A citation-based method for searching scientific literature

Mahdi Rivandi, John W M Martens, Antoinette Hollestelle. Front Genet 2018
Times Cited: 4







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mapping and analysis of chromatin state dynamics in nine human cell types.
Jason Ernst, Pouya Kheradpour, Tarjei S Mikkelsen, Noam Shoresh, Lucas D Ward, Charles B Epstein, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael Coyne,[...]. Nature 2011
50

Association analysis identifies 65 new breast cancer risk loci.
Kyriaki Michailidou, Sara Lindström, Joe Dennis, Jonathan Beesley, Shirley Hui, Siddhartha Kar, Audrey Lemaçon, Penny Soucy, Dylan Glubb, Asha Rostamianfar,[...]. Nature 2017
505
50

The Post-GWAS Era: From Association to Function.
Michael D Gallagher, Alice S Chen-Plotkin. Am J Hum Genet 2018
232
50

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.
Danielle Welter, Jacqueline MacArthur, Joannella Morales, Tony Burdett, Peggy Hall, Heather Junkins, Alan Klemm, Paul Flicek, Teri Manolio, Lucia Hindorff,[...]. Nucleic Acids Res 2014
50

Systematic localization of common disease-associated variation in regulatory DNA.
Matthew T Maurano, Richard Humbert, Eric Rynes, Robert E Thurman, Eric Haugen, Hao Wang, Alex P Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer Brody,[...]. Science 2012
50

Functional mapping and annotation of genetic associations with FUMA.
Kyoko Watanabe, Erdogan Taskesen, Arjen van Bochoven, Danielle Posthuma. Nat Commun 2017
748
50

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Maxim V Kuleshov, Matthew R Jones, Andrew D Rouillard, Nicolas F Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L Jenkins, Kathleen M Jagodnik, Alexander Lachmann,[...]. Nucleic Acids Res 2016
50

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
25



Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
942
25

SNP-mediated disruption of CTCF binding at the IFITM3 promoter is associated with risk of severe influenza in humans.
E Kaitlynn Allen, Adrienne G Randolph, Tushar Bhangale, Pranay Dogra, Maikke Ohlson, Christine M Oshansky, Anthony E Zamora, John P Shannon, David Finkelstein, Amy Dressen,[...]. Nat Med 2017
96
25

Nucleosome positioning and histone modifications define relationships between regulatory elements and nearby gene expression in breast epithelial cells.
Suhn Kyong Rhie, Dennis J Hazelett, Simon G Coetzee, Chunli Yan, Houtan Noushmehr, Gerhard A Coetzee. BMC Genomics 2014
33
25

Interchromosomal interactions and olfactory receptor choice.
Stavros Lomvardas, Gilad Barnea, David J Pisapia, Monica Mendelsohn, Jennifer Kirkland, Richard Axel. Cell 2006
431
25

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
25


CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator.
Hanlim Moon, Galina Filippova, Dmitry Loukinov, Elena Pugacheva, Qi Chen, Sheryl T Smith, Adam Munhall, Britta Grewe, Marek Bartkuhn, Rüdiger Arnold,[...]. EMBO Rep 2005
183
25


Enrichment of risk SNPs in regulatory regions implicate diverse tissues in Parkinson's disease etiology.
Simon G Coetzee, Steven Pierce, Patrik Brundin, Lena Brundin, Dennis J Hazelett, Gerhard A Coetzee. Sci Rep 2016
36
25

deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
25

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
25

Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.
Ryuichiro Nakato, Katsuhiko Shirahige. Brief Bioinform 2017
63
25

Mapping RNA-seq Reads with STAR.
Alexander Dobin, Thomas R Gingeras. Curr Protoc Bioinformatics 2015
377
25

The role of enhancers in cancer.
Inderpreet Sur, Jussi Taipale. Nat Rev Cancer 2016
167
25

US incidence of breast cancer subtypes defined by joint hormone receptor and HER2 status.
Nadia Howlader, Sean F Altekruse, Christopher I Li, Vivien W Chen, Christina A Clarke, Lynn A G Ries, Kathleen A Cronin. J Natl Cancer Inst 2014
597
25

Histone modifications at human enhancers reflect global cell-type-specific gene expression.
Nathaniel D Heintzman, Gary C Hon, R David Hawkins, Pouya Kheradpour, Alexander Stark, Lindsey F Harp, Zhen Ye, Leonard K Lee, Rhona K Stuart, Christina W Ching,[...]. Nature 2009
25

CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops.
Yu Guo, Andrew A Perez, Dennis J Hazelett, Gerhard A Coetzee, Suhn Kyong Rhie, Peggy J Farnham. Genome Biol 2018
32
25

Haploview: analysis and visualization of LD and haplotype maps.
J C Barrett, B Fry, J Maller, M J Daly. Bioinformatics 2005
25

motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites.
Simon G Coetzee, Gerhard A Coetzee, Dennis J Hazelett. Bioinformatics 2015
89
25

The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer.
Mark M Pomerantz, Nasim Ahmadiyeh, Li Jia, Paula Herman, Michael P Verzi, Harshavardhan Doddapaneni, Christine A Beckwith, Jennifer A Chan, Adam Hills, Matt Davis,[...]. Nat Genet 2009
498
25


voom: Precision weights unlock linear model analysis tools for RNA-seq read counts.
Charity W Law, Yunshun Chen, Wei Shi, Gordon K Smyth. Genome Biol 2014
25

The Glucocorticoid Receptor Regulates the ANGPTL4 Gene in a CTCF-Mediated Chromatin Context in Human Hepatic Cells.
Masafumi Nakamoto, Ko Ishihara, Takehisa Watanabe, Akiyuki Hirosue, Shinjiro Hino, Masanori Shinohara, Hideki Nakayama, Mitsuyoshi Nakao. PLoS One 2017
8
25

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.
Matthias Merkenschlager, Elphège P Nora. Annu Rev Genomics Hum Genet 2016
234
25

Parkinson's disease genetic risk in a midbrain neuronal cell line.
Steven E Pierce, Trevor Tyson, Alix Booms, Jordan Prahl, Gerhard A Coetzee. Neurobiol Dis 2018
15
25

Germline mutations and polymorphisms in the origins of cancers in women.
Kim M Hirshfield, Timothy R Rebbeck, Arnold J Levine. J Oncol 2010
25
25

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
Stephen G Landt, Georgi K Marinov, Anshul Kundaje, Pouya Kheradpour, Florencia Pauli, Serafim Batzoglou, Bradley E Bernstein, Peter Bickel, James B Brown, Philip Cayting,[...]. Genome Res 2012
25

Functional enhancers at the gene-poor 8q24 cancer-linked locus.
Li Jia, Gilad Landan, Mark Pomerantz, Rami Jaschek, Paula Herman, David Reich, Chunli Yan, Omar Khalid, Phil Kantoff, William Oh,[...]. PLoS Genet 2009
178
25

A map of the cis-regulatory sequences in the mouse genome.
Yin Shen, Feng Yue, David F McCleary, Zhen Ye, Lee Edsall, Samantha Kuan, Ulrich Wagner, Jesse Dixon, Leonard Lee, Victor V Lobanenkov,[...]. Nature 2012
904
25

Comprehensive functional annotation of seventy-one breast cancer risk Loci.
Suhn Kyong Rhie, Simon G Coetzee, Houtan Noushmehr, Chunli Yan, Jae Mun Kim, Christopher A Haiman, Gerhard A Coetzee. PLoS One 2013
36
25

From candidate gene studies to GWAS and post-GWAS analyses in breast cancer.
Laura Fachal, Alison M Dunning. Curr Opin Genet Dev 2015
58
25

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
25


Widespread plasticity in CTCF occupancy linked to DNA methylation.
Hao Wang, Matthew T Maurano, Hongzhu Qu, Katherine E Varley, Jason Gertz, Florencia Pauli, Kristen Lee, Theresa Canfield, Molly Weaver, Richard Sandstrom,[...]. Genome Res 2012
339
25

MCF-7 cells--changing the course of breast cancer research and care for 45 years.
Adrian V Lee, Steffi Oesterreich, Nancy E Davidson. J Natl Cancer Inst 2015
89
25

STRING v10: protein-protein interaction networks, integrated over the tree of life.
Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, Kristoffer Forslund, Davide Heller, Jaime Huerta-Cepas, Milan Simonovic, Alexander Roth, Alberto Santos, Kalliopi P Tsafou,[...]. Nucleic Acids Res 2015
25

MERIT40 controls BRCA1-Rap80 complex integrity and recruitment to DNA double-strand breaks.
Genze Shao, Jeffrey Patterson-Fortin, Troy E Messick, Dan Feng, Niraj Shanbhag, Yingqun Wang, Roger A Greenberg. Genes Dev 2009
113
25


High-throughput identification of noncoding functional SNPs via type IIS enzyme restriction.
Gang Li, Marta Martínez-Bonet, Di Wu, Yu Yang, Jing Cui, Hung N Nguyen, Pierre Cunin, Anaïs Levescot, Ming Bai, Harm-Jan Westra,[...]. Nat Genet 2018
13
25

Targeting the Hippo Pathway and Cancer through the TEAD Family of Transcription Factors.
Jeffrey K Holden, Christian N Cunningham. Cancers (Basel) 2018
75
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.