A citation-based method for searching scientific literature

Barbara Herdy, Clemens Mayer, Dhaval Varshney, Giovanni Marsico, Pierre Murat, Chris Taylor, Clive D'Santos, David Tannahill, Shankar Balasubramanian. Nucleic Acids Res 2018
Times Cited: 64







List of co-cited articles
800 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Chun Kit Kwok, Giovanni Marsico, Aleksandr B Sahakyan, Vicki S Chambers, Shankar Balasubramanian. Nat Methods 2016
192
40

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
358
31


RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.
Marta M Fay, Shawn M Lyons, Pavel Ivanov. J Mol Biol 2017
192
28

RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer.
Andrew L Wolfe, Kamini Singh, Yi Zhong, Philipp Drewe, Vinagolu K Rajasekhar, Viraj R Sanghvi, Konstantinos J Mavrakis, Man Jiang, Justine E Roderick, Joni Van der Meulen,[...]. Nature 2014
354
26

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
588
25

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
522
25

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
240
25

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
23

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
390
21

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36.
Michael C Chen, Ramreddy Tippana, Natalia A Demeshkina, Pierre Murat, Shankar Balasubramanian, Sua Myong, Adrian R Ferré-D'Amaré. Nature 2018
120
21

RNA G-quadruplexes: emerging mechanisms in disease.
Anne Cammas, Stefania Millevoi. Nucleic Acids Res 2017
114
21

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells.
Sunny Y Yang, Pauline Lejault, Sandy Chevrier, Romain Boidot, A Gordon Robertson, Judy M Y Wong, David Monchaud. Nat Commun 2018
99
21

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
20

Human DDX21 binds and unwinds RNA guanine quadruplexes.
Ewan K S McRae, Evan P Booy, Aniel Moya-Torres, Peyman Ezzati, Jörg Stetefeld, Sean A McKenna. Nucleic Acids Res 2017
52
25

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
749
18

Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.
Chun Kit Kwok, Giovanni Marsico, Shankar Balasubramanian. Cold Spring Harb Perspect Biol 2018
52
23

G-quadruplexes and helicases.
Oscar Mendoza, Anne Bourdoncle, Jean-Baptiste Boulé, Robert M Brosh, Jean-Louis Mergny. Nucleic Acids Res 2016
234
18

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.
Pierre Murat, Giovanni Marsico, Barbara Herdy, Avazeh T Ghanbarian, Guillem Portella, Shankar Balasubramanian. Genome Biol 2018
61
19

DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions.
Markus Sauer, Stefan A Juranek, James Marks, Alessio De Magis, Hinke G Kazemier, Daniel Hilbig, Daniel Benhalevy, Xiantao Wang, Markus Hafner, Katrin Paeschke. Nat Commun 2019
56
21

G-quadruplexes: the beginning and end of UTRs.
Julian Leon Huppert, Anthony Bugaut, Sunita Kumari, Shankar Balasubramanian. Nucleic Acids Res 2008
286
17

RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation.
Etienne Dardenne, Micaela Polay Espinoza, Laurent Fattet, Sophie Germann, Marie-Pierre Lambert, Helen Neil, Eleonora Zonta, Hussein Mortada, Lise Gratadou, Mathieu Deygas,[...]. Cell Rep 2014
106
15

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
15

The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation.
Daniel Benhalevy, Sanjay K Gupta, Charles H Danan, Suman Ghosal, Hong-Wei Sun, Hinke G Kazemier, Katrin Paeschke, Markus Hafner, Stefan A Juranek. Cell Rep 2017
62
16

RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.
Claudia Ribeiro de Almeida, Somdutta Dhir, Ashish Dhir, Amin E Moghaddam, Quentin Sattentau, Anton Meinhart, Nicholas J Proudfoot. Mol Cell 2018
78
15

Comprehensive identification of proteins binding to RNA G-quadruplex motifs in the 5' UTR of tumor-associated mRNAs.
Tatsuo Serikawa, Christos Spanos, Annekathrin von Hacht, Nediljko Budisa, Juri Rappsilber, Jens Kurreck. Biochimie 2018
22
45

RNA G-quadruplex secondary structure promotes alternative splicing via the RNA-binding protein hnRNPF.
Huilin Huang, Jing Zhang, Samuel E Harvey, Xiaohui Hu, Chonghui Cheng. Genes Dev 2017
82
15

hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma.
Pauline Herviou, Morgane Le Bras, Leïla Dumas, Corinne Hieblot, Julia Gilhodes, Gianluca Cioci, Jean-Philippe Hugnot, Alfred Ameadan, François Guillonneau, Erik Dassi,[...]. Nat Commun 2020
22
45

Tracking the Dynamic Folding and Unfolding of RNA G-Quadruplexes in Live Cells.
Xiu-Cai Chen, Shuo-Bin Chen, Jing Dai, Jia-Hao Yuan, Tian-Miao Ou, Zhi-Shu Huang, Jia-Heng Tan. Angew Chem Int Ed Engl 2018
67
15

From unwinding to clamping - the DEAD box RNA helicase family.
Patrick Linder, Eckhard Jankowsky. Nat Rev Mol Cell Biol 2011
613
14

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
847
14

5'-UTR RNA G-quadruplexes: translation regulation and targeting.
Anthony Bugaut, Shankar Balasubramanian. Nucleic Acids Res 2012
411
14

Identification and characterization of RNA guanine-quadruplex binding proteins.
Annekathrin von Hacht, Oliver Seifert, Marcus Menger, Tatjana Schütze, Amit Arora, Zoltán Konthur, Peter Neubauer, Anke Wagner, Christoph Weise, Jens Kurreck. Nucleic Acids Res 2014
71
14

RNA G-quadruplex is resolved by repetitive and ATP-dependent mechanism of DHX36.
Ramreddy Tippana, Michael C Chen, Natalia A Demeshkina, Adrian R Ferré-D'Amaré, Sua Myong. Nat Commun 2019
32
28

Identification of G-Quadruplex-Binding Protein from the Exploration of RGG Motif/G-Quadruplex Interactions.
Zhou-Li Huang, Jing Dai, Wen-Hua Luo, Xiang-Gui Wang, Jia-Heng Tan, Shuo-Bin Chen, Zhi-Shu Huang. J Am Chem Soc 2018
31
25

DNA secondary structures: stability and function of G-quadruplex structures.
Matthew L Bochman, Katrin Paeschke, Virginia A Zakian. Nat Rev Genet 2012
786
12

3' UTR G-quadruplexes regulate miRNA binding.
Samuel Rouleau, Jean-Pierre Sehi Glouzon, Andrea Brumwell, Martin Bisaillon, Jean-Pierre Perreault. RNA 2017
57
14

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Oleg Kikin, Lawrence D'Antonio, Paramjeet S Bagga. Nucleic Acids Res 2006
502
12

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.
Aaron R Haeusler, Christopher J Donnelly, Goran Periz, Eric A J Simko, Patrick G Shaw, Min-Sik Kim, Nicholas J Maragakis, Juan C Troncoso, Akhilesh Pandey, Rita Sattler,[...]. Nature 2014
580
12



Aven recognition of RNA G-quadruplexes regulates translation of the mixed lineage leukemia protooncogenes.
Palaniraja Thandapani, Jingwen Song, Valentina Gandin, Yutian Cai, Samuel G Rouleau, Jean-Michel Garant, Francois-Michel Boisvert, Zhenbao Yu, Jean-Pierre Perreault, Ivan Topisirovic,[...]. Elife 2015
60
13

Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria.
Zbigniew Pietras, Magdalena A Wojcik, Lukasz S Borowski, Maciej Szewczyk, Tomasz M Kulinski, Dominik Cysewski, Piotr P Stepien, Andrzej Dziembowski, Roman J Szczesny. Nat Commun 2018
44
18

G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation.
Pierre Murat, Jie Zhong, Lea Lekieffre, Nathan P Cowieson, Jennifer L Clancy, Thomas Preiss, Shankar Balasubramanian, Rajiv Khanna, Judy Tellam. Nat Chem Biol 2014
155
10

A comparison of DNA and RNA quadruplex structures and stabilities.
Astrid Joachimi, Armin Benz, Jörg S Hartig. Bioorg Med Chem 2009
133
10

Nucleolin directly mediates Epstein-Barr virus immune evasion through binding to G-quadruplexes of EBNA1 mRNA.
María José Lista, Rodrigo Prado Martins, Olivier Billant, Marie-Astrid Contesse, Sarah Findakly, Pierre Pochard, Chrysoula Daskalogianni, Claire Beauvineau, Corinne Guetta, Christophe Jamin,[...]. Nat Commun 2017
54
12

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
288
10

DEAD-box protein DDX3 associates with eIF4F to promote translation of selected mRNAs.
Ricardo Soto-Rifo, Paulina S Rubilar, Taran Limousin, Sylvain de Breyne, Didier Décimo, Théophile Ohlmann. EMBO J 2012
170
10

Post-transcriptional Regulation of Nkx2-5 by RHAU in Heart Development.
Junwei Nie, Mingyang Jiang, Xiaotian Zhang, Hao Tang, Hengwei Jin, Xinyi Huang, Baiyin Yuan, Chenxi Zhang, Janice Ching Lai, Yoshikuni Nagamine,[...]. Cell Rep 2015
38
18

The RNA helicase RHAU (DHX36) unwinds a G4-quadruplex in human telomerase RNA and promotes the formation of the P1 helix template boundary.
E P Booy, M Meier, N Okun, S K Novakowski, S Xiong, J Stetefeld, S A McKenna. Nucleic Acids Res 2012
92
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.