A citation-based method for searching scientific literature

Yong-Li Xiao, Lili Ren, Xi Zhang, Li Qi, John C Kash, Yan Xiao, Fan Wu, Jianwei Wang, Jeffery K Taubenberger. mSphere 2018
Times Cited: 8







List of co-cited articles
22 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Viral quasispecies evolution.
Esteban Domingo, Julie Sheldon, Celia Perales. Microbiol Mol Biol Rev 2012
584
37

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
37

Validation of the wild-type influenza A human challenge model H1N1pdMIST: an A(H1N1)pdm09 dose-finding investigational new drug study.
Matthew J Memoli, Lindsay Czajkowski, Susan Reed, Rani Athota, Tyler Bristol, Kathleen Proudfoot, Sarah Fargis, Matthew Stein, Rebecca L Dunfee, Pamela A Shaw,[...]. Clin Infect Dis 2015
97
25

Influenza virus evolution, host adaptation, and pandemic formation.
Jeffery K Taubenberger, John C Kash. Cell Host Microbe 2010
447
25

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance.
Elodie Ghedin, Jennifer Laplante, Jay DePasse, David E Wentworth, Roberto P Santos, Martha L Lepow, Joanne Porter, Kathleen Stellrecht, Xudong Lin, Darwin Operario,[...]. J Infect Dis 2011
84
25

Stochastic processes constrain the within and between host evolution of influenza virus.
John T McCrone, Robert J Woods, Emily T Martin, Ryan E Malosh, Arnold S Monto, Adam S Lauring. Elife 2018
86
25

Evaluation of Antihemagglutinin and Antineuraminidase Antibodies as Correlates of Protection in an Influenza A/H1N1 Virus Healthy Human Challenge Model.
Matthew J Memoli, Pamela A Shaw, Alison Han, Lindsay Czajkowski, Susan Reed, Rani Athota, Tyler Bristol, Sarah Fargis, Kyle Risos, John H Powers,[...]. mBio 2016
189
25

Two Outbreak Sources of Influenza A (H7N9) Viruses Have Been Established in China.
Dayan Wang, Lei Yang, Wenfei Zhu, Ye Zhang, Shumei Zou, Hong Bo, Rongbao Gao, Jie Dong, Weijuan Huang, Junfeng Guo,[...]. J Virol 2016
81
25

Seasonal Genetic Drift of Human Influenza A Virus Quasispecies Revealed by Deep Sequencing.
Cyril Barbezange, Louis Jones, Hervé Blanc, Ofer Isakov, Gershon Celniker, Vincent Enouf, Noam Shomron, Marco Vignuzzi, Sylvie van der Werf. Front Microbiol 2018
18
25

Next generation sequencing for whole genome analysis and surveillance of influenza A viruses.
Jana McGinnis, Jennifer Laplante, Matthew Shudt, Kirsten St George. J Clin Virol 2016
39
25

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs.
Pablo R Murcia, Joseph Hughes, Patrizia Battista, Lucy Lloyd, Gregory J Baillie, Ricardo H Ramirez-Gonzalez, Doug Ormond, Karen Oliver, Debra Elton, Jennifer A Mumford,[...]. PLoS Pathog 2012
61
25

The feasibility of using high resolution genome sequencing of influenza A viruses to detect mixed infections and quasispecies.
Muthannan A Ramakrishnan, Zheng Jin Tu, Sushmita Singh, Ashok K Chockalingam, Marie R Gramer, Ping Wang, Sagar M Goyal, My Yang, David A Halvorson, Srinand Sreevatsan. PLoS One 2009
51
25

Vaccination has minimal impact on the intrahost diversity of H3N2 influenza viruses.
Kari Debbink, John T McCrone, Joshua G Petrie, Rachel Truscon, Emileigh Johnson, Emily K Mantlo, Arnold S Monto, Adam S Lauring. PLoS Pathog 2017
47
25

Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses.
Bin Zhou, Matthew E Donnelly, Derek T Scholes, Kirsten St George, Masato Hatta, Yoshihiro Kawaoka, David E Wentworth. J Virol 2009
335
25

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification.
Ashley Sobel Leonard, Micah T McClain, Gavin J D Smith, David E Wentworth, Rebecca A Halpin, Xudong Lin, Amy Ransier, Timothy B Stockwell, Suman R Das, Anthony S Gilbert,[...]. J Virol 2016
61
25


Intra- and interhost evolutionary dynamics of equine influenza virus.
Pablo R Murcia, Gregory J Baillie, Janet Daly, Debra Elton, Carley Jervis, Jennifer A Mumford, Richard Newton, Colin R Parrish, Karin Hoelzer, Gordon Dougan,[...]. J Virol 2010
77
25

Association between adverse clinical outcome in human disease caused by novel influenza A H7N9 virus and sustained viral shedding and emergence of antiviral resistance.
Yunwen Hu, Shuihua Lu, Zhigang Song, Wei Wang, Pei Hao, Jianhua Li, Xiaonan Zhang, Hui-Ling Yen, Bisheng Shi, Tao Li,[...]. Lancet 2013
248
25

Quasispecies theory and the behavior of RNA viruses.
Adam S Lauring, Raul Andino. PLoS Pathog 2010
481
25

Characterization of quasispecies of pandemic 2009 influenza A virus (A/H1N1/2009) by de novo sequencing using a next-generation DNA sequencer.
Makoto Kuroda, Harutaka Katano, Noriko Nakajima, Minoru Tobiume, Akira Ainai, Tsuyoshi Sekizuka, Hideki Hasegawa, Masato Tashiro, Yuko Sasaki, Yoshichika Arakawa,[...]. PLoS One 2010
79
25

Human infection with a novel avian-origin influenza A (H7N9) virus.
Rongbao Gao, Bin Cao, Yunwen Hu, Zijian Feng, Dayan Wang, Wanfu Hu, Jian Chen, Zhijun Jie, Haibo Qiu, Ke Xu,[...]. N Engl J Med 2013
25

Deep sequencing of 2009 influenza A/H1N1 virus isolated from volunteer human challenge study participants and natural infections.
Yongli Xiao, Jae-Keun Park, Stephanie Williams, Mitchell Ramuta, Adriana Cervantes-Medina, Tyler Bristol, Sarah Smith, Lindsay Czajkowski, Alison Han, John C Kash,[...]. Virology 2019
4
50


Impact of host cell line adaptation on quasispecies composition and glycosylation of influenza A virus hemagglutinin.
Jana Verena Roedig, Erdmann Rapp, Dirk Höper, Yvonne Genzel, Udo Reichl. PLoS One 2011
32
12

A structural explanation for the low effectiveness of the seasonal influenza H3N2 vaccine.
Nicholas C Wu, Seth J Zost, Andrew J Thompson, David Oyen, Corwin M Nycholat, Ryan McBride, James C Paulson, Scott E Hensley, Ian A Wilson. PLoS Pathog 2017
133
12

ECHO: a reference-free short-read error correction algorithm.
Wei-Chun Kao, Andrew H Chan, Yun S Song. Genome Res 2011
53
12

Sequence-specific error profile of Illumina sequencers.
Kensuke Nakamura, Taku Oshima, Takuya Morimoto, Shun Ikeda, Hirofumi Yoshikawa, Yuh Shiwa, Shu Ishikawa, Margaret C Linak, Aki Hirai, Hiroki Takahashi,[...]. Nucleic Acids Res 2011
369
12

Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics.
Bin Zhou, Xudong Lin, Wei Wang, Rebecca A Halpin, Jayati Bera, Timothy B Stockwell, Ian G Barr, David E Wentworth. J Clin Microbiol 2014
60
12

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis.
Gareth M Jenkins, Andrew Rambaut, Oliver G Pybus, Edward C Holmes. J Mol Evol 2002
466
12

Update: Influenza Activity in the United States During the 2017-18 Season and Composition of the 2018-19 Influenza Vaccine.
Rebecca Garten, Lenee Blanton, Anwar Isa Abd Elal, Noreen Alabi, John Barnes, Matthew Biggerstaff, Lynnette Brammer, Alicia P Budd, Erin Burns, Charisse N Cummings,[...]. MMWR Morb Mortal Wkly Rep 2018
130
12


The 2009 H1N1 pandemic influenza virus: what next?
David M Morens, Jeffery K Taubenberger, Anthony S Fauci. mBio 2010
34
12

Morning vaccination enhances antibody response over afternoon vaccination: A cluster-randomised trial.
Joanna E Long, Mark T Drayson, Angela E Taylor, Kai M Toellner, Janet M Lord, Anna C Phillips. Vaccine 2016
108
12

Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains.
Olivo Miotto, A T Heiny, Randy Albrecht, Adolfo García-Sastre, Tin Wee Tan, J Thomas August, Vladimir Brusic. PLoS One 2010
58
12


Rapid selection of oseltamivir- and peramivir-resistant pandemic H1N1 virus during therapy in 2 immunocompromised hosts.
Matthew J Memoli, Rachel J Hrabal, Arash Hassantoufighi, Maryna C Eichelberger, Jeffery K Taubenberger. Clin Infect Dis 2010
114
12

Coupling sensitive in vitro and in silico techniques to assess cross-reactive CD4(+) T cells against the swine-origin H1N1 influenza virus.
Brian C Schanen, Anne S De Groot, L Moise, Matt Ardito, Elizabeth McClaine, William Martin, Vaughan Wittman, William L Warren, Donald R Drake. Vaccine 2011
45
12


Impact of age and pre-existing influenza immune responses in humans receiving split inactivated influenza vaccine on the induction of the breadth of antibodies to influenza A strains.
Ivette A Nuñez, Michael A Carlock, James D Allen, Simon O Owino, Krissy K Moehling, Patricia Nowalk, Michael Susick, Kensington Diagle, Kristen Sweeney, Sophia Mundle,[...]. PLoS One 2017
39
12


Antigenic Drift of the Influenza A(H1N1)pdm09 Virus Neuraminidase Results in Reduced Effectiveness of A/California/7/2009 (H1N1pdm09)-Specific Antibodies.
Jin Gao, Laura Couzens, David F Burke, Hongquan Wan, Patrick Wilson, Matthew J Memoli, Xiyan Xu, Ruth Harvey, Jens Wrammert, Rafi Ahmed,[...]. mBio 2019
26
12

Glycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza viruses.
Rafael A Medina, Silke Stertz, Balaji Manicassamy, Petra Zimmermann, Xiangjie Sun, Randy A Albrecht, Hanni Uusi-Kerttula, Osvaldo Zagordi, Robert B Belshe, Sharon E Frey,[...]. Sci Transl Med 2013
82
12

Deep Sequencing Reveals Potential Antigenic Variants at Low Frequencies in Influenza A Virus-Infected Humans.
Jorge M Dinis, Kelsey R Florek, Omolayo O Fatola, Louise H Moncla, James P Mutschler, Olivia K Charlier, Jennifer K Meece, Edward A Belongia, Thomas C Friedrich. J Virol 2016
63
12

Genomic polymorphism of the pandemic A (H1N1) influenza viruses correlates with viral replication, virulence, and pathogenicity in vitro and in vivo.
Lili Xu, Linlin Bao, Jianfang Zhou, Dayan Wang, Wei Deng, Qi Lv, Yila Ma, Fengdi Li, Huihui Sun, Lingjun Zhan,[...]. PLoS One 2011
27
12


In vivo and in vitro alterations in influenza A/H3N2 virus M2 and hemagglutinin genes: effect of passage in MDCK-SIAT1 cells and conventional MDCK cells.
Danjuan Li, Reiko Saito, Yasushi Suzuki, Isamu Sato, Hassan Zaraket, Clyde Dapat, Isolde Ma Caperig-Dapat, Hiroshi Suzuki. J Clin Microbiol 2009
13
12

Comparison of mutation patterns in full-genome A/H3N2 influenza sequences obtained directly from clinical samples and the same samples after a single MDCK passage.
Hong Kai Lee, Julian Wei-Tze Tang, Debra Han-Lin Kong, Tze Ping Loh, Donald Kok-Leong Chiang, Tommy Tsan-Yuk Lam, Evelyn Siew-Chuan Koay. PLoS One 2013
40
12

The Future of Flu: A Review of the Human Challenge Model and Systems Biology for Advancement of Influenza Vaccinology.
Amy Caryn Sherman, Aneesh Mehta, Neal W Dickert, Evan J Anderson, Nadine Rouphael. Front Cell Infect Microbiol 2019
32
12

A pan-H1 anti-hemagglutinin monoclonal antibody with potent broad-spectrum efficacy in vivo.
Gene S Tan, Florian Krammer, Dirk Eggink, Alita Kongchanagul, Thomas M Moran, Peter Palese. J Virol 2012
122
12

A Pyrosequencing-Based Approach to High-Throughput Identification of Influenza A(H3N2) Virus Clades Harboring Antigenic Drift Variants.
Vasiliy P Mishin, Tatiana Baranovich, Rebecca Garten, Anton Chesnokov, Anwar I Abd Elal, Michelle Adamczyk, Jennifer LaPlante, Kirsten St George, Alicia M Fry, John Barnes,[...]. J Clin Microbiol 2016
7
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.