhailo Y Batiuk, Kirti Prakash,[...]. Nat Neurosci 2020
120
5

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
5

Full-length RNA-seq from single cells using Smart-seq2.
Simone Picelli, Omid R Faridani, Asa K Björklund, Gösta Winberg, Sven Sagasser, Rickard Sandberg. Nat Protoc 2014
5

Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research.
Pradipta Ray, Andrew Torck, Lilyana Quigley, Andi Wangzhou, Matthew Neiman, Chandranshu Rao, Tiffany Lam, Ji-Young Kim, Tae Hoon Kim, Michael Q Zhang,[...]. Pain 2018
140
4

Astrocyte scar formation aids central nervous system axon regeneration.
Mark A Anderson, Joshua E Burda, Yilong Ren, Yan Ao, Timothy M O'Shea, Riki Kawaguchi, Giovanni Coppola, Baljit S Khakh, Timothy J Deming, Michael V Sofroniew. Nature 2016
870
4

Microglia-organized scar-free spinal cord repair in neonatal mice.
Yi Li, Xuelian He, Riki Kawaguchi, Yu Zhang, Qing Wang, Aboozar Monavarfeshani, Zhiyun Yang, Bo Chen, Zhongju Shi, Huyan Meng,[...]. Nature 2020
53
7

CNS fibroblasts form a fibrotic scar in response to immune cell infiltration.
Cayce E Dorrier, Dvir Aran, Ezekiel A Haenelt, Ryan N Sheehy, Kimberly K Hoi, Lucija Pintarić, Yanan Chen, Carlos O Lizama, Kelly M Cautivo, Geoffrey A Weiner,[...]. Nat Neurosci 2021
28
14

The enteric nervous system and neurogastroenterology.
John B Furness. Nat Rev Gastroenterol Hepatol 2012
697
4

Enteric Glia Modulate Macrophage Phenotype and Visceral Sensitivity following Inflammation.
Vladimir Grubišić, Jonathon L McClain, David E Fried, Iveta Grants, Pradeep Rajasekhar, Eva Csizmadia, Olujimi A Ajijola, Ralph E Watson, Daniel P Poole, Simon C Robson,[...]. Cell Rep 2020
32
12

Enteric glia are multipotent in culture but primarily form glia in the adult rodent gut.
Nancy M Joseph, Shenghui He, Elsa Quintana, Yun-Gi Kim, Gabriel Núñez, Sean J Morrison. J Clin Invest 2011
152
4

The Cellular and Synaptic Architecture of the Mechanosensory Dorsal Horn.
Victoria E Abraira, Emily D Kuehn, Anda M Chirila, Mark W Springel, Alexis A Toliver, Amanda L Zimmerman, Lauren L Orefice, Kieran A Boyle, Ling Bai, Bryan J Song,[...]. Cell 2017
154
4

Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C P Navarro, Declan Clarke, Mengting Gu, Prashant Emani, Yucheng T Yang,[...]. Science 2018
275
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.