A citation-based method for searching scientific literature

Maria Rubtsova, Yulia Naraykina, Daria Vasilkova, Mark Meerson, Maria Zvereva, Vladimir Prassolov, Vasily Lazarev, Valentin Manuvera, Sergey Kovalchuk, Nickolay Anikanov, Ivan Butenko, Olga Pobeguts, Vadim Govorun, Olga Dontsova. Nucleic Acids Res 2018
Times Cited: 10







List of co-cited articles
89 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.
Ariel A Bazzini, Timothy G Johnstone, Romain Christiano, Sebastian D Mackowiak, Benedikt Obermayer, Elizabeth S Fleming, Charles E Vejnar, Miler T Lee, Nikolaus Rajewsky, Tobias C Walther,[...]. EMBO J 2014
342
40

The RNA component of human telomerase.
J Feng, W D Funk, S S Wang, S L Weinrich, A A Avilion, C P Chiu, R R Adams, E Chang, R C Allsopp, J Yu. Science 1995
40


Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq.
Julie L Aspden, Ying Chen Eyre-Walker, Rose J Phillips, Unum Amin, Muhammad Ali S Mumtaz, Michele Brocard, Juan-Pablo Couso. Elife 2014
145
30

mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide.
Akinobu Matsumoto, Alessandra Pasut, Masaki Matsumoto, Riu Yamashita, Jacqueline Fung, Emanuele Monteleone, Alan Saghatelian, Keiichi I Nakayama, John G Clohessy, Pier Paolo Pandolfi. Nature 2017
238
30


Detecting actively translated open reading frames in ribosome profiling data.
Lorenzo Calviello, Neelanjan Mukherjee, Emanuel Wyler, Henrik Zauber, Antje Hirsekorn, Matthias Selbach, Markus Landthaler, Benedikt Obermayer, Uwe Ohler. Nat Methods 2016
170
30

A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle.
Benjamin R Nelson, Catherine A Makarewich, Douglas M Anderson, Benjamin R Winders, Constantine D Troupes, Fenfen Wu, Austin L Reese, John R McAnally, Xiongwen Chen, Ege T Kavalali,[...]. Science 2016
335
30

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
30

A micropeptide encoded by a putative long noncoding RNA regulates muscle performance.
Douglas M Anderson, Kelly M Anderson, Chi-Lun Chang, Catherine A Makarewich, Benjamin R Nelson, John R McAnally, Prasad Kasaragod, John M Shelton, Jen Liou, Rhonda Bassel-Duby,[...]. Cell 2015
540
30

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes.
Sebastiaan van Heesch, Maarten van Iterson, Jetse Jacobi, Sander Boymans, Paul B Essers, Ewart de Bruijn, Wensi Hao, Alyson W MacInnes, Edwin Cuppen, Marieke Simonis. Genome Biol 2014
223
30

Translation of neutrally evolving peptides provides a basis for de novo gene evolution.
Jorge Ruiz-Orera, Pol Verdaguer-Grau, José Luis Villanueva-Cañas, Xavier Messeguer, M Mar Albà. Nat Ecol Evol 2018
40
30

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.
Guo-Liang Chew, Andrea Pauli, John L Rinn, Aviv Regev, Alexander F Schier, Eivind Valen. Development 2013
158
30

Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames.
Emile G Magny, Jose Ignacio Pueyo, Frances M G Pearl, Miguel Angel Cespedes, Jeremy E Niven, Sarah A Bishop, Juan Pablo Couso. Science 2013
177
30

A human microprotein that interacts with the mRNA decapping complex.
Nadia G D'Lima, Jiao Ma, Lauren Winkler, Qian Chu, Ken H Loh, Elizabeth O Corpuz, Bogdan A Budnik, Jens Lykke-Andersen, Alan Saghatelian, Sarah A Slavoff. Nat Chem Biol 2017
92
30

Human Telomerase RNA Processing and Quality Control.
Chi-Kang Tseng, Hui-Fang Wang, Allison M Burns, Morgan R Schroeder, Martina Gaspari, Peter Baumann. Cell Rep 2015
75
30

Mitochondrial Trafficking and Processing of Telomerase RNA TERC.
Ying Cheng, Peipei Liu, Qian Zheng, Ge Gao, Jiapei Yuan, Pengfeng Wang, Jinliang Huang, Leiming Xie, Xinping Lu, Tanjun Tong,[...]. Cell Rep 2018
22
30


Human telomerase RNA accumulation in Cajal bodies facilitates telomerase recruitment to telomeres and telomere elongation.
Gaël Cristofari, Emem Adolf, Patrick Reichenbach, Katarzyna Sikora, Rebecca M Terns, Michael P Terns, Joachim Lingner. Mol Cell 2007
114
30


An Activity Switch in Human Telomerase Based on RNA Conformation and Shaped by TCAB1.
Lu Chen, Caitlin M Roake, Adam Freund, Pedro J Batista, Siqi Tian, Yi A Yin, Chandresh R Gajera, Shengda Lin, Byron Lee, Matthew F Pech,[...]. Cell 2018
21
30

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, N Osato, R Saito, H Suzuki,[...]. Nature 2002
20

Putatively noncoding transcripts show extensive association with ribosomes.
Benjamin A Wilson, Joanna Masel. Genome Biol Evol 2011
73
20

Long non-coding RNAs as a source of new peptides.
Jorge Ruiz-Orera, Xavier Messeguer, Juan Antonio Subirana, M Mar Alba. Elife 2014
243
20

Ribosome profiling reveals a cell-type-specific translational landscape in brain tumors.
Christian Gonzalez, Jennifer S Sims, Nicholas Hornstein, Angeliki Mela, Franklin Garcia, Liang Lei, David A Gass, Benjamin Amendolara, Jeffrey N Bruce, Peter Canoll,[...]. J Neurosci 2014
59
20

Proto-genes and de novo gene birth.
Anne-Ruxandra Carvunis, Thomas Rolland, Ilan Wapinski, Michael A Calderwood, Muhammed A Yildirim, Nicolas Simonis, Benoit Charloteaux, César A Hidalgo, Justin Barbette, Balaji Santhanam,[...]. Nature 2012
281
20


PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.
Michael F Lin, Irwin Jungreis, Manolis Kellis. Bioinformatics 2011
521
20

Upstream ORFs are prevalent translational repressors in vertebrates.
Timothy G Johnstone, Ariel A Bazzini, Antonio J Giraldez. EMBO J 2016
126
20


Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
20

Origins of De Novo Genes in Human and Chimpanzee.
Jorge Ruiz-Orera, Jessica Hernandez-Rodriguez, Cristina Chiva, Eduard Sabidó, Ivanela Kondova, Ronald Bontrop, Tomàs Marqués-Bonet, M Mar Albà. PLoS Genet 2015
49
20

Detection of nonneutral substitution rates on mammalian phylogenies.
Katherine S Pollard, Melissa J Hubisz, Kate R Rosenbloom, Adam Siepel. Genome Res 2010
20

The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation.
Maria Polycarpou-Schwarz, Matthias Groß, Pieter Mestdagh, Johanna Schott, Stefanie E Grund, Catherina Hildenbrand, Joachim Rom, Sebastian Aulmann, Hans-Peter Sinn, Jo Vandesompele,[...]. Oncogene 2018
39
20

Mitoregulin: A lncRNA-Encoded Microprotein that Supports Mitochondrial Supercomplexes and Respiratory Efficiency.
Colleen S Stein, Pooja Jadiya, Xiaoming Zhang, Jared M McLendon, Gabrielle M Abouassaly, Nathan H Witmer, Ethan J Anderson, John W Elrod, Ryan L Boudreau. Cell Rep 2018
59
20

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
20

Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.
T Kondo, S Plaza, J Zanet, E Benrabah, P Valenti, Y Hashimoto, S Kobayashi, F Payre, Y Kageyama. Science 2010
218
20

An upstream open reading frame is essential for feedback regulation of ascorbate biosynthesis in Arabidopsis.
William A Laing, Marcela Martínez-Sánchez, Michele A Wright, Sean M Bulley, Di Brewster, Andrew P Dare, Maysoon Rassam, Daisy Wang, Roy Storey, Richard C Macknight,[...]. Plant Cell 2015
81
20

The Emerging World of Small ORFs.
Roger P Hellens, Chris M Brown, Matthew A W Chisnall, Peter M Waterhouse, Richard C Macknight. Trends Plant Sci 2016
45
20

Soybean ENOD40 encodes two peptides that bind to sucrose synthase.
Horst Rohrig, Jurgen Schmidt, Edvins Miklashevichs, Jeff Schell, Michael John. Proc Natl Acad Sci U S A 2002
111
20

Gene expression regulation by upstream open reading frames and human disease.
Cristina Barbosa, Isabel Peixeiro, Luísa Romão. PLoS Genet 2013
240
20

Mining for Micropeptides.
Catherine A Makarewich, Eric N Olson. Trends Cell Biol 2017
74
20

Primary transcripts of microRNAs encode regulatory peptides.
Dominique Lauressergues, Jean-Malo Couzigou, Hélène San Clemente, Yves Martinez, Christophe Dunand, Guillaume Bécard, Jean-Philippe Combier. Nature 2015
164
20

Classification and function of small open reading frames.
Juan-Pablo Couso, Pedro Patraquim. Nat Rev Mol Cell Biol 2017
85
20

Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes.
Nicholas T Ingolia, Gloria A Brar, Noam Stern-Ginossar, Michael S Harris, Gaëlle J S Talhouarne, Sarah E Jackson, Mark R Wills, Jonathan S Weissman. Cell Rep 2014
336
20

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling.
Anil Raj, Sidney H Wang, Heejung Shim, Arbel Harpak, Yang I Li, Brett Engelmann, Matthew Stephens, Yoav Gilad, Jonathan K Pritchard. Elife 2016
63
20

A peptide encoded by circular form of LINC-PINT suppresses oncogenic transcriptional elongation in glioblastoma.
Maolei Zhang, Kun Zhao, Xiaoping Xu, Yibing Yang, Sheng Yan, Ping Wei, Hui Liu, Jianbo Xu, Feizhe Xiao, Huangkai Zhou,[...]. Nat Commun 2018
191
20

Extensive identification and analysis of conserved small ORFs in animals.
Sebastian D Mackowiak, Henrik Zauber, Chris Bielow, Denise Thiel, Kamila Kutz, Lorenzo Calviello, Guido Mastrobuoni, Nikolaus Rajewsky, Stefan Kempa, Matthias Selbach,[...]. Genome Biol 2015
86
20

Toddler: an embryonic signal that promotes cell movement via Apelin receptors.
Andrea Pauli, Megan L Norris, Eivind Valen, Guo-Liang Chew, James A Gagnon, Steven Zimmerman, Andrew Mitchell, Jiao Ma, Julien Dubrulle, Deepak Reyon,[...]. Science 2014
299
20



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.