A citation-based method for searching scientific literature

Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
Times Cited: 766







List of co-cited articles
386 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Using DeepLabCut for 3D markerless pose estimation across species and behaviors.
Tanmay Nath, Alexander Mathis, An Chi Chen, Amir Patel, Matthias Bethge, Mackenzie Weygandt Mathis. Nat Protoc 2019
237
22

Fast animal pose estimation using deep neural networks.
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, Joshua W Shaevitz. Nat Methods 2019
169
19

DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.
Jacob M Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R Costelloe, Iain D Couzin. Elife 2019
118
14

Neuroscience Needs Behavior: Correcting a Reductionist Bias.
John W Krakauer, Asif A Ghazanfar, Alex Gomez-Marin, Malcolm A MacIver, David Poeppel. Neuron 2017
457
11

Mapping Sub-Second Structure in Mouse Behavior.
Alexander B Wiltschko, Matthew J Johnson, Giuliano Iurilli, Ralph E Peterson, Jesse M Katon, Stan L Pashkovski, Victoria E Abraira, Ryan P Adams, Sandeep Robert Datta. Neuron 2015
246
10

Deep learning tools for the measurement of animal behavior in neuroscience.
Mackenzie Weygandt Mathis, Alexander Mathis. Curr Opin Neurobiol 2020
77
12

Quantifying behavior to understand the brain.
Talmo D Pereira, Joshua W Shaevitz, Mala Murthy. Nat Neurosci 2020
44
22

Computational Neuroethology: A Call to Action.
Sandeep Robert Datta, David J Anderson, Kristin Branson, Pietro Perona, Andrew Leifer. Neuron 2019
110
9

OpenPose: Realtime Multi-Person 2D Pose Estimation Using Part Affinity Fields.
Zhe Cao, Gines Hidalgo, Tomas Simon, Shih-En Wei, Yaser Sheikh. IEEE Trans Pattern Anal Mach Intell 2021
269
8

A Primer on Motion Capture with Deep Learning: Principles, Pitfalls, and Perspectives.
Alexander Mathis, Steffen Schneider, Jessy Lauer, Mackenzie Weygandt Mathis. Neuron 2020
34
23



idtracker.ai: tracking all individuals in small or large collectives of unmarked animals.
Francisco Romero-Ferrero, Mattia G Bergomi, Robert C Hinz, Francisco J H Heras, Gonzalo G de Polavieja. Nat Methods 2019
67
10

DeepFly3D, a deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila.
Semih Günel, Helge Rhodin, Daniel Morales, João Campagnolo, Pavan Ramdya, Pascal Fua. Elife 2019
48
12

Toward a science of computational ethology.
David J Anderson, Pietro Perona. Neuron 2014
176
6

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
627
6

Real-time, low-latency closed-loop feedback using markerless posture tracking.
Gary A Kane, Gonçalo Lopes, Jonny L Saunders, Alexander Mathis, Mackenzie W Mathis. Elife 2020
25
24

Anipose: A toolkit for robust markerless 3D pose estimation.
Pierre Karashchuk, Katie L Rupp, Evyn S Dickinson, Sarah Walling-Bell, Elischa Sanders, Eiman Azim, Bingni W Brunton, John C Tuthill. Cell Rep 2021
12
50

Deep learning.
Yann LeCun, Yoshua Bengio, Geoffrey Hinton. Nature 2015
5

idTracker: tracking individuals in a group by automatic identification of unmarked animals.
Alfonso Pérez-Escudero, Julián Vicente-Page, Robert C Hinz, Sara Arganda, Gonzalo G de Polavieja. Nat Methods 2014
274
5

Waking State: Rapid Variations Modulate Neural and Behavioral Responses.
Matthew J McGinley, Martin Vinck, Jacob Reimer, Renata Batista-Brito, Edward Zagha, Cathryn R Cadwell, Andreas S Tolias, Jessica A Cardin, David A McCormick. Neuron 2015
338
5

Automated markerless pose estimation in freely moving macaques with OpenMonkeyStudio.
Praneet C Bala, Benjamin R Eisenreich, Seng Bum Michael Yoo, Benjamin Y Hayden, Hyun Soo Park, Jan Zimmermann. Nat Commun 2020
33
15

JAABA: interactive machine learning for automatic annotation of animal behavior.
Mayank Kabra, Alice A Robie, Marta Rivera-Alba, Steven Branson, Kristin Branson. Nat Methods 2013
227
5


Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
500
5

Geometric deep learning enables 3D kinematic profiling across species and environments.
Timothy W Dunn, Jesse D Marshall, Kyle S Severson, Diego E Aldarondo, David G C Hildebrand, Selmaan N Chettih, William L Wang, Amanda J Gellis, David E Carlson, Dmitriy Aronov,[...]. Nat Methods 2021
25
20

High-throughput ethomics in large groups of Drosophila.
Kristin Branson, Alice A Robie, John Bender, Pietro Perona, Michael H Dickinson. Nat Methods 2009
381
5

Facial expressions of emotion states and their neuronal correlates in mice.
Nate Dolensek, Daniel A Gehrlach, Alexandra S Klein, Nadine Gogolla. Science 2020
81
4

Muscle spindle feedback directs locomotor recovery and circuit reorganization after spinal cord injury.
Aya Takeoka, Isabel Vollenweider, Grégoire Courtine, Silvia Arber. Cell 2014
160
4

DREADDs for Neuroscientists.
Bryan L Roth. Neuron 2016
704
4

Multi-animal pose estimation, identification and tracking with DeepLabCut.
Jessy Lauer, Mu Zhou, Shaokai Ye, William Menegas, Steffen Schneider, Tanmay Nath, Mohammed Mostafizur Rahman, Valentina Di Santo, Daniel Soberanes, Guoping Feng,[...]. Nat Methods 2022
13
30

Big behavior: challenges and opportunities in a new era of deep behavior profiling.
Lukas von Ziegler, Oliver Sturman, Johannes Bohacek. Neuropsychopharmacology 2021
27
14

A neural substrate of prediction and reward.
W Schultz, P Dayan, P R Montague. Science 1997
4

Deep learning-based behavioral analysis reaches human accuracy and is capable of outperforming commercial solutions.
Oliver Sturman, Lukas von Ziegler, Christa Schläppi, Furkan Akyol, Mattia Privitera, Daria Slominski, Christina Grimm, Laetitia Thieren, Valerio Zerbi, Benjamin Grewe,[...]. Neuropsychopharmacology 2020
28
14

Anxiety Cells in a Hippocampal-Hypothalamic Circuit.
Jessica C Jimenez, Katy Su, Alexander R Goldberg, Victor M Luna, Jeremy S Biane, Gokhan Ordek, Pengcheng Zhou, Samantha K Ong, Matthew A Wright, Larry Zweifel,[...]. Neuron 2018
220
4

DeepEthogram, a machine learning pipeline for supervised behavior classification from raw pixels.
James P Bohnslav, Nivanthika K Wimalasena, Kelsey J Clausing, Yu Y Dai, David A Yarmolinsky, Tomás Cruz, Adam D Kashlan, M Eugenia Chiappe, Lauren L Orefice, Clifford J Woolf,[...]. Elife 2021
12
33

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat Neurosci 2013
506
4


The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice.
Cristina Segalin, Jalani Williams, Tomomi Karigo, May Hui, Moriel Zelikowsky, Jennifer J Sun, Pietro Perona, David J Anderson, Ann Kennedy. Elife 2021
13
30

Mapping the stereotyped behaviour of freely moving fruit flies.
Gordon J Berman, Daniel M Choi, William Bialek, Joshua W Shaevitz. J R Soc Interface 2014
196
4

Evaluation of 3D Markerless Motion Capture Accuracy Using OpenPose With Multiple Video Cameras.
Nobuyasu Nakano, Tetsuro Sakura, Kazuhiro Ueda, Leon Omura, Arata Kimura, Yoichi Iino, Senshi Fukashiro, Shinsuke Yoshioka. Front Sports Act Living 2020
34
11

Two-dimensional video-based analysis of human gait using pose estimation.
Jan Stenum, Cristina Rossi, Ryan T Roemmich. PLoS Comput Biol 2021
20
20

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
321
4

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
3

Differential effects of anti-Nogo-A antibody treatment and treadmill training in rats with incomplete spinal cord injury.
Irin C Maier, Ronaldo M Ichiyama, Grégoire Courtine, Lisa Schnell, Igor Lavrov, V Reggie Edgerton, Martin E Schwab. Brain 2009
119
3

Motor cortex feedback influences sensory processing by modulating network state.
Edward Zagha, Amanda E Casale, Robert N S Sachdev, Matthew J McGinley, David A McCormick. Neuron 2013
162
3

A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.
Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella,[...]. Nat Neurosci 2012
762
3


A synaptic and circuit basis for corollary discharge in the auditory cortex.
David M Schneider, Anders Nelson, Richard Mooney. Nature 2014
280
3

Distributed coding of choice, action and engagement across the mouse brain.
Nicholas A Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D Harris. Nature 2019
169
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.