A citation-based method for searching scientific literature

Kazumasa Oda, Johannes Vierock, Satomi Oishi, Silvia Rodriguez-Rozada, Reiya Taniguchi, Keitaro Yamashita, J Simon Wiegert, Tomohiro Nishizawa, Peter Hegemann, Osamu Nureki. Nat Commun 2018
Times Cited: 41







List of co-cited articles
435 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the channelrhodopsin light-gated cation channel.
Hideaki E Kato, Feng Zhang, Ofer Yizhar, Charu Ramakrishnan, Tomohiro Nishizawa, Kunio Hirata, Jumpei Ito, Yusuke Aita, Tomoya Tsukazaki, Shigehiko Hayashi,[...]. Nature 2012
305
46

Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.
Georg Nagel, Tanjef Szellas, Wolfram Huhn, Suneel Kateriya, Nona Adeishvili, Peter Berthold, Doris Ollig, Peter Hegemann, Ernst Bamberg. Proc Natl Acad Sci U S A 2003
46

NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics.
Elena G Govorunova, Oleg A Sineshchekov, Roger Janz, Xiaoqin Liu, John L Spudich. Science 2015
278
43

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
892
41

Structural insights into ion conduction by channelrhodopsin 2.
Oleksandr Volkov, Kirill Kovalev, Vitaly Polovinkin, Valentin Borshchevskiy, Christian Bamann, Roman Astashkin, Egor Marin, Alexander Popov, Taras Balandin, Dieter Willbold,[...]. Science 2017
71
39

Crystal structure of the natural anion-conducting channelrhodopsin GtACR1.
Yoon Seok Kim, Hideaki E Kato, Keitaro Yamashita, Shota Ito, Keiichi Inoue, Charu Ramakrishnan, Lief E Fenno, Kathryn E Evans, Joseph M Paggi, Ron O Dror,[...]. Nature 2018
38
34

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
31

Channelrhodopsin-1: a light-gated proton channel in green algae.
Georg Nagel, Doris Ollig, Markus Fuhrmann, Suneel Kateriya, Anna Maria Musti, Ernst Bamberg, Peter Hegemann. Science 2002
603
31

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.
John Y Lin, Per Magne Knutsen, Arnaud Muller, David Kleinfeld, Roger Y Tsien. Nat Neurosci 2013
414
31

Conversion of channelrhodopsin into a light-gated chloride channel.
Jonas Wietek, J Simon Wiegert, Nona Adeishvili, Franziska Schneider, Hiroshi Watanabe, Satoshi P Tsunoda, Arend Vogt, Marcus Elstner, Thomas G Oertner, Peter Hegemann. Science 2014
202
24

Biophysics of Channelrhodopsin.
Franziska Schneider, Christiane Grimm, Peter Hegemann. Annu Rev Biophys 2015
99
21

A light-driven sodium ion pump in marine bacteria.
Keiichi Inoue, Hikaru Ono, Rei Abe-Yoshizumi, Susumu Yoshizawa, Hiroyasu Ito, Kazuhiro Kogure, Hideki Kandori. Nat Commun 2013
211
21

Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.
Oliver P Ernst, David T Lodowski, Marcus Elstner, Peter Hegemann, Leonid S Brown, Hideki Kandori. Chem Rev 2014
523
21

Structure-guided transformation of channelrhodopsin into a light-activated chloride channel.
Andre Berndt, Soo Yeun Lee, Charu Ramakrishnan, Karl Deisseroth. Science 2014
218
19

The microbial opsin family of optogenetic tools.
Feng Zhang, Johannes Vierock, Ofer Yizhar, Lief E Fenno, Satoshi Tsunoda, Arash Kianianmomeni, Matthias Prigge, Andre Berndt, John Cushman, Jürgen Polle,[...]. Cell 2011
304
19

High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics.
Thomas Mager, David Lopez de la Morena, Verena Senn, Johannes Schlotte, Anna D Errico, Katrin Feldbauer, Christian Wrobel, Sangyong Jung, Kai Bodensiek, Vladan Rankovic,[...]. Nat Commun 2018
46
19

Neocortical excitation/inhibition balance in information processing and social dysfunction.
Ofer Yizhar, Lief E Fenno, Matthias Prigge, Franziska Schneider, Thomas J Davidson, Daniel J O'Shea, Vikaas S Sohal, Inbal Goshen, Joel Finkelstein, Jeanne T Paz,[...]. Nature 2011
19

Ultrafast optogenetic control.
Lisa A Gunaydin, Ofer Yizhar, André Berndt, Vikaas S Sohal, Karl Deisseroth, Peter Hegemann. Nat Neurosci 2010
424
19

Anion-conducting channelrhodopsins with tuned spectra and modified kinetics engineered for optogenetic manipulation of behavior.
Jonas Wietek, Silvia Rodriguez-Rozada, Janine Tutas, Federico Tenedini, Christiane Grimm, Thomas G Oertner, Peter Soba, Peter Hegemann, J Simon Wiegert. Sci Rep 2017
24
29

Multimodal fast optical interrogation of neural circuitry.
Feng Zhang, Li-Ping Wang, Martin Brauner, Jana F Liewald, Kenneth Kay, Natalie Watzke, Phillip G Wood, Ernst Bamberg, Georg Nagel, Alexander Gottschalk,[...]. Nature 2007
17

Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.
Andre Berndt, Soo Yeun Lee, Jonas Wietek, Charu Ramakrishnan, Elizabeth E Steinberg, Asim J Rashid, Hoseok Kim, Sungmo Park, Adam Santoro, Paul W Frankland,[...]. Proc Natl Acad Sci U S A 2016
108
17

A photochromic histidine kinase rhodopsin (HKR1) that is bimodally switched by ultraviolet and blue light.
Meike Luck, Tilo Mathes, Sara Bruun, Roman Fudim, Rolf Hagedorn, Tra My Tran Nguyen, Suneel Kateriya, John T M Kennis, Peter Hildebrandt, Peter Hegemann. J Biol Chem 2012
73
17

Bi-stable neural state switches.
André Berndt, Ofer Yizhar, Lisa A Gunaydin, Peter Hegemann, Karl Deisseroth. Nat Neurosci 2009
338
17

Diversification and spectral tuning in marine proteorhodopsins.
Dikla Man, Weiwu Wang, Gazalah Sabehi, L Aravind, Anton F Post, Ramon Massana, Elena N Spudich, John L Spudich, Oded Béjà. EMBO J 2003
200
17

A blue-shifted light-driven proton pump for neural silencing.
Yuki Sudo, Ayako Okazaki, Hikaru Ono, Jin Yagasaki, Seiya Sugo, Motoshi Kamiya, Louisa Reissig, Keiichi Inoue, Kunio Ihara, Hideki Kandori,[...]. J Biol Chem 2013
46
17

Red-shifting mutation of light-driven sodium-pump rhodopsin.
Keiichi Inoue, María Del Carmen Marín, Sahoko Tomida, Ryoko Nakamura, Yuta Nakajima, Massimo Olivucci, Hideki Kandori. Nat Commun 2019
24
29

Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii.
Oleg A Sineshchekov, Kwang-Hwan Jung, John L Spudich. Proc Natl Acad Sci U S A 2002
335
17

Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins.
Joanna Mattis, Kay M Tye, Emily A Ferenczi, Charu Ramakrishnan, Daniel J O'Shea, Rohit Prakash, Lisa A Gunaydin, Minsuk Hyun, Lief E Fenno, Viviana Gradinaru,[...]. Nat Methods 2011
426
14

Molecular and cellular approaches for diversifying and extending optogenetics.
Viviana Gradinaru, Feng Zhang, Charu Ramakrishnan, Joanna Mattis, Rohit Prakash, Ilka Diester, Inbal Goshen, Kimberly R Thompson, Karl Deisseroth. Cell 2010
588
14

Atomistic design of microbial opsin-based blue-shifted optogenetics tools.
Hideaki E Kato, Motoshi Kamiya, Seiya Sugo, Jumpei Ito, Reiya Taniguchi, Ayaka Orito, Kunio Hirata, Ayumu Inutsuka, Akihiro Yamanaka, Andrés D Maturana,[...]. Nat Commun 2015
46
14

Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri.
Feng Zhang, Matthias Prigge, Florent Beyrière, Satoshi P Tsunoda, Joanna Mattis, Ofer Yizhar, Peter Hegemann, Karl Deisseroth. Nat Neurosci 2008
321
14


Noninvasive optical inhibition with a red-shifted microbial rhodopsin.
Amy S Chuong, Mitra L Miri, Volker Busskamp, Gillian A C Matthews, Leah C Acker, Andreas T Sørensen, Andrew Young, Nathan C Klapoetke, Mike A Henninger, Suhasa B Kodandaramaiah,[...]. Nat Neurosci 2014
270
14

Monitoring light-induced structural changes of Channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy.
Eglof Ritter, Katja Stehfest, Andre Berndt, Peter Hegemann, Franz J Bartl. J Biol Chem 2008
122
14

Crystal structure of a natural light-gated anion channelrhodopsin.
Hai Li, Chia-Ying Huang, Elena G Govorunova, Christopher T Schafer, Oleg A Sineshchekov, Meitian Wang, Lei Zheng, John L Spudich. Elife 2019
15
40

Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, Roger Janz, John L Spudich. J Biol Chem 2013
48
14

The DC gate in Channelrhodopsin-2: crucial hydrogen bonding interaction between C128 and D156.
Melanie Nack, Ionela Radu, Michael Gossing, Christian Bamann, Ernst Bamberg, Gabriele Fischer von Mollard, Joachim Heberle. Photochem Photobiol Sci 2010
55
14

MerMAIDs: a family of metagenomically discovered marine anion-conducting and intensely desensitizing channelrhodopsins.
Johannes Oppermann, Paul Fischer, Arita Silapetere, Bernhard Liepe, Silvia Rodriguez-Rozada, José Flores-Uribe, Enrico Peter, Anke Keidel, Johannes Vierock, Joel Kaufmann,[...]. Nat Commun 2019
16
37

RubyACRs, nonalgal anion channelrhodopsins with highly red-shifted absorption.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, Yumei Wang, Leonid S Brown, John L Spudich. Proc Natl Acad Sci U S A 2020
15
40

Gating mechanisms of a natural anion channelrhodopsin.
Oleg A Sineshchekov, Elena G Govorunova, Hai Li, John L Spudich. Proc Natl Acad Sci U S A 2015
33
15

Optogenetic control of cardiac function.
Aristides B Arrenberg, Didier Y R Stainier, Herwig Baier, Jan Huisken. Science 2010
277
12

Optogenetic defibrillation terminates ventricular arrhythmia in mouse hearts and human simulations.
Tobias Bruegmann, Patrick M Boyle, Christoph C Vogt, Thomas V Karathanos, Hermenegild J Arevalo, Bernd K Fleischmann, Natalia A Trayanova, Philipp Sasse. J Clin Invest 2016
78
12

Two-Photon Bidirectional Control and Imaging of Neuronal Excitability with High Spatial Resolution In Vivo.
Angelo Forli, Dania Vecchia, Noemi Binini, Francesca Succol, Serena Bovetti, Claudio Moretti, Francesco Nespoli, Mathias Mahn, Christopher A Baker, McLean M Bolton,[...]. Cell Rep 2018
66
12

Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump.
Hideaki E Kato, Keiichi Inoue, Rei Abe-Yoshizumi, Yoshitaka Kato, Hikaru Ono, Masae Konno, Shoko Hososhima, Toru Ishizuka, Mohammad Razuanul Hoque, Hirofumi Kunitomo,[...]. Nature 2015
117
12

Optogenetic control of heart muscle in vitro and in vivo.
Tobias Bruegmann, Daniela Malan, Michael Hesse, Thomas Beiert, Christopher J Fuegemann, Bernd K Fleischmann, Philipp Sasse. Nat Methods 2010
256
12

Early formation of the ion-conducting pore in channelrhodopsin-2.
Jens Kuhne, Kirstin Eisenhauer, Eglof Ritter, Peter Hegemann, Klaus Gerwert, Franz Bartl. Angew Chem Int Ed Engl 2015
49
12

Molecular determinants of proton selectivity and gating in the red-light activated channelrhodopsin Chrimson.
Johannes Vierock, Christiane Grimm, Noam Nitzan, Peter Hegemann. Sci Rep 2017
13
38

Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich. Annu Rev Biochem 2017
120
12

The rhodopsin-guanylyl cyclase of the aquatic fungus Blastocladiella emersonii enables fast optical control of cGMP signaling.
Ulrike Scheib, Katja Stehfest, Christine E Gee, Heinz G Körschen, Roman Fudim, Thomas G Oertner, Peter Hegemann. Sci Signal 2015
48
12

A rhodopsin-guanylyl cyclase gene fusion functions in visual perception in a fungus.
Gabriela M Avelar, Robert I Schumacher, Paulo A Zaini, Guy Leonard, Thomas A Richards, Suely L Gomes. Curr Biol 2014
75
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.