A citation-based method for searching scientific literature

Eugene Oh, David Akopian, Michael Rape. Annu Rev Cell Dev Biol 2018
Times Cited: 127







List of co-cited articles
1291 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The ubiquitin code.
David Komander, Michael Rape. Annu Rev Biochem 2012
35

Ubiquitin modifications.
Kirby N Swatek, David Komander. Cell Res 2016
810
32

Mechanisms of Deubiquitinase Specificity and Regulation.
Tycho E T Mevissen, David Komander. Annu Rev Biochem 2017
430
23

Assembly and Function of Heterotypic Ubiquitin Chains in Cell-Cycle and Protein Quality Control.
Richard G Yau, Kerstin Doerner, Erick R Castellanos, Diane L Haakonsen, Achim Werner, Nan Wang, X William Yang, Nadia Martinez-Martin, Marissa L Matsumoto, Vishva M Dixit,[...]. Cell 2017
148
21

Breaking the chains: deubiquitylating enzyme specificity begets function.
Michael J Clague, Sylvie Urbé, David Komander. Nat Rev Mol Cell Biol 2019
259
18

The ubiquitin system.
A Hershko, A Ciechanover. Annu Rev Biochem 1998
17

The increasing complexity of the ubiquitin code.
Richard Yau, Michael Rape. Nat Cell Biol 2016
517
17

Enhanced protein degradation by branched ubiquitin chains.
Hermann-Josef Meyer, Michael Rape. Cell 2014
282
16


Systematic and quantitative assessment of the ubiquitin-modified proteome.
Woong Kim, Eric J Bennett, Edward L Huttlin, Ailan Guo, Jing Li, Anthony Possemato, Mathew E Sowa, Ramin Rad, John Rush, Michael J Comb,[...]. Mol Cell 2011
14

Branching Out: Improved Signaling by Heterotypic Ubiquitin Chains.
Diane L Haakonsen, Michael Rape. Trends Cell Biol 2019
64
20

Ubiquitin Ligases: Structure, Function, and Regulation.
Ning Zheng, Nitzan Shabek. Annu Rev Biochem 2017
522
13

RING domain E3 ubiquitin ligases.
Raymond J Deshaies, Claudio A P Joazeiro. Annu Rev Biochem 2009
13

Activity-based E3 ligase profiling uncovers an E3 ligase with esterification activity.
Kuan-Chuan Pao, Nicola T Wood, Axel Knebel, Karim Rafie, Mathew Stanley, Peter D Mabbitt, Ramasubramanian Sundaramoorthy, Kay Hofmann, Daan M F van Aalten, Satpal Virdee. Nature 2018
100
13


Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains.
Christoph H Emmerich, Alban Ordureau, Sam Strickson, J Simon C Arthur, Patrick G A Pedrioli, David Komander, Philip Cohen. Proc Natl Acad Sci U S A 2013
291
12

Structure and Function of the 26S Proteasome.
Jared A M Bard, Ellen A Goodall, Eric R Greene, Erik Jonsson, Ken C Dong, Andreas Martin. Annu Rev Biochem 2018
279
11

K63 ubiquitylation triggers proteasomal degradation by seeding branched ubiquitin chains.
Fumiaki Ohtake, Hikaru Tsuchiya, Yasushi Saeki, Keiji Tanaka. Proc Natl Acad Sci U S A 2018
118
10


Ubiquitin chain diversity at a glance.
Masato Akutsu, Ivan Dikic, Anja Bremm. J Cell Sci 2016
261
10


A proteomics approach to understanding protein ubiquitination.
Junmin Peng, Daniel Schwartz, Joshua E Elias, Carson C Thoreen, Dongmei Cheng, Gerald Marsischky, Jeroen Roelofs, Daniel Finley, Steven P Gygi. Nat Biotechnol 2003
8

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.
Ping Xu, Duc M Duong, Nicholas T Seyfried, Dongmei Cheng, Yang Xie, Jessica Robert, John Rush, Mark Hochstrasser, Daniel Finley, Junmin Peng. Cell 2009
790
8

Building ubiquitin chains: E2 enzymes at work.
Yihong Ye, Michael Rape. Nat Rev Mol Cell Biol 2009
642
8

The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.
Katherine E Wickliffe, Sonja Lorenz, David E Wemmer, John Kuriyan, Michael Rape. Cell 2011
212
8

Ubiquitin-like Protein Conjugation: Structures, Chemistry, and Mechanism.
Laurent Cappadocia, Christopher D Lima. Chem Rev 2018
204
8

Selective Small Molecule Induced Degradation of the BET Bromodomain Protein BRD4.
Michael Zengerle, Kwok-Ho Chan, Alessio Ciulli. ACS Chem Biol 2015
457
8

Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.
Lingyan Jin, Adam Williamson, Sudeep Banerjee, Isabelle Philipp, Michael Rape. Cell 2008
372
8

Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells.
Jan Krönke, Namrata D Udeshi, Anupama Narla, Peter Grauman, Slater N Hurst, Marie McConkey, Tanya Svinkina, Dirk Heckl, Eamon Comer, Xiaoyu Li,[...]. Science 2014
923
8

Insights into ubiquitin chain architecture using Ub-clipping.
Kirby N Swatek, Joanne L Usher, Anja F Kueck, Christina Gladkova, Tycho E T Mevissen, Jonathan N Pruneda, Tim Skern, David Komander. Nature 2019
87
9

Protacs: chimeric molecules that target proteins to the Skp1-Cullin-F box complex for ubiquitination and degradation.
K M Sakamoto, K B Kim, A Kumagai, F Mercurio, C M Crews, R J Deshaies. Proc Natl Acad Sci U S A 2001
774
8

Distinct proteostasis circuits cooperate in nuclear and cytoplasmic protein quality control.
Rahul S Samant, Christine M Livingston, Emily M Sontag, Judith Frydman. Nature 2018
86
8

Mechanism and regulation of the Lys6-selective deubiquitinase USP30.
Malte Gersch, Christina Gladkova, Alexander F Schubert, Martin A Michel, Sarah Maslen, David Komander. Nat Struct Mol Biol 2017
101
7

Post-translational regulation of ubiquitin signaling.
Lei Song, Zhao-Qing Luo. J Cell Biol 2019
86
8


Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination.
Ori Braten, Ido Livneh, Tamar Ziv, Arie Admon, Izhak Kehat, Lilac H Caspi, Hedva Gonen, Beatrice Bercovich, Adam Godzik, Samad Jahandideh,[...]. Proc Natl Acad Sci U S A 2016
96
7


Ubiquitination of serine, threonine, or lysine residues on the cytoplasmic tail can induce ERAD of MHC-I by viral E3 ligase mK3.
Xiaoli Wang, Roger A Herr, Wei-Jen Chua, Lonnie Lybarger, Emmanuel J H J Wiertz, Ted H Hansen. J Cell Biol 2007
203
7

E2 enzymes: more than just middle men.
Mikaela D Stewart, Tobias Ritterhoff, Rachel E Klevit, Peter S Brzovic. Cell Res 2016
239
7

Defining the human deubiquitinating enzyme interaction landscape.
Mathew E Sowa, Eric J Bennett, Steven P Gygi, J Wade Harper. Cell 2009
7

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
Guoqiang Xu, Jeremy S Paige, Samie R Jaffrey. Nat Biotechnol 2010
357
7

Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis.
Anna Plechanovová, Ellis G Jaffray, Michael H Tatham, James H Naismith, Ronald T Hay. Nature 2012
343
7

UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids.
Dawn M Wenzel, Alexei Lissounov, Peter S Brzovic, Rachel E Klevit. Nature 2011
355
7


Cell-fate determination by ubiquitin-dependent regulation of translation.
Achim Werner, Shintaro Iwasaki, Colleen A McGourty, Sofia Medina-Ruiz, Nia Teerikorpi, Indro Fedrigo, Nicholas T Ingolia, Michael Rape. Nature 2015
104
7

DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation.
Georg E Winter, Dennis L Buckley, Joshiawa Paulk, Justin M Roberts, Amanda Souza, Sirano Dhe-Paganon, James E Bradner. Science 2015
786
7

Structural insights into the catalysis and regulation of E3 ubiquitin ligases.
Lori Buetow, Danny T Huang. Nat Rev Mol Cell Biol 2016
259
7

Genome-wide CRISPR Analysis Identifies Substrate-Specific Conjugation Modules in ER-Associated Degradation.
Dara E Leto, David W Morgens, Lichao Zhang, Christopher P Walczak, Joshua E Elias, Michael C Bassik, Ron R Kopito. Mol Cell 2019
53
13

Mechanisms underlying ubiquitination.
C M Pickart. Annu Rev Biochem 2001
7

Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling.
Martin A Michel, Kirby N Swatek, Manuela K Hospenthal, David Komander. Mol Cell 2017
97
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.