A citation-based method for searching scientific literature

Yi-Chung Shen, Toshikazu Sasaki, Take Matsuyama, Takahiro Yamashita, Yoshinori Shichida, Takashi Okitsu, Yumiko Yamano, Akimori Wada, Toru Ishizuka, Hiromu Yawo, Yasushi Imamoto. Biochemistry 2018
Times Cited: 6







List of co-cited articles
11 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Synthetic retinal analogues modify the spectral and kinetic characteristics of microbial rhodopsin optogenetic tools.
N AzimiHashemi, K Erbguth, A Vogt, T Riemensperger, E Rauch, D Woodmansee, J Nagpal, M Brauner, M Sheves, A Fiala,[...]. Nat Commun 2014
26
50

Optogenetics in neural systems.
Ofer Yizhar, Lief E Fenno, Thomas J Davidson, Murtaza Mogri, Karl Deisseroth. Neuron 2011
973
50

Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.
Oliver P Ernst, David T Lodowski, Marcus Elstner, Peter Hegemann, Leonid S Brown, Hideki Kandori. Chem Rev 2014
523
50

Modulation of spectral properties and pump activity of proteorhodopsins by retinal analogues.
Srividya Ganapathy, Odette Bécheau, Hanka Venselaar, Siebren Frölich, Jeroen B van der Steen, Que Chen, Sarah Radwan, Johan Lugtenburg, Klaas J Hellingwerf, Huub J M de Groot,[...]. Biochem J 2015
22
33

Enhancement of the long-wavelength sensitivity of optogenetic microbial rhodopsins by 3,4-dehydroretinal.
Oleg A Sineshchekov, Elena G Govorunova, Jihong Wang, John L Spudich. Biochemistry 2012
22
33

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.
John Y Lin, Per Magne Knutsen, Arnaud Muller, David Kleinfeld, Roger Y Tsien. Nat Neurosci 2013
414
33

Alternative Formation of Red-Shifted Channelrhodopsins: Noncovalent Incorporation with Retinal-Based Enamine-Type Schiff Bases and Mutated Channelopsin.
Takashi Okitsu, Take Matsuyama, Takahiro Yamashita, Toru Ishizuka, Hiromu Yawo, Yasushi Imamoto, Yoshinori Shichida, Akimori Wada. Chem Pharm Bull (Tokyo) 2017
3
66

The microbial opsin family of optogenetic tools.
Feng Zhang, Johannes Vierock, Ofer Yizhar, Lief E Fenno, Satoshi Tsunoda, Arash Kianianmomeni, Matthias Prigge, Andre Berndt, John Cushman, Jürgen Polle,[...]. Cell 2011
304
33

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
892
33

Molecular determinants differentiating photocurrent properties of two channelrhodopsins from chlamydomonas.
Hongxia Wang, Yuka Sugiyama, Takuya Hikima, Eriko Sugano, Hiroshi Tomita, Tetsuo Takahashi, Toru Ishizuka, Hiromu Yawo. J Biol Chem 2009
115
33

Next-generation optical technologies for illuminating genetically targeted brain circuits.
Karl Deisseroth, Guoping Feng, Ania K Majewska, Gero Miesenböck, Alice Ting, Mark J Schnitzer. J Neurosci 2006
381
33

Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering.
Akimasa Kaneko, Keiichi Inoue, Keiichi Kojima, Hideki Kandori, Yuki Sudo. Biophys Rev 2017
7
16

Spectroscopic study of the transmembrane domain of a rhodopsin-phosphodiesterase fusion protein from a unicellular eukaryote.
Masahito Watari, Tatsuya Ikuta, Daichi Yamada, Wataru Shihoya, Kazuho Yoshida, Satoshi P Tsunoda, Osamu Nureki, Hideki Kandori. J Biol Chem 2019
10
16


Purification and Characterization of RhoPDE, a Retinylidene/Phosphodiesterase Fusion Protein and Potential Optogenetic Tool from the Choanoflagellate Salpingoeca rosetta.
Lindsey B Lamarche, Ramasamy P Kumar, Melissa M Trieu, Erin L Devine, Luke E Cohen-Abeles, Douglas L Theobald, Daniel D Oprian. Biochemistry 2017
20
16

Homologs of vertebrate Opn3 potentially serve as a light sensor in nonphotoreceptive tissue.
Mitsumasa Koyanagi, Eiichiro Takada, Takashi Nagata, Hisao Tsukamoto, Akihisa Terakita. Proc Natl Acad Sci U S A 2013
79
16

Rhodopsin guides fungal phototaxis.
J Saranak, K W Foster. Nature 1997
66
16

Rhodopsin-cyclases for photocontrol of cGMP/cAMP and 2.3 Å structure of the adenylyl cyclase domain.
Ulrike Scheib, Matthias Broser, Oana M Constantin, Shang Yang, Shiqiang Gao, Shatanik Mukherjee, Katja Stehfest, Georg Nagel, Christine E Gee, Peter Hegemann. Nat Commun 2018
27
16

Circadian clocks in changing weather and seasons: lessons from the picoalga Ostreococcus tauri.
Benjamin Pfeuty, Quentin Thommen, Florence Corellou, El Batoul Djouani-Tahri, Francois-Yves Bouget, Marc Lefranc. Bioessays 2012
16
16

Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.
Robert Lindner, Elisabeth Hartmann, Miroslaw Tarnawski, Andreas Winkler, Daniel Frey, Jochen Reinstein, Anton Meinhart, Ilme Schlichting. J Mol Biol 2017
28
16

Crystal structure of the guanylyl cyclase Cya2.
Annika Rauch, Martina Leipelt, Michael Russwurm, Clemens Steegborn. Proc Natl Acad Sci U S A 2008
80
16

Crystal structure of phosphodiesterase 9 shows orientation variation of inhibitor 3-isobutyl-1-methylxanthine binding.
Qing Huai, Huanchen Wang, Wei Zhang, Robert W Colman, Howard Robinson, Hengming Ke. Proc Natl Acad Sci U S A 2004
65
16

Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich. Annu Rev Biochem 2017
120
16


Engineering adenylate cyclases regulated by near-infrared window light.
Min-Hyung Ryu, In-Hye Kang, Mathew D Nelson, Tricia M Jensen, Anna I Lyuksyutova, Jessica Siltberg-Liberles, David M Raizen, Mark Gomelsky. Proc Natl Acad Sci U S A 2014
78
16

A unique choanoflagellate enzyme rhodopsin exhibits light-dependent cyclic nucleotide phosphodiesterase activity.
Kazuho Yoshida, Satoshi P Tsunoda, Leonid S Brown, Hideki Kandori. J Biol Chem 2017
40
16

The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase.
Jonathan A Winger, Emily R Derbyshire, Meindert H Lamers, Michael A Marletta, John Kuriyan. BMC Struct Biol 2008
74
16

Bistable retinal schiff base photodynamics of histidine kinase rhodopsin HKR1 from Chlamydomonas reinhardtii.
Alfons Penzkofer, Meike Luck, Tilo Mathes, Peter Hegemann. Photochem Photobiol 2014
13
16

The rhodopsin-guanylyl cyclase of the aquatic fungus Blastocladiella emersonii enables fast optical control of cGMP signaling.
Ulrike Scheib, Katja Stehfest, Christine E Gee, Heinz G Körschen, Roman Fudim, Thomas G Oertner, Peter Hegemann. Sci Signal 2015
48
16


Crystal structure of the red light-activated channelrhodopsin Chrimson.
Kazumasa Oda, Johannes Vierock, Satomi Oishi, Silvia Rodriguez-Rozada, Reiya Taniguchi, Keitaro Yamashita, J Simon Wiegert, Tomohiro Nishizawa, Peter Hegemann, Osamu Nureki. Nat Commun 2018
41
16


Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells.
Matthew Blain-Hartung, Nathan C Rockwell, Marcus V Moreno, Shelley S Martin, Fei Gan, Donald A Bryant, J Clark Lagarias. J Biol Chem 2018
34
16


"Vision" in single-celled algae.
Suneel Kateriya, Georg Nagel, Ernst Bamberg, Peter Hegemann. News Physiol Sci 2004
77
16

Modulation of cyclic nucleotide-mediated cellular signaling and gene expression using photoactivated adenylyl cyclase as an optogenetic tool.
Meenakshi Tanwar, Lohit Khera, Nemneineng Haokip, Rajeev Kaul, Aruna Naorem, Suneel Kateriya. Sci Rep 2017
9
16

Two-component cyclase opsins of green algae are ATP-dependent and light-inhibited guanylyl cyclases.
Yuehui Tian, Shiqiang Gao, Eva Laura von der Heyde, Armin Hallmann, Georg Nagel. BMC Biol 2018
18
16

Identification of bacterial guanylate cyclases.
Min-Hyung Ryu, Hwan Youn, In-Hye Kang, Mark Gomelsky. Proteins 2015
14
16

Molecular mechanism of photoactivation of a light-regulated adenylate cyclase.
Mio Ohki, Ayana Sato-Tomita, Shigeru Matsunaga, Mineo Iseki, Jeremy R H Tame, Naoya Shibayama, Sam-Yong Park. Proc Natl Acad Sci U S A 2017
20
16

Exchange of substrate and inhibitor specificities between adenylyl and guanylyl cyclases.
R K Sunahara, A Beuve, J J Tesmer, S R Sprang, D L Garbers, A G Gilman. J Biol Chem 1998
183
16

Biochemical Characterization of the Engineered Soluble Photoactivated Guanylate Cyclases from Microbes Expands Optogenetic Tools.
Meenakshi Tanwar, Komal Sharma, Preeti Moar, Suneel Kateriya. Appl Biochem Biotechnol 2018
4
25

A Cyclic GMP-Dependent K+ Channel in the Blastocladiomycete Fungus Blastocladiella emersonii.
Gabriela Mól Avelar, Talita Glaser, Guy Leonard, Thomas A Richards, Henning Ulrich, Suely L Gomes. Eukaryot Cell 2015
14
16


The trafficking of bacterial type rhodopsins into the Chlamydomonas eyespot and flagella is IFT mediated.
Mayanka Awasthi, Peeyush Ranjan, Komal Sharma, Sindhu Kandoth Veetil, Suneel Kateriya. Sci Rep 2016
13
16

Characterization of a novel signal transducer element intrinsic to class IIIa/b adenylate cyclases and guanylate cyclases.
Miriam Ziegler, Jens Bassler, Stephanie Beltz, Anita Schultz, Andrei N Lupas, Joachim E Schultz. FEBS J 2017
13
16

Rhodopsin-mediated photoreception in cryptophyte flagellates.
Oleg A Sineshchekov, Elena G Govorunova, Kwang-Hwan Jung, Stefan Zauner, Uwe-G Maier, John L Spudich. Biophys J 2005
45
16

Biological insights from structures of two-component proteins.
Rong Gao, Ann M Stock. Annu Rev Microbiol 2009
497
16


Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase.
Oskar Berntsson, Ralph P Diensthuber, Matthijs R Panman, Alexander Björling, Emil Gustavsson, Maria Hoernke, Ashley J Hughes, Léocadie Henry, Stephan Niebling, Heikki Takala,[...]. Nat Commun 2017
34
16

A photochromic histidine kinase rhodopsin (HKR1) that is bimodally switched by ultraviolet and blue light.
Meike Luck, Tilo Mathes, Sara Bruun, Roman Fudim, Rolf Hagedorn, Tra My Tran Nguyen, Suneel Kateriya, John T M Kennis, Peter Hildebrandt, Peter Hegemann. J Biol Chem 2012
73
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.