Jakob Franke, Jeongwoon Kim, John P Hamilton, Dongyan Zhao, Gina M Pham, Krystle Wiegert-Rininger, Emily Crisovan, Linsey Newton, Brieanne Vaillancourt, Evangelos Tatsis, C Robin Buell, Sarah E O'Connor. Chembiochem 2019
Times Cited: 25
Times Cited: 25
Times Cited
Times Co-cited
Similarity
Genome-guided investigation of plant natural product biosynthesis.
Franziska Kellner, Jeongwoon Kim, Bernardo J Clavijo, John P Hamilton, Kevin L Childs, Brieanne Vaillancourt, Jason Cepela, Marc Habermann, Burkhard Steuernagel, Leah Clissold,[...]. Plant J 2015
Franziska Kellner, Jeongwoon Kim, Bernardo J Clavijo, John P Hamilton, Kevin L Childs, Brieanne Vaillancourt, Jason Cepela, Marc Habermann, Burkhard Steuernagel, Leah Clissold,[...]. Plant J 2015
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Missing enzymes in the biosynthesis of the anticancer drug vinblastine in Madagascar periwinkle.
Lorenzo Caputi, Jakob Franke, Scott C Farrow, Khoa Chung, Richard M E Payne, Trinh-Don Nguyen, Thu-Thuy T Dang, Inês Soares Teto Carqueijeiro, Konstantinos Koudounas, Thomas Dugé de Bernonville,[...]. Science 2018
Lorenzo Caputi, Jakob Franke, Scott C Farrow, Khoa Chung, Richard M E Payne, Trinh-Don Nguyen, Thu-Thuy T Dang, Inês Soares Teto Carqueijeiro, Konstantinos Koudounas, Thomas Dugé de Bernonville,[...]. Science 2018
28
Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anticancer and Antimalarial Cardenolides.
Genevieve M Hoopes, John P Hamilton, Jeongwoon Kim, Dongyan Zhao, Krystle Wiegert-Rininger, Emily Crisovan, C Robin Buell. G3 (Bethesda) 2018
Genevieve M Hoopes, John P Hamilton, Jeongwoon Kim, Dongyan Zhao, Krystle Wiegert-Rininger, Emily Crisovan, C Robin Buell. G3 (Bethesda) 2018
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The opium poppy genome and morphinan production.
Li Guo, Thilo Winzer, Xiaofei Yang, Yi Li, Zemin Ning, Zhesi He, Roxana Teodor, Ying Lu, Tim A Bowser, Ian A Graham,[...]. Science 2018
Li Guo, Thilo Winzer, Xiaofei Yang, Yi Li, Zemin Ning, Zhesi He, Roxana Teodor, Ying Lu, Tim A Bowser, Ian A Graham,[...]. Science 2018
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A BAHD acyltransferase catalyzing 19-O-acetylation of tabersonine derivatives in roots of Catharanthus roseus enables combinatorial synthesis of monoterpene indole alkaloids.
Inês Carqueijeiro, Thomas Dugé de Bernonville, Arnaud Lanoue, Thu-Thuy Dang, Christiana N Teijaro, Christian Paetz, Kevin Billet, Angela Mosquera, Audrey Oudin, Sébastien Besseau,[...]. Plant J 2018
Inês Carqueijeiro, Thomas Dugé de Bernonville, Arnaud Lanoue, Thu-Thuy Dang, Christiana N Teijaro, Christian Paetz, Kevin Billet, Angela Mosquera, Audrey Oudin, Sébastien Besseau,[...]. Plant J 2018
20
De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin.
Dongyan Zhao, John P Hamilton, Gina M Pham, Emily Crisovan, Krystle Wiegert-Rininger, Brieanne Vaillancourt, Dean DellaPenna, C Robin Buell. Gigascience 2017
Dongyan Zhao, John P Hamilton, Gina M Pham, Emily Crisovan, Krystle Wiegert-Rininger, Brieanne Vaillancourt, Dean DellaPenna, C Robin Buell. Gigascience 2017
20
Folivory elicits a strong defense reaction in Catharanthus roseus: metabolomic and transcriptomic analyses reveal distinct local and systemic responses.
Thomas Dugé de Bernonville, Inês Carqueijeiro, Arnaud Lanoue, Florent Lafontaine, Paloma Sánchez Bel, Franziska Liesecke, Karine Musset, Audrey Oudin, Gaëlle Glévarec, Olivier Pichon,[...]. Sci Rep 2017
Thomas Dugé de Bernonville, Inês Carqueijeiro, Arnaud Lanoue, Florent Lafontaine, Paloma Sánchez Bel, Franziska Liesecke, Karine Musset, Audrey Oudin, Gaëlle Glévarec, Olivier Pichon,[...]. Sci Rep 2017
20
The bHLH transcription factor BIS1 controls the iridoid branch of the monoterpenoid indole alkaloid pathway in Catharanthus roseus.
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20
The basic helix-loop-helix transcription factor BIS2 is essential for monoterpenoid indole alkaloid production in the medicinal plant Catharanthus roseus.
Alex Van Moerkercke, Priscille Steensma, Ivo Gariboldi, Javiera Espoz, Purin C Purnama, Fabian Schweizer, Karel Miettinen, Robin Vanden Bossche, Rebecca De Clercq, Johan Memelink,[...]. Plant J 2016
Alex Van Moerkercke, Priscille Steensma, Ivo Gariboldi, Javiera Espoz, Purin C Purnama, Fabian Schweizer, Karel Miettinen, Robin Vanden Bossche, Rebecca De Clercq, Johan Memelink,[...]. Plant J 2016
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Plant metabolic clusters - from genetics to genomics.
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
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A look inside an alkaloid multisite plant: the Catharanthus logistics.
Vincent Courdavault, Nicolas Papon, Marc Clastre, Nathalie Giglioli-Guivarc'h, Benoit St-Pierre, Vincent Burlat. Curr Opin Plant Biol 2014
Vincent Courdavault, Nicolas Papon, Marc Clastre, Nathalie Giglioli-Guivarc'h, Benoit St-Pierre, Vincent Burlat. Curr Opin Plant Biol 2014
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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.
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France Denoeud, Lorenzo Carretero-Paulet, Alexis Dereeper, Gaëtan Droc, Romain Guyot, Marco Pietrella, Chunfang Zheng, Adriana Alberti, François Anthony, Giuseppe Aprea,[...]. Science 2014
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Structural investigation of heteroyohimbine alkaloid synthesis reveals active site elements that control stereoselectivity.
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Anna Stavrinides, Evangelos C Tatsis, Lorenzo Caputi, Emilien Foureau, Clare E M Stevenson, David M Lawson, Vincent Courdavault, Sarah E O'Connor. Nat Commun 2016
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De novo production of the plant-derived alkaloid strictosidine in yeast.
Stephanie Brown, Marc Clastre, Vincent Courdavault, Sarah E O'Connor. Proc Natl Acad Sci U S A 2015
Stephanie Brown, Marc Clastre, Vincent Courdavault, Sarah E O'Connor. Proc Natl Acad Sci U S A 2015
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Completion of the canonical pathway for assembly of anticancer drugs vincristine/vinblastine in Catharanthus roseus.
Yang Qu, Olga Safonova, Vincenzo De Luca. Plant J 2019
Yang Qu, Olga Safonova, Vincenzo De Luca. Plant J 2019
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A pair of tabersonine 16-hydroxylases initiates the synthesis of vindoline in an organ-dependent manner in Catharanthus roseus.
Sébastien Besseau, Franziska Kellner, Arnaud Lanoue, Antje M K Thamm, Vonny Salim, Bernd Schneider, Fernando Geu-Flores, René Höfer, Grégory Guirimand, Anthony Guihur,[...]. Plant Physiol 2013
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plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
Satria A Kautsar, Hernando G Suarez Duran, Kai Blin, Anne Osbourn, Marnix H Medema. Nucleic Acids Res 2017
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An NPF transporter exports a central monoterpene indole alkaloid intermediate from the vacuole.
Richard M E Payne, Deyang Xu, Emilien Foureau, Marta Ines Soares Teto Carqueijeiro, Audrey Oudin, Thomas Dugé de Bernonville, Vlastimil Novak, Meike Burow, Carl-Erik Olsen, D Marc Jones,[...]. Nat Plants 2017
Richard M E Payne, Deyang Xu, Emilien Foureau, Marta Ines Soares Teto Carqueijeiro, Audrey Oudin, Thomas Dugé de Bernonville, Vlastimil Novak, Meike Burow, Carl-Erik Olsen, D Marc Jones,[...]. Nat Plants 2017
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A novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate- and elicitor-inducible AP2-domain transcription factor, ORCA2.
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The basic helix-loop-helix transcription factor CrMYC2 controls the jasmonate-responsive expression of the ORCA genes that regulate alkaloid biosynthesis in Catharanthus roseus.
Hongtao Zhang, Sabah Hedhili, Grégory Montiel, Yanxia Zhang, Guillaume Chatel, Martial Pré, Pascal Gantet, Johan Memelink. Plant J 2011
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ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism.
L van der Fits, J Memelink. Science 2000
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GATA and Phytochrome Interacting Factor Transcription Factors Regulate Light-Induced Vindoline Biosynthesis in Catharanthus roseus.
Yongliang Liu, Barunava Patra, Sitakanta Pattanaik, Ying Wang, Ling Yuan. Plant Physiol 2019
Yongliang Liu, Barunava Patra, Sitakanta Pattanaik, Ying Wang, Ling Yuan. Plant Physiol 2019
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A differentially regulated AP2/ERF transcription factor gene cluster acts downstream of a MAP kinase cascade to modulate terpenoid indole alkaloid biosynthesis in Catharanthus roseus.
Priyanka Paul, Sanjay K Singh, Barunava Patra, Xueyi Sui, Sitakanta Pattanaik, Ling Yuan. New Phytol 2017
Priyanka Paul, Sanjay K Singh, Barunava Patra, Xueyi Sui, Sitakanta Pattanaik, Ling Yuan. New Phytol 2017
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Zinc finger proteins act as transcriptional repressors of alkaloid biosynthesis genes in Catharanthus roseus.
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Homolog of tocopherol C methyltransferases catalyzes N methylation in anticancer alkaloid biosynthesis.
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Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume.
Keiichi Mochida, Tetsuya Sakurai, Hikaru Seki, Takuhiro Yoshida, Kotaro Takahagi, Satoru Sawai, Hiroshi Uchiyama, Toshiya Muranaka, Kazuki Saito. Plant J 2017
Keiichi Mochida, Tetsuya Sakurai, Hikaru Seki, Takuhiro Yoshida, Kotaro Takahagi, Satoru Sawai, Hiroshi Uchiyama, Toshiya Muranaka, Kazuki Saito. Plant J 2017
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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.
Joshua N Burton, Andrew Adey, Rupali P Patwardhan, Ruolan Qiu, Jacob O Kitzman, Jay Shendure. Nat Biotechnol 2013
Joshua N Burton, Andrew Adey, Rupali P Patwardhan, Ruolan Qiu, Jacob O Kitzman, Jay Shendure. Nat Biotechnol 2013
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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
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fastp: an ultra-fast all-in-one FASTQ preprocessor.
Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu. Bioinformatics 2018
Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu. Bioinformatics 2018
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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.
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Guillaume Marçais, Carl Kingsford. Bioinformatics 2011
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
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Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen White, C Robin Buell, Jennifer R Wortman. Genome Biol 2008
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BLAST+: architecture and applications.
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
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Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
Pascal Schläpfer, Peifen Zhang, Chuan Wang, Taehyong Kim, Michael Banf, Lee Chae, Kate Dreher, Arvind K Chavali, Ricardo Nilo-Poyanco, Thomas Bernard,[...]. Plant Physiol 2017
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The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis.
Qing Zhao, Jun Yang, Meng-Ying Cui, Jie Liu, Yumin Fang, Mengxiao Yan, Wenqing Qiu, Huiwen Shang, Zhicheng Xu, Reheman Yidiresi,[...]. Mol Plant 2019
Qing Zhao, Jun Yang, Meng-Ying Cui, Jie Liu, Yumin Fang, Mengxiao Yan, Wenqing Qiu, Huiwen Shang, Zhicheng Xu, Reheman Yidiresi,[...]. Mol Plant 2019
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Phytochemical genomics of the Madagascar periwinkle: Unravelling the last twists of the alkaloid engine.
Thomas Dugé de Bernonville, Marc Clastre, Sébastien Besseau, Audrey Oudin, Vincent Burlat, Gaëlle Glévarec, Arnaud Lanoue, Nicolas Papon, Nathalie Giglioli-Guivarc'h, Benoit St-Pierre,[...]. Phytochemistry 2015
Thomas Dugé de Bernonville, Marc Clastre, Sébastien Besseau, Audrey Oudin, Vincent Burlat, Gaëlle Glévarec, Arnaud Lanoue, Nicolas Papon, Nathalie Giglioli-Guivarc'h, Benoit St-Pierre,[...]. Phytochemistry 2015
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Gene and genome duplications in the evolution of chemodiversity: perspectives from studies of Lamiaceae.
Benjamin R Lichman, Grant T Godden, Carol Robin Buell. Curr Opin Plant Biol 2020
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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
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The seco-iridoid pathway from Catharanthus roseus.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
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Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
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Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis.
Amit Rai, Hideki Hirakawa, Ryo Nakabayashi, Shinji Kikuchi, Koki Hayashi, Megha Rai, Hiroshi Tsugawa, Taiki Nakaya, Tetsuya Mori, Hideki Nagasaki,[...]. Nat Commun 2021
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Robert van Der Heijden, Denise I Jacobs, Wim Snoeijer, Didier Hallard, Robert Verpoorte. Curr Med Chem 2004
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Complete biosynthesis of cannabinoids and their unnatural analogues in yeast.
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A translational synthetic biology platform for rapid access to gram-scale quantities of novel drug-like molecules.
James Reed, Michael J Stephenson, Karel Miettinen, Bastiaan Brouwer, Aymeric Leveau, Paul Brett, Rebecca J M Goss, Alain Goossens, Maria A O'Connell, Anne Osbourn. Metab Eng 2017
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Six enzymes from mayapple that complete the biosynthetic pathway to the etoposide aglycone.
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Completion of the seven-step pathway from tabersonine to the anticancer drug precursor vindoline and its assembly in yeast.
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12
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.