A citation-based method for searching scientific literature

Aditya Chandru, Neil Bate, Geerten W Vuister, Shaun M Cowley. Sci Rep 2018
Times Cited: 17







List of co-cited articles
177 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
731
47

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
41

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
41

Sin3a-Tet1 interaction activates gene transcription and is required for embryonic stem cell pluripotency.
Fugui Zhu, Qianshu Zhu, Dan Ye, Qingquan Zhang, Yiwei Yang, Xudong Guo, Zhenping Liu, Zeyidan Jiapaer, Xiaoping Wan, Guiying Wang,[...]. Nucleic Acids Res 2018
27
35

Isoform Switch of TET1 Regulates DNA Demethylation and Mouse Development.
Wenhao Zhang, Weikun Xia, Qiujun Wang, Aaron J Towers, Jiayu Chen, Rui Gao, Yu Zhang, Chia-An Yen, Ah Young Lee, Yuanyuan Li,[...]. Mol Cell 2016
65
35

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.
William A Pastor, L Aravind, Anjana Rao. Nat Rev Mol Cell Biol 2013
579
35

HBP1 and Mad1 repressors bind the Sin3 corepressor PAH2 domain with opposite helical orientations.
Kurt A Swanson, Paul S Knoepfler, Kai Huang, Richard S Kang, Shaun M Cowley, Carol D Laherty, Robert N Eisenman, Ishwar Radhakrishnan. Nat Struct Mol Biol 2004
60
29

Structure of the 30-kDa Sin3-associated protein (SAP30) in complex with the mammalian Sin3A corepressor and its role in nucleic acid binding.
Tao Xie, Yuan He, Hanna Korkeamaki, Yongbo Zhang, Rebecca Imhoff, Olli Lohi, Ishwar Radhakrishnan. J Biol Chem 2011
21
29

Conserved themes in target recognition by the PAH1 and PAH2 domains of the Sin3 transcriptional corepressor.
Sarata C Sahu, Kurt A Swanson, Richard S Kang, Kai Huang, Kurt Brubaker, Kathleen Ratcliff, Ishwar Radhakrishnan. J Mol Biol 2008
40
29

The neural repressor NRSF/REST binds the PAH1 domain of the Sin3 corepressor by using its distinct short hydrophobic helix.
Mitsuru Nomura, Hiroko Uda-Tochio, Kiyohito Murai, Nozomu Mori, Yoshifumi Nishimura. J Mol Biol 2005
55
29

Tet proteins connect the O-linked N-acetylglucosamine transferase Ogt to chromatin in embryonic stem cells.
Pietro Vella, Andrea Scelfo, Sriganesh Jammula, Fulvio Chiacchiera, Kristine Williams, Alessandro Cuomo, Alessandra Roberto, Jesper Christensen, Tiziana Bonaldi, Kristian Helin,[...]. Mol Cell 2013
232
29

NANOG-dependent function of TET1 and TET2 in establishment of pluripotency.
Yael Costa, Junjun Ding, Thorold W Theunissen, Francesco Faiola, Timothy A Hore, Pavel V Shliaha, Miguel Fidalgo, Arven Saunders, Moyra Lawrence, Sabine Dietmann,[...]. Nature 2013
294
29

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.
Hao Wu, Ana C D'Alessio, Shinsuke Ito, Kai Xia, Zhibin Wang, Kairong Cui, Keji Zhao, Yi Eve Sun, Yi Zhang. Nature 2011
479
29

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.
Kian Peng Koh, Akiko Yabuuchi, Sridhar Rao, Yun Huang, Kerrianne Cunniff, Julie Nardone, Asta Laiho, Mamta Tahiliani, Cesar A Sommer, Gustavo Mostoslavsky,[...]. Cell Stem Cell 2011
555
29

Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development.
Meelad M Dawlaty, Kibibi Ganz, Benjamin E Powell, Yueh-Chiang Hu, Styliani Markoulaki, Albert W Cheng, Qing Gao, Jongpil Kim, Sang-Woon Choi, David C Page,[...]. Cell Stem Cell 2011
364
29

Solution structure of the interacting domains of the Mad-Sin3 complex: implications for recruitment of a chromatin-modifying complex.
K Brubaker, S M Cowley, K Huang, L Loo, G S Yochum, D E Ayer, R N Eisenman, I Radhakrishnan. Cell 2000
82
23



Histone deacetylases associated with the mSin3 corepressor mediate mad transcriptional repression.
C D Laherty, W M Yang, J M Sun, J R Davie, E Seto, R N Eisenman. Cell 1997
837
23

The Mad1-Sin3B interaction involves a novel helical fold.
C A Spronk, M Tessari, A M Kaan, J F Jansen, M Vermeulen, H G Stunnenberg, G W Vuister. Nat Struct Biol 2000
51
23

mSin3A corepressor regulates diverse transcriptional networks governing normal and neoplastic growth and survival.
Jan-Hermen Dannenberg, Gregory David, Sheng Zhong, Jaco van der Torre, Wing H Wong, Ronald A Depinho. Genes Dev 2005
171
23

Sin3: master scaffold and transcriptional corepressor.
Adrienne Grzenda, Gwen Lomberk, Jin-San Zhang, Raul Urrutia. Biochim Biophys Acta 2009
170
23

Sin3: a flexible regulator of global gene expression and genome stability.
Rebecca A Silverstein, Karl Ekwall. Curr Genet 2005
229
23

TET1 regulates hypoxia-induced epithelial-mesenchymal transition by acting as a co-activator.
Ya-Ping Tsai, Hsiao-Fan Chen, Sung-Yuan Chen, Wei-Chung Cheng, Hsei-Wei Wang, Zih-Jie Shen, Chunxiao Song, Shu-Chun Teng, Chuan He, Kou-Juey Wu. Genome Biol 2014
105
23

TET2 promotes histone O-GlcNAcylation during gene transcription.
Qiang Chen, Yibin Chen, Chunjing Bian, Ryoji Fujiki, Xiaochun Yu. Nature 2013
369
23

Rinf Regulates Pluripotency Network Genes and Tet Enzymes in Embryonic Stem Cells.
Mirunalini Ravichandran, Run Lei, Qin Tang, Yilin Zhao, Joun Lee, Liyang Ma, Stephanie Chrysanthou, Benjamin M Lorton, Ales Cvekl, David Shechter,[...]. Cell Rep 2019
14
28

Role of Tet1 in erasure of genomic imprinting.
Shinpei Yamaguchi, Li Shen, Yuting Liu, Damian Sendler, Yi Zhang. Nature 2013
153
23

Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells.
Yufei Xu, Feizhen Wu, Li Tan, Lingchun Kong, Lijun Xiong, Jie Deng, Andrew J Barbera, Lijuan Zheng, Haikuo Zhang, Stephen Huang,[...]. Mol Cell 2011
450
23


Phosphorylation of TET proteins is regulated via O-GlcNAcylation by the O-linked N-acetylglucosamine transferase (OGT).
Christina Bauer, Klaus Göbel, Nagarjuna Nagaraj, Christian Colantuoni, Mengxi Wang, Udo Müller, Elisabeth Kremmer, Andrea Rottach, Heinrich Leonhardt. J Biol Chem 2015
80
23

TET1 modulates H4K16 acetylation by controlling auto-acetylation of hMOF to affect gene regulation and DNA repair function.
Jianing Zhong, Xianfeng Li, Wanshi Cai, Yan Wang, Shanshan Dong, Jie Yang, Jian'an Zhang, Nana Wu, Yuanyuan Li, Fengbiao Mao,[...]. Nucleic Acids Res 2017
35
23

Functional analysis of the Mad1-mSin3A repressor-corepressor interaction reveals determinants of specificity, affinity, and transcriptional response.
Shaun M Cowley, Richard S Kang, John V Frangioni, Jason J Yada, Alec M DeGrand, Ishwar Radhakrishnan, Robert N Eisenman. Mol Cell Biol 2004
27
17

Sin3a is essential for the genome integrity and viability of pluripotent cells.
Patrick McDonel, Jeroen Demmers, David W M Tan, Fiona Watt, Brian D Hendrich. Dev Biol 2012
42
17

Structural insights into the assembly of the histone deacetylase-associated Sin3L/Rpd3L corepressor complex.
Michael D Clark, Ryan Marcum, Richard Graveline, Clarence W Chan, Tao Xie, Zhonglei Chen, Yujia Ding, Yongbo Zhang, Alfonso Mondragón, Gregory David,[...]. Proc Natl Acad Sci U S A 2015
25
17


The SIN3A/HDAC Corepressor Complex Functionally Cooperates with NANOG to Promote Pluripotency.
Arven Saunders, Xin Huang, Miguel Fidalgo, Michael H Reimer, Francesco Faiola, Junjun Ding, Carlos Sánchez-Priego, Diana Guallar, Carmen Sáenz, Dan Li,[...]. Cell Rep 2017
47
17

Fam60a defines a variant Sin3a-Hdac complex in embryonic stem cells required for self-renewal.
Gundula Streubel, Darren J Fitzpatrick, Giorgio Oliviero, Andrea Scelfo, Bruce Moran, Sudipto Das, Nayla Munawar, Ariane Watson, Kieran Wynne, Gian Luca Negri,[...]. EMBO J 2017
28
17

Extension of the binding motif of the Sin3 interacting domain of the Mad family proteins.
Hugo van Ingen, Edwin Lasonder, Jacobus F A Jansen, Anita M Kaan, Christian A E M Spronk, Henk G Stunnenberg, Geerten W Vuister. Biochemistry 2004
30
17


Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells.
Ozlem Yildirim, Ruowang Li, Jui-Hung Hung, Poshen B Chen, Xianjun Dong, Ly-Sha Ee, Zhiping Weng, Oliver J Rando, Thomas G Fazzio. Cell 2011
329
17


Tet2 is required to resolve inflammation by recruiting Hdac2 to specifically repress IL-6.
Qian Zhang, Kai Zhao, Qicong Shen, Yanmei Han, Yan Gu, Xia Li, Dezhi Zhao, Yiqi Liu, Chunmei Wang, Xiang Zhang,[...]. Nature 2015
443
17

Role of TET enzymes in DNA methylation, development, and cancer.
Kasper Dindler Rasmussen, Kristian Helin. Genes Dev 2016
530
17

Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming.
Xiao Hu, Lei Zhang, Shi-Qing Mao, Zheng Li, Jiekai Chen, Run-Rui Zhang, Hai-Ping Wu, Juan Gao, Fan Guo, Wei Liu,[...]. Cell Stem Cell 2014
213
17

Loss of Tet enzymes compromises proper differentiation of embryonic stem cells.
Meelad M Dawlaty, Achim Breiling, Thuc Le, M Inmaculada Barrasa, Günter Raddatz, Qing Gao, Benjamin E Powell, Albert W Cheng, Kym F Faull, Frank Lyko,[...]. Dev Cell 2014
214
17

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
17

Lin28A Binds Active Promoters and Recruits Tet1 to Regulate Gene Expression.
Yaxue Zeng, Bing Yao, Jaehoon Shin, Li Lin, Namshik Kim, Qifeng Song, Shuang Liu, Yijing Su, Junjie U Guo, Luoxiu Huang,[...]. Mol Cell 2016
57
17

5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.
Gary C Hon, Chun-Xiao Song, Tingting Du, Fulai Jin, Siddarth Selvaraj, Ah Young Lee, Chia-An Yen, Zhen Ye, Shi-Qing Mao, Bang-An Wang,[...]. Mol Cell 2014
224
17

Cooperative Action between SALL4A and TET Proteins in Stepwise Oxidation of 5-Methylcytosine.
Jun Xiong, Zhuqiang Zhang, Jiayu Chen, Hua Huang, Yali Xu, Xiaojun Ding, Yong Zheng, Ryuichi Nishinakamura, Guo-Liang Xu, Hailin Wang,[...]. Mol Cell 2016
76
17

OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development.
Joel Hrit, Leeanne Goodrich, Cheng Li, Bang-An Wang, Ji Nie, Xiaolong Cui, Elizabeth Allene Martin, Eric Simental, Jenna Fernandez, Monica Yun Liu,[...]. Elife 2018
30
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.