A citation-based method for searching scientific literature

Belén Moro, Uciel Chorostecki, Siwaret Arikit, Irina P Suarez, Claudia Höbartner, Rodolfo M Rasia, Blake C Meyers, Javier F Palatnik. Nucleic Acids Res 2018
Times Cited: 34







List of co-cited articles
352 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Multiple RNA recognition patterns during microRNA biogenesis in plants.
Nicolás G Bologna, Arnaldo L Schapire, Jixian Zhai, Uciel Chorostecki, Jerome Boisbouvier, Blake C Meyers, Javier F Palatnik. Genome Res 2013
74
47

A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.
Nicolás G Bologna, Julieta L Mateos, Edgardo G Bresso, Javier F Palatnik. EMBO J 2009
131
44

Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.
Julieta L Mateos, Nicolás G Bologna, Uciel Chorostecki, Javier F Palatnik. Curr Biol 2010
106
38

Biogenesis, turnover, and mode of action of plant microRNAs.
Kestrel Rogers, Xuemei Chen. Plant Cell 2013
526
38


Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway.
Nicolas G Bologna, Raphael Iselin, Luciano A Abriata, Alexis Sarazin, Nathan Pumplin, Florence Jay, Thomas Grentzinger, Matteo Dal Peraro, Olivier Voinnet. Mol Cell 2018
105
35

Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1.
Hongliang Zhu, Yuyi Zhou, Claudia Castillo-González, Amber Lu, Chunxiao Ge, Ying-Tao Zhao, Liusheng Duan, Zhaohu Li, Michael J Axtell, Xiu-Jie Wang,[...]. Nat Struct Mol Biol 2013
87
35

Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.
Yukio Kurihara, Yuichiro Watanabe. Proc Natl Acad Sci U S A 2004
637
32

The 'how' and 'where' of plant microRNAs.
Yu Yu, Tianran Jia, Xuemei Chen. New Phytol 2017
192
32

Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.
Shijun Mi, Tao Cai, Yugang Hu, Yemiao Chen, Emily Hodges, Fangrui Ni, Liang Wu, Shan Li, Huanyu Zhou, Chengzu Long,[...]. Cell 2008
879
32



SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production.
Zhiye Wang, Zeyang Ma, Claudia Castillo-González, Di Sun, Yanjun Li, Bin Yu, Baoyu Zhao, Pingwei Li, Xiuren Zhang. Nature 2018
68
29

Structure determinants for accurate processing of miR172a in Arabidopsis thaliana.
Schallum Werner, Heike Wollmann, Korbinian Schneeberger, Detlef Weigel. Curr Biol 2010
102
26

Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis.
Guodong Ren, Meng Xie, Yongchao Dou, Shuxin Zhang, Chi Zhang, Bin Yu. Proc Natl Acad Sci U S A 2012
119
26

Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome.
Charles Addo-Quaye, Jo Ann Snyder, Yong Bum Park, Yong-Fang Li, Ramanjulu Sunkar, Michael J Axtell. RNA 2009
123
26

RNA secondary structural determinants of miRNA precursor processing in Arabidopsis.
Liang Song, Michael J Axtell, Nina V Fedoroff. Curr Biol 2010
125
26

Evolution and functional diversification of MIRNA genes.
Josh T Cuperus, Noah Fahlgren, James C Carrington. Plant Cell 2011
459
26

SERRATE: a new player on the plant microRNA scene.
Dajana Lobbes, Ghanasyam Rallapalli, Dominik D Schmidt, Cathie Martin, Jonathan Clarke. EMBO Rep 2006
244
26

The Protein Phosphatase 4 and SMEK1 Complex Dephosphorylates HYL1 to Promote miRNA Biogenesis by Antagonizing the MAPK Cascade in Arabidopsis.
Chuanbin Su, Ziwei Li, Jinping Cheng, Lei Li, Songxiao Zhong, Li Liu, Yun Zheng, Binglian Zheng. Dev Cell 2017
46
26

The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.
Zhicheng Dong, Meng-Hsuan Han, Nina Fedoroff. Proc Natl Acad Sci U S A 2008
258
26

miRNA Biogenesis: A Dynamic Pathway.
Natalia P Achkar, Damián A Cambiagno, Pablo A Manavella. Trends Plant Sci 2016
140
26

MicroRNAs and Their Regulatory Roles in Plant-Environment Interactions.
Xianwei Song, Yan Li, Xiaofeng Cao, Yijun Qi. Annu Rev Plant Biol 2019
250
26

Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1.
Pablo A Manavella, Jörg Hagmann, Felix Ott, Sascha Laubinger, Mirita Franz, Boris Macek, Detlef Weigel. Cell 2012
148
23

MicroRNAs in plants.
Brenda J Reinhart, Earl G Weinstein, Matthew W Rhoades, Bonnie Bartel, David P Bartel. Genes Dev 2002
23

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
Sascha Laubinger, Timo Sachsenberg, Georg Zeller, Wolfgang Busch, Jan U Lohmann, Gunnar Rätsch, Detlef Weigel. Proc Natl Acad Sci U S A 2008
269
20

Expression of Arabidopsis MIRNA genes.
Zhixin Xie, Edwards Allen, Noah Fahlgren, Adam Calamar, Scott A Givan, James C Carrington. Plant Physiol 2005
426
20



A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation.
Natalia P Achkar, Seok Keun Cho, Christian Poulsen, Agustin L Arce, Delfina A Re, Axel J Giudicatti, Elizabeth Karayekov, Moon Young Ryu, Suk Won Choi, Jesper Harholt,[...]. Dev Cell 2018
32
21

The SnRK2 kinases modulate miRNA accumulation in Arabidopsis.
Jun Yan, Pengcheng Wang, Bangshing Wang, Chuan-Chih Hsu, Kai Tang, Hairong Zhang, Yueh-Ju Hou, Yang Zhao, Qiming Wang, Chunzhao Zhao,[...]. PLoS Genet 2017
52
20

The functions of plant small RNAs in development and in stress responses.
Shengjun Li, Claudia Castillo-González, Bin Yu, Xiuren Zhang. Plant J 2017
105
20

Methylation as a crucial step in plant microRNA biogenesis.
Bin Yu, Zhiyong Yang, Junjie Li, Svetlana Minakhina, Maocheng Yang, Richard W Padgett, Ruth Steward, Xuemei Chen. Science 2005
676
20

Nuclear processing and export of microRNAs in Arabidopsis.
Mee Yeon Park, Gang Wu, Alfredo Gonzalez-Sulser, Hervé Vaucheret, R Scott Poethig. Proc Natl Acad Sci U S A 2005
406
20

HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing.
Damian A Cambiagno, Axel J Giudicatti, Agustin L Arce, Delfina Gagliardi, Lei Li, Wei Yuan, Derek S Lundberg, Detlef Weigel, Pablo A Manavella. Mol Plant 2021
24
29

The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation.
Meng-Hsuan Han, Saiprasad Goud, Liang Song, Nina Fedoroff. Proc Natl Acad Sci U S A 2004
336
17


SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.
Li Yang, Ziqiang Liu, Feng Lu, Aiwu Dong, Hai Huang. Plant J 2006
264
17

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis.
Bin Yu, Liu Bi, Binglian Zheng, Lijuan Ji, David Chevalier, Manu Agarwal, Vanitharani Ramachandran, Wanxiang Li, Thierry Lagrange, John C Walker,[...]. Proc Natl Acad Sci U S A 2008
195
17

STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis.
Samir Ben Chaabane, Renyi Liu, Viswanathan Chinnusamy, Yerim Kwon, Joo-hyuk Park, Seo Yeon Kim, Jian-Kang Zhu, Seong Wook Yang, Byeong-ha Lee. Nucleic Acids Res 2013
70
17

The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing.
Tianran Jia, Bailong Zhang, Chenjiang You, Yong Zhang, Liping Zeng, Shengjun Li, Kaeli C M Johnson, Bin Yu, Xin Li, Xuemei Chen. Plant Cell 2017
42
17

COP1 E3 ligase protects HYL1 to retain microRNA biogenesis.
Seok Keun Cho, Samir Ben Chaabane, Pratik Shah, Christian Peter Poulsen, Seong Wook Yang. Nat Commun 2014
73
17

Arabidopsis ARGONAUTE 1 Binds Chromatin to Promote Gene Transcription in Response to Hormones and Stresses.
Chang Liu, Ying Xin, Le Xu, Zhaokui Cai, Yuanchao Xue, Yong Liu, Daoxin Xie, Yule Liu, Yijun Qi. Dev Cell 2018
80
17

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
17

The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis.
Suikang Wang, Li Quan, Shaofang Li, Chenjiang You, Yong Zhang, Lei Gao, Liping Zeng, Lin Liu, Yanhua Qi, Beixin Mo,[...]. Plant Cell 2019
29
20

Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.
Junjie Li, Zhiyong Yang, Bin Yu, Jun Liu, Xuemei Chen. Curr Biol 2005
505
17


Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body.
Liang Song, Meng-Hsuan Han, Joanna Lesicka, Nina Fedoroff. Proc Natl Acad Sci U S A 2007
179
17

Linking key steps of microRNA biogenesis by TREX-2 and the nuclear pore complex in Arabidopsis.
Bailong Zhang, Chenjiang You, Yong Zhang, Liping Zeng, Jun Hu, Minglei Zhao, Xuemei Chen. Nat Plants 2020
30
20

Plant microRNAs: Biogenesis, Homeostasis, and Degradation.
Junli Wang, Jun Mei, Guodong Ren. Front Plant Sci 2019
97
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.