A citation-based method for searching scientific literature

Laura S M Müller, Raúl O Cosentino, Konrad U Förstner, Julien Guizetti, Carolin Wedel, Noam Kaplan, Christian J Janzen, Panagiota Arampatzi, Jörg Vogel, Sascha Steinbiss, Thomas D Otto, Antoine-Emmanuel Saliba, Robert P Sebra, T Nicolai Siegel. Nature 2018
Times Cited: 53







List of co-cited articles
771 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The genome of the African trypanosome Trypanosoma brucei.
Matthew Berriman, Elodie Ghedin, Christiane Hertz-Fowler, Gaëlle Blandin, Hubert Renauld, Daniella C Bartholomeu, Nicola J Lennard, Elisabet Caler, Nancy E Hamlin, Brian Haas,[...]. Science 2005
41

Telomeric expression sites are highly conserved in Trypanosoma brucei.
Christiane Hertz-Fowler, Luisa M Figueiredo, Michael A Quail, Marion Becker, Andrew Jackson, Nathalie Bason, Karen Brooks, Carol Churcher, Samah Fahkro, Ian Goodhead,[...]. PLoS One 2008
175
41

VEX1 controls the allelic exclusion required for antigenic variation in trypanosomes.
Lucy Glover, Sebastian Hutchinson, Sam Alsford, David Horn. Proc Natl Acad Sci U S A 2016
50
36


Capturing the variant surface glycoprotein repertoire (the VSGnome) of Trypanosoma brucei Lister 427.
George A M Cross, Hee-Sook Kim, Bill Wickstead. Mol Biochem Parasitol 2014
88
30

RNA polymerase I transcribes procyclin genes and variant surface glycoprotein gene expression sites in Trypanosoma brucei.
Arthur Günzl, Thomas Bruderer, Gabriele Laufer, Bernd Schimanski, Lan-Chun Tu, Hui-Min Chung, Pei-Tseng Lee, Mary Gwo-Shu Lee. Eukaryot Cell 2003
162
26


Monoallelic expression and epigenetic inheritance sustained by a Trypanosoma brucei variant surface glycoprotein exclusion complex.
Joana Faria, Lucy Glover, Sebastian Hutchinson, Cordula Boehm, Mark C Field, David Horn. Nat Commun 2019
17
82

A yeast-endonuclease-generated DNA break induces antigenic switching in Trypanosoma brucei.
Catharine E Boothroyd, Oliver Dreesen, Tatyana Leonova, K Ina Ly, Luisa M Figueiredo, George A M Cross, F Nina Papavasiliou. Nature 2009
97
22

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
22

Ribonuclease H1-targeted R-loops in surface antigen gene expression sites can direct trypanosome immune evasion.
Emma Briggs, Kathryn Crouch, Leandro Lemgruber, Craig Lapsley, Richard McCulloch. PLoS Genet 2018
22
50


Antigenic variation in African trypanosomes.
David Horn. Mol Biochem Parasitol 2014
131
20


RAP1 is essential for silencing telomeric variant surface glycoprotein genes in Trypanosoma brucei.
Xiaofeng Yang, Luisa M Figueiredo, Amin Espinal, Eiji Okubo, Bibo Li. Cell 2009
112
20

TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Martin Aslett, Cristina Aurrecoechea, Matthew Berriman, John Brestelli, Brian P Brunk, Mark Carrington, Daniel P Depledge, Steve Fischer, Bindu Gajria, Xin Gao,[...]. Nucleic Acids Res 2010
546
20

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei.
T Nicolai Siegel, Doeke R Hekstra, Louise E Kemp, Luisa M Figueiredo, Joanna E Lowell, David Fenyo, Xuning Wang, Scott Dewell, George A M Cross. Genes Dev 2009
222
18

GT-rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes.
Carolin Wedel, Konrad U Förstner, Ramona Derr, T Nicolai Siegel. EMBO J 2017
31
32

Trypanosomal histone γH2A and the DNA damage response.
Lucy Glover, David Horn. Mol Biochem Parasitol 2012
60
18

A histone methyltransferase modulates antigenic variation in African trypanosomes.
Luisa M Figueiredo, Christian J Janzen, George A M Cross. PLoS Biol 2008
108
18

NUP-1 Is a large coiled-coil nucleoskeletal protein in trypanosomes with lamin-like functions.
Kelly N DuBois, Sam Alsford, Jennifer M Holden, Johanna Buisson, Michal Swiderski, Jean-Mathieu Bart, Alexander V Ratushny, Yakun Wan, Philippe Bastin, J David Barry,[...]. PLoS Biol 2012
77
18

The in vivo dynamics of antigenic variation in Trypanosoma brucei.
Monica R Mugnier, George A M Cross, F Nina Papavasiliou. Science 2015
73
18

Suppression of subtelomeric VSG switching by Trypanosoma brucei TRF requires its TTAGGG repeat-binding activity.
Sanaa E Jehi, Xiaohua Li, Ranjodh Sandhu, Fei Ye, Imaan Benmerzouga, Mingjie Zhang, Yanxiang Zhao, Bibo Li. Nucleic Acids Res 2014
24
41

Trypanosoma brucei ribonuclease H2A is an essential R-loop processing enzyme whose loss causes DNA damage during transcription initiation and antigenic variation.
Emma Briggs, Kathryn Crouch, Leandro Lemgruber, Graham Hamilton, Craig Lapsley, Richard McCulloch. Nucleic Acids Res 2019
11
90

DNA Recombination Strategies During Antigenic Variation in the African Trypanosome.
Richard McCulloch, Liam J Morrison, James P J Hall. Microbiol Spectr 2015
40
22

Base J and H3.V Regulate Transcriptional Termination in Trypanosoma brucei.
Danae Schulz, Maryam Zaringhalam, F Nina Papavasiliou, Hee-Sook Kim. PLoS Genet 2016
24
37


TrypTag.org: A Trypanosome Genome-wide Protein Localisation Resource.
Samuel Dean, Jack D Sunter, Richard J Wheeler. Trends Parasitol 2017
100
16

Regulators of Trypanosoma brucei cell cycle progression and differentiation identified using a kinome-wide RNAi screen.
Nathaniel G Jones, Elizabeth B Thomas, Elaine Brown, Nicholas J Dickens, Tansy C Hammarton, Jeremy C Mottram. PLoS Pathog 2014
100
16


Cohesin regulates VSG monoallelic expression in trypanosomes.
David Landeira, Jean-Mathieu Bart, Daria Van Tyne, Miguel Navarro. J Cell Biol 2009
55
16


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
16






Trypanosoma brucei RAP1 maintains telomere and subtelomere integrity by suppressing TERRA and telomeric RNA:DNA hybrids.
Vishal Nanavaty, Ranjodh Sandhu, Sanaa E Jehi, Unnati M Pandya, Bibo Li. Nucleic Acids Res 2017
29
31

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
16


The role of genomic location and flanking 3'UTR in the generation of functional levels of variant surface glycoprotein in Trypanosoma brucei.
Sophie Ridewood, Cher-Pheng Ooi, Belinda Hall, Anna Trenaman, Nadina Vasileva Wand, Georgios Sioutas, Iris Scherwitzl, Gloria Rudenko. Mol Microbiol 2017
15
53

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome.
Sam Alsford, Daniel J Turner, Samson O Obado, Alejandro Sanchez-Flores, Lucy Glover, Matthew Berriman, Christiane Hertz-Fowler, David Horn. Genome Res 2011
291
15

Trypanosome telomeres are protected by a homologue of mammalian TRF2.
Bibo Li, Amin Espinal, George A M Cross. Mol Cell Biol 2005
57
15


SUMOylation by the E3 ligase TbSIZ1/PIAS1 positively regulates VSG expression in Trypanosoma brucei.
Diana López-Farfán, Jean-Mathieu Bart, Domingo I Rojas-Barros, Miguel Navarro. PLoS Pathog 2014
27
29

Mapping replication dynamics in Trypanosoma brucei reveals a link with telomere transcription and antigenic variation.
Rebecca Devlin, Catarina A Marques, Daniel Paape, Marko Prorocic, Andrea C Zurita-Leal, Samantha J Campbell, Craig Lapsley, Nicholas Dickens, Richard McCulloch. Elife 2016
27
29

Mono-allelic VSG expression by RNA polymerase I in Trypanosoma brucei: expression site control from both ends?
Arthur Günzl, Justin K Kirkham, Tu N Nguyen, Nitika Badjatia, Sung Hee Park. Gene 2015
27
29

Telomere length affects the frequency and mechanism of antigenic variation in Trypanosoma brucei.
Galadriel A Hovel-Miner, Catharine E Boothroyd, Monica Mugnier, Oliver Dreesen, George A M Cross, F Nina Papavasiliou. PLoS Pathog 2012
43
18



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.