A citation-based method for searching scientific literature

Jingtao Guo, Edward J Grow, Hana Mlcochova, Geoffrey J Maher, Cecilia Lindskog, Xichen Nie, Yixuan Guo, Yodai Takei, Jina Yun, Long Cai, Robin Kim, Douglas T Carrell, Anne Goriely, James M Hotaling, Bradley R Cairns. Cell Res 2018
Times Cited: 208







List of co-cited articles
903 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids.
Brian P Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D Lehle, Max Mayo, Birgit Westernströer,[...]. Cell Rep 2018
189
31

Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis.
Mei Wang, Xixi Liu, Gang Chang, Yidong Chen, Geng An, Liying Yan, Shuai Gao, Yanwen Xu, Yueli Cui, Ji Dong,[...]. Cell Stem Cell 2018
151
29

The Neonatal and Adult Human Testis Defined at the Single-Cell Level.
Abhishek Sohni, Kun Tan, Hye-Won Song, Dana Burow, Dirk G de Rooij, Louise Laurent, Tung-Chin Hsieh, Raja Rabah, Saher Sue Hammoud, Elena Vicini,[...]. Cell Rep 2019
109
26

The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty.
Jingtao Guo, Xichen Nie, Maria Giebler, Hana Mlcochova, Yueqi Wang, Edward J Grow, Robin Kim, Melissa Tharmalingam, Gabriele Matilionyte, Cecilia Lindskog,[...]. Cell Stem Cell 2020
62
38

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq.
Christopher Daniel Green, Qianyi Ma, Gabriel L Manske, Adrienne Niederriter Shami, Xianing Zheng, Simone Marini, Lindsay Moritz, Caleb Sultan, Stephen J Gurczynski, Bethany B Moore,[...]. Dev Cell 2018
158
23

Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis.
Adrienne Niederriter Shami, Xianing Zheng, Sarah K Munyoki, Qianyi Ma, Gabriel L Manske, Christopher D Green, Meena Sukhwani, Kyle E Orwig, Jun Z Li, Saher Sue Hammoud. Dev Cell 2020
51
41

Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development.
Jingtao Guo, Edward J Grow, Chongil Yi, Hana Mlcochova, Geoffrey J Maher, Cecilia Lindskog, Patrick J Murphy, Candice L Wike, Douglas T Carrell, Anne Goriely,[...]. Cell Stem Cell 2017
119
19

Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis.
Yao Chen, Yuxuan Zheng, Yun Gao, Zhen Lin, Suming Yang, Tongtong Wang, Qiu Wang, Nannan Xie, Rong Hua, Mingxi Liu,[...]. Cell Res 2018
131
13

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
12

Proteomics. Tissue-based map of the human proteome.
Mathias Uhlén, Linn Fagerberg, Björn M Hallström, Cecilia Lindskog, Per Oksvold, Adil Mardinoglu, Åsa Sivertsson, Caroline Kampf, Evelina Sjöstedt, Anna Asplund,[...]. Science 2015
11

Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions.
Li Li, Ji Dong, Liying Yan, Jun Yong, Xixi Liu, Yuqiong Hu, Xiaoying Fan, Xinglong Wu, Hongshan Guo, Xiaoye Wang,[...]. Cell Stem Cell 2017
174
11

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis.
Christina Ernst, Nils Eling, Celia P Martinez-Jimenez, John C Marioni, Duncan T Odom. Nat Commun 2019
73
13

Unified single-cell analysis of testis gene regulation and pathology in five mouse strains.
Min Jung, Daniel Wells, Jannette Rusch, Suhaira Ahmad, Jonathan Marchini, Simon R Myers, Donald F Conrad. Elife 2019
45
22

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
10

Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.
Kathryn J Grive, Yang Hu, Eileen Shu, Andrew Grimson, Olivier Elemento, Jennifer K Grenier, Paula E Cohen. PLoS Genet 2019
43
23

Unraveling transcriptome dynamics in human spermatogenesis.
Sabrina Z Jan, Tinke L Vormer, Aldo Jongejan, Michael D Röling, Sherman J Silber, Dirk G de Rooij, Geert Hamer, Sjoerd Repping, Ans M M van Pelt. Development 2017
82
10

The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells.
Fan Guo, Liying Yan, Hongshan Guo, Lin Li, Boqiang Hu, Yangyu Zhao, Jun Yong, Yuqiong Hu, Xiaoye Wang, Yuan Wei,[...]. Cell 2015
306
9

Single-cell analysis of the developing human testis reveals somatic niche cell specification and fetal germline stem cell establishment.
Jingtao Guo, Enrique Sosa, Tsotne Chitiashvili, Xichen Nie, Ernesto Javier Rojas, Elizabeth Oliver, Kathrin Plath, James M Hotaling, Jan-Bernd Stukenborg, Amander T Clark,[...]. Cell Stem Cell 2021
25
36

Functional and molecular features of the Id4+ germline stem cell population in mouse testes.
Frieda Chan, Melissa J Oatley, Amy V Kaucher, Qi-En Yang, Charles J Bieberich, Cooduvalli S Shashikant, Jon M Oatley. Genes Dev 2014
139
8

Spermatogonial stem cells and spermatogenesis in mice, monkeys and men.
Adetunji P Fayomi, Kyle E Orwig. Stem Cell Res 2018
118
8


Long-term proliferation in culture and germline transmission of mouse male germline stem cells.
Mito Kanatsu-Shinohara, Narumi Ogonuki, Kimiko Inoue, Hiromi Miki, Atsuo Ogura, Shinya Toyokuni, Takashi Shinohara. Biol Reprod 2003
696
8

Spermatogenesis following male germ-cell transplantation.
R L Brinster, J W Zimmermann. Proc Natl Acad Sci U S A 1994
8

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
7

Genetics of male infertility.
Csilla Krausz, Antoni Riera-Escamilla. Nat Rev Urol 2018
234
7

Identification of dynamic undifferentiated cell states within the male germline.
Hue M La, Juho-Antti Mäkelä, Ai-Leen Chan, Fernando J Rossello, Christian M Nefzger, Julien M D Legrand, Mia De Seram, Jose M Polo, Robin M Hobbs. Nat Commun 2018
39
17

Functional hierarchy and reversibility within the murine spermatogenic stem cell compartment.
Toshinori Nakagawa, Manju Sharma, Yo-ichi Nabeshima, Robert E Braun, Shosei Yoshida. Science 2010
327
7

Plzf regulates germline progenitor self-renewal by opposing mTORC1.
Robin M Hobbs, Marco Seandel, Ilaria Falciatori, Shahin Rafii, Pier Paolo Pandolfi. Cell 2010
176
7


Single-cell RNA sequencing of adult mouse testes.
Soeren Lukassen, Elisabeth Bosch, Arif B Ekici, Andreas Winterpacht. Sci Data 2018
21
33

Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis.
Saher Sue Hammoud, Diana H P Low, Chongil Yi, Douglas T Carrell, Ernesto Guccione, Bradley R Cairns. Cell Stem Cell 2014
196
7

Cellular source and mechanisms of high transcriptome complexity in the mammalian testis.
Magali Soumillon, Anamaria Necsulea, Manuela Weier, David Brawand, Xiaolan Zhang, Hongcang Gu, Pauline Barthès, Maria Kokkinaki, Serge Nef, Andreas Gnirke,[...]. Cell Rep 2013
316
7

Construction of a human cell landscape at single-cell level.
Xiaoping Han, Ziming Zhou, Lijiang Fei, Huiyu Sun, Renying Wang, Yao Chen, Haide Chen, Jingjing Wang, Huanna Tang, Wenhao Ge,[...]. Nature 2020
256
7


RNA profiling of human testicular cells identifies syntenic lncRNAs associated with spermatogenesis.
A D Rolland, B Evrard, T A Darde, C Le Béguec, Y Le Bras, K Bensalah, S Lavoué, B Jost, M Primig, N Dejucq-Rainsford,[...]. Hum Reprod 2019
24
25

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
6

mRNA-Seq whole-transcriptome analysis of a single cell.
Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui,[...]. Nat Methods 2009
6

Growth factors essential for self-renewal and expansion of mouse spermatogonial stem cells.
Hiroshi Kubota, Mary R Avarbock, Ralph L Brinster. Proc Natl Acad Sci U S A 2004
643
6

The mammalian doublesex homolog DMRT1 is a transcriptional gatekeeper that controls the mitosis versus meiosis decision in male germ cells.
Clinton K Matson, Mark W Murphy, Michael D Griswold, Shosei Yoshida, Vivian J Bardwell, David Zarkower. Dev Cell 2010
211
6

Foxo1 is required in mouse spermatogonial stem cells for their maintenance and the initiation of spermatogenesis.
Meredith J Goertz, Zhuoru Wu, Teresa D Gallardo, F Kent Hamra, Diego H Castrillon. J Clin Invest 2011
163
6

Regulation of cell fate decision of undifferentiated spermatogonia by GDNF.
X Meng, M Lindahl, M E Hyvönen, M Parvinen, D G de Rooij, M W Hess, A Raatikainen-Ahokas, K Sainio, H Rauvala, M Lakso,[...]. Science 2000
942
6

ID4 levels dictate the stem cell state in mouse spermatogonia.
Aileen R Helsel, Qi-En Yang, Melissa J Oatley, Tessa Lord, Fred Sablitzky, Jon M Oatley. Development 2017
98
6


Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
6

Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
6

Fluorescence- and magnetic-activated cell sorting strategies to isolate and enrich human spermatogonial stem cells.
Hanna Valli, Meena Sukhwani, Serena L Dovey, Karen A Peters, Julia Donohue, Carlos A Castro, Tianjiao Chu, Gary R Marshall, Kyle E Orwig. Fertil Steril 2014
99
6

Dynamic reorganization of open chromatin underlies diverse transcriptomes during spermatogenesis.
So Maezawa, Masashi Yukawa, Kris G Alavattam, Artem Barski, Satoshi H Namekawa. Nucleic Acids Res 2018
46
13

A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development.
Walfred W C Tang, Sabine Dietmann, Naoko Irie, Harry G Leitch, Vasileios I Floros, Charles R Bradshaw, Jamie A Hackett, Patrick F Chinnery, M Azim Surani. Cell 2015
367
6

What has single-cell RNA-seq taught us about mammalian spermatogenesis?
Shinnosuke Suzuki, Victoria D Diaz, Brian P Hermann. Biol Reprod 2019
21
28

Orchitis: a complication of severe acute respiratory syndrome (SARS).
Jian Xu, Lihua Qi, Xiaochun Chi, Jingjing Yang, Xiaohong Wei, Encong Gong, Suatcheng Peh, Jiang Gu. Biol Reprod 2006
234
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.