A citation-based method for searching scientific literature

Mengting Ding, Hengji Zhan, Xinhui Liao, Aolin Li, Yucheng Zhong, Qunjun Gao, Yuchen Liu, Weiren Huang, Zhiming Cai. Int J Biol Sci 2018
Times Cited: 15







List of co-cited articles
155 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Widespread transcription at neuronal activity-regulated enhancers.
Tae-Kyung Kim, Martin Hemberg, Jesse M Gray, Allen M Costa, Daniel M Bear, Jing Wu, David A Harmin, Mike Laptewicz, Kellie Barbara-Haley, Scott Kuersten,[...]. Nature 2010
33

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation.
Chen-Lin Hsieh, Teng Fei, Yiwen Chen, Tiantian Li, Yanfei Gao, Xiaodong Wang, Tong Sun, Christopher J Sweeney, Gwo-Shu Mary Lee, Shaoyong Chen,[...]. Proc Natl Acad Sci U S A 2014
235
33

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation.
Wenbo Li, Dimple Notani, Qi Ma, Bogdan Tanasa, Esperanza Nunez, Aaron Yun Chen, Daria Merkurjev, Jie Zhang, Kenneth Ohgi, Xiaoyuan Song,[...]. Nature 2013
634
33

Enhancer RNA facilitates NELF release from immediate early genes.
Katie Schaukowitch, Jae-Yeol Joo, Xihui Liu, Jonathan K Watts, Carlos Martinez, Tae-Kyung Kim. Mol Cell 2014
257
33

An atlas of active enhancers across human cell types and tissues.
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki,[...]. Nature 2014
33

Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer.
Zhao Zhang, Joo-Hyung Lee, Hang Ruan, Youqiong Ye, Joanna Krakowiak, Qingsong Hu, Yu Xiang, Jing Gong, Bingying Zhou, Li Wang,[...]. Nat Commun 2019
85
33

Oestrogen promotes tumorigenesis of bladder cancer by inducing the enhancer RNA-eGREB1.
Mengting Ding, Yuhan Liu, Jianfa Li, Lin Yao, Xinhui Liao, Haibiao Xie, Kang Yang, Qun Zhou, Yuchen Liu, Weiren Huang,[...]. J Cell Mol Med 2018
12
41

Enhancer RNAs and regulated transcriptional programs.
Michael T Y Lam, Wenbo Li, Michael G Rosenfeld, Christopher K Glass. Trends Biochem Sci 2014
328
26

Noncoding transcription at enhancers: general principles and functional models.
Gioacchino Natoli, Jean-Christophe Andrau. Annu Rev Genet 2012
263
26

Epstein-Barr virus super-enhancer eRNAs are essential for MYC oncogene expression and lymphoblast proliferation.
Jun Liang, Hufeng Zhou, Catherine Gerdt, Min Tan, Tyler Colson, Kenneth M Kaye, Elliott Kieff, Bo Zhao. Proc Natl Acad Sci U S A 2016
53
26

Enhancer transcripts mark active estrogen receptor binding sites.
Nasun Hah, Shino Murakami, Anusha Nagari, Charles G Danko, W Lee Kraus. Genome Res 2013
320
26

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.
Leighton J Core, André L Martins, Charles G Danko, Colin T Waters, Adam Siepel, John T Lis. Nat Genet 2014
364
26

Activation of P-TEFb by Androgen Receptor-Regulated Enhancer RNAs in Castration-Resistant Prostate Cancer.
Yu Zhao, Liguo Wang, Shancheng Ren, Lan Wang, Patrick R Blackburn, Melissa S McNulty, Xu Gao, Meng Qiao, Robert L Vessella, Manish Kohli,[...]. Cell Rep 2016
68
26

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.
Fan Lai, Ulf A Orom, Matteo Cesaroni, Malte Beringer, Dylan J Taatjes, Gerd A Blobel, Ramin Shiekhattar. Nature 2013
595
26

Integrator mediates the biogenesis of enhancer RNAs.
Fan Lai, Alessandro Gardini, Anda Zhang, Ramin Shiekhattar. Nature 2015
159
26

AP001056.1, A Prognosis-Related Enhancer RNA in Squamous Cell Carcinoma of the Head and Neck.
Xiaolian Gu, Lixiao Wang, Linda Boldrup, Philip J Coates, Robin Fahraeus, Nicola Sgaramella, Torben Wilms, Karin Nylander. Cancers (Basel) 2019
27
26

Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.
Michael T Y Lam, Han Cho, Hanna P Lesch, David Gosselin, Sven Heinz, Yumiko Tanaka-Oishi, Christopher Benner, Minna U Kaikkonen, Aneeza S Kim, Mika Kosaka,[...]. Nature 2013
387
26

Enhancers as non-coding RNA transcription units: recent insights and future perspectives.
Wenbo Li, Dimple Notani, Michael G Rosenfeld. Nat Rev Genet 2016
398
26

CRISPR-Cas13a Targeting the Enhancer RNA-SMAD7e Inhibits Bladder Cancer Development Both in vitro and in vivo.
Wenan Che, Shanting Ye, Aoxiang Cai, Xiaojuan Cui, Yuandong Sun. Front Mol Biosci 2020
10
40

A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies.
Carsten Bahr, Lisa von Paleske, Veli V Uslu, Silvia Remeseiro, Naoya Takayama, Stanley W Ng, Alex Murison, Katja Langenfeld, Massimo Petretich, Roberta Scognamiglio,[...]. Nature 2018
142
20

Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA.
Dong Wang, Ivan Garcia-Bassets, Chris Benner, Wenbo Li, Xue Su, Yiming Zhou, Jinsong Qiu, Wen Liu, Minna U Kaikkonen, Kenneth A Ohgi,[...]. Nature 2011
618
20

A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.
Han Chen, Chunyan Li, Xinxin Peng, Zhicheng Zhou, John N Weinstein, Han Liang. Cell 2018
134
20

Inflammation-sensitive super enhancers form domains of coordinately regulated enhancer RNAs.
Nasun Hah, Chris Benner, Ling-Wa Chong, Ruth T Yu, Michael Downes, Ronald M Evans. Proc Natl Acad Sci U S A 2015
104
20

The enhancer RNA ARIEL activates the oncogenic transcriptional program in T-cell acute lymphoblastic leukemia.
Shi Hao Tan, Wei Zhong Leong, Phuong Cao Thi Ngoc, Tze King Tan, Fatima Carla Bertulfo, Mei Chee Lim, Omer An, Zhenhua Li, Allen Eng Juh Yeoh, Melissa J Fullwood,[...]. Blood 2019
30
20

Transcription factor trapping by RNA in gene regulatory elements.
Alla A Sigova, Brian J Abraham, Xiong Ji, Benoit Molinie, Nancy M Hannett, Yang Eric Guo, Mohini Jangi, Cosmas C Giallourakis, Phillip A Sharp, Richard A Young. Science 2015
254
20

HPSE enhancer RNA promotes cancer progression through driving chromatin looping and regulating hnRNPU/p300/EGR1/HPSE axis.
Wanju Jiao, Yajun Chen, Huajie Song, Dan Li, Hong Mei, Feng Yang, Erhu Fang, Xiaojing Wang, Kai Huang, Liduan Zheng,[...]. Oncogene 2018
50
20

Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers.
Xiaoyang Zhang, Peter S Choi, Joshua M Francis, Marcin Imielinski, Hideo Watanabe, Andrew D Cherniack, Matthew Meyerson. Nat Genet 2016
209
20

eRNAs are required for p53-dependent enhancer activity and gene transcription.
Carlos A Melo, Jarno Drost, Patrick J Wijchers, Harmen van de Werken, Elzo de Wit, Joachim A F Oude Vrielink, Ran Elkon, Sónia A Melo, Nicolas Léveillé, Raghu Kalluri,[...]. Mol Cell 2013
375
20

Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases.
Yasuhiro Murakawa, Masahito Yoshihara, Hideya Kawaji, Miki Nishikawa, Hatem Zayed, Harukazu Suzuki, Fantom Consortium, Yoshihide Hayashizaki. Trends Genet 2016
57
20

A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans.
Pei-Fang Tsai, Stefania Dell'Orso, Joseph Rodriguez, Karinna O Vivanco, Kyung-Dae Ko, Kan Jiang, Aster H Juan, Aishe A Sarshad, Laura Vian, Michelle Tran,[...]. Mol Cell 2018
76
20

Genome-wide mapping and analysis of chromosome architecture.
Anthony D Schmitt, Ming Hu, Bing Ren. Nat Rev Mol Cell Biol 2016
194
20

eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci.
Kambiz Mousavi, Hossein Zare, Stefania Dell'orso, Lars Grontved, Gustavo Gutierrez-Cruz, Assia Derfoul, Gordon L Hager, Vittorio Sartorelli. Mol Cell 2013
317
20

A large fraction of extragenic RNA pol II transcription sites overlap enhancers.
Francesca De Santa, Iros Barozzi, Flore Mietton, Serena Ghisletti, Sara Polletti, Betsabeh Khoramian Tusi, Heiko Muller, Jiannis Ragoussis, Chia-Lin Wei, Gioacchino Natoli. PLoS Biol 2010
568
20


CCAT1 is an enhancer-templated RNA that predicts BET sensitivity in colorectal cancer.
Mark L McCleland, Kathryn Mesh, Edward Lorenzana, Vivek S Chopra, Ehud Segal, Colin Watanabe, Benjamin Haley, Oleg Mayba, Murat Yaylaoglu, Florian Gnad,[...]. J Clin Invest 2016
146
20

Deposition of 5-Methylcytosine on Enhancer RNAs Enables the Coactivator Function of PGC-1α.
Francesca Aguilo, SiDe Li, Natarajan Balasubramaniyan, Ana Sancho, Sabina Benko, Fan Zhang, Ajay Vashisht, Madhumitha Rengasamy, Blanca Andino, Chih-Hung Chen,[...]. Cell Rep 2016
69
20

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.
Frederic Koch, Romain Fenouil, Marta Gut, Pierre Cauchy, Thomas K Albert, Joaquin Zacarias-Cabeza, Salvatore Spicuglia, Albane Lamy de la Chapelle, Martin Heidemann, Corinna Hintermair,[...]. Nat Struct Mol Biol 2011
215
20

Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus.
Jian-Feng Xiang, Qing-Fei Yin, Tian Chen, Yang Zhang, Xiao-Ou Zhang, Zheng Wu, Shaofeng Zhang, Hai-Bin Wang, Junhui Ge, Xuhua Lu,[...]. Cell Res 2014
458
20

Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element.
Marc R Mansour, Brian J Abraham, Lars Anders, Alla Berezovskaya, Alejandro Gutierrez, Adam D Durbin, Julia Etchin, Lee Lawton, Stephen E Sallan, Lewis B Silverman,[...]. Science 2014
453
20

Perturbing Enhancer Activity in Cancer Therapy.
Feda H Hamdan, Steven A Johnsen. Cancers (Basel) 2019
10
30

High expression of enhancer RNA MARC1 or its activation by DHT is associated with the malignant behavior in bladder cancer.
Yuhan Liu, Mengting Ding, Xinhui Liao, Qunjun Gao, Anbang He, Baoer Liu, Kun Hu, Haibiao Xie, Qun Zhou, Hengji Zhan,[...]. Exp Cell Res 2018
5
60


Prognostic value of sex-hormone receptor expression in non-muscle-invasive bladder cancer.
Jong Kil Nam, Sung Woo Park, Sang Don Lee, Moon Kee Chung. Yonsei Med J 2014
34
20

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
20

Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
20

Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.
Minna U Kaikkonen, Nathanael J Spann, Sven Heinz, Casey E Romanoski, Karmel A Allison, Joshua D Stender, Hyun B Chun, David F Tough, Rab K Prinjha, Christopher Benner,[...]. Mol Cell 2013
436
20

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.
Rui Xiao, Jia-Yu Chen, Zhengyu Liang, Daji Luo, Geng Chen, Zhi John Lu, Yang Chen, Bing Zhou, Hairi Li, Xian Du,[...]. Cell 2019
113
13

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.
Erik Arner, Carsten O Daub, Kristoffer Vitting-Seerup, Robin Andersson, Berit Lilje, Finn Drabløs, Andreas Lennartsson, Michelle Rönnerblad, Olga Hrydziuszko, Morana Vitezic,[...]. Science 2015
353
13

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.
Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, David Kazadi, Jianbo Sun, Alexander Federation, Jaime Chao, Oliver Elliott, Zhi-Ping Liu,[...]. Cell 2015
268
13

The role of enhancers in cancer.
Inderpreet Sur, Jussi Taipale. Nat Rev Cancer 2016
195
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.