A citation-based method for searching scientific literature

Francisco Javier Rendón-Gandarilla, Víctor Álvarez-Hernández, Elizabeth J Castañeda-Ortiz, Helios Cárdenas-Hernández, Rosa Elena Cárdenas-Guerra, Jesús Valdés, Abigail Betanzos, Bibiana Chávez-Munguía, Anel Lagunes-Guillen, Esther Orozco, Lilia López-Canovas, Elisa Azuara-Liceaga. Front Cell Infect Microbiol 2018
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
100


Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
100

Trichostatin A regulates peroxiredoxin expression and virulence of the parasite Entamoeba histolytica.
Elada Isakov, Rama Siman-Tov, Christian Weber, Nancy Guillen, Serge Ankri. Mol Biochem Parasitol 2008
17
100


TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
100

Drug inhibition of HDAC3 and epigenetic control of differentiation in Apicomplexa parasites.
Alexandre Bougdour, Danièle Maubon, Patricia Baldacci, Philippe Ortet, Olivier Bastien, Anthony Bouillon, Jean-Christophe Barale, Hervé Pelloux, Robert Ménard, Mohamed-Ali Hakimi. J Exp Med 2009
96
100

Cyst and encystment in protozoan parasites: optimal targets for new life-cycle interrupting strategies?
Hugo Aguilar-Díaz, Julio César Carrero, Raúl Argüello-García, Juan Pedro Laclette, Jorge Morales-Montor. Trends Parasitol 2011
37
100

GABA induces terminal differentiation of Dictyostelium through a GABAB receptor.
Christophe Anjard, William F Loomis. Development 2006
53
100

Sequence and organization of an unusual histone H4 gene in the human parasite Entamoeba histolytica.
M Binder, S Ortner, B Plaimauer, M Födinger, G Wiedermann, O Scheiner, M Duchêne. Mol Biochem Parasitol 1995
20
100

Osmotic stress as a factor controlling encystation of Entamoeba invadens.
G B Bailey, S Rengypian. Arch Invest Med (Mex) 1980
26
100


Synergistic induction of DOC-2/DAB2 gene expression in transitional cell carcinoma in the presence of GATA6 and histone deacetylase inhibitor.
Jian Zhou, Gina Hernandez, Szu-Wei Tu, Jessica Scholes, Hong Chen, Ching-Ping Tseng, Jer-Tsong Hsieh. Cancer Res 2005
19
100

Metabolomic analysis of Entamoeba: applications and implications.
Ghulam Jeelani, Tomoyoshi Nozaki. Curr Opin Microbiol 2014
17
100


Histone acetyltransferases and deacetylase in Entamoeba histolytica.
Girija Ramakrishnan, Carol A Gilchrist, Hussein Musa, Michael S Torok, Patrick A Grant, Barbara J Mann, William A Petri. Mol Biochem Parasitol 2004
34
100

Epigenetic transcriptional gene silencing in Entamoeba histolytica: insight into histone and chromatin modifications.
Maya Huguenin, Rivka Bracha, Thanat Chookajorn, David Mirelman. Parasitology 2010
18
100

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.
Konstantin Arnold, Lorenza Bordoli, Jürgen Kopp, Torsten Schwede. Bioinformatics 2006
100

The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation.
Gretchen M Ehrenkaufer, Gareth D Weedall, Daryl Williams, Hernan A Lorenzi, Elisabet Caler, Neil Hall, Upinder Singh. Genome Biol 2013
57
100


Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors.
M S Finnin, J R Donigian, A Cohen, V M Richon, R A Rifkind, P A Marks, R Breslow, N P Pavletich. Nature 1999
100

Trichostatin A effects on gene expression in the protozoan parasite Entamoeba histolytica.
Gretchen M Ehrenkaufer, Daniel J Eichinger, Upinder Singh. BMC Genomics 2007
33
100

A simple fibril and lectin model for cyst walls of Entamoeba and perhaps Giardia.
John Samuelson, Phillips Robbins. Trends Parasitol 2011
23
100

Evidence for a "wattle and daub" model of the cyst wall of entamoeba.
Anirban Chatterjee, Sudip K Ghosh, Ken Jang, Esther Bullitt, Landon Moore, Phillips W Robbins, John Samuelson. PLoS Pathog 2009
42
100

Encystation of entamoeba parasites.
D Eichinger. Bioessays 1997
55
100

Effects of heat shock on amino Acid metabolism of cowpea cells.
R R Mayer, J H Cherry, D Rhodes. Plant Physiol 1990
59
100

Entamoeba histolytica: protein arginine transferase 1a methylates arginine residues and potentially modify the H4 histone.
Jessica Borbolla-Vázquez, Esther Orozco, Abigail Betanzos, Mario A Rodríguez. Parasit Vectors 2015
8
100

Colonic short-chain fatty acids inhibit encystation of Entamoeba invadens.
Jennifer Byers, Wolfgang Faigle, Daniel Eichinger. Cell Microbiol 2005
30
100


Identification of repressive and active epigenetic marks and nuclear bodies in Entamoeba histolytica.
Daniela Lozano-Amado, Abril Marcela Herrera-Solorio, Jesús Valdés, Leticia Alemán-Lazarini, Ma de Jesús Almaraz-Barrera, Eva Luna-Rivera, Miguel Vargas, Rosaura Hernández-Rivas. Parasit Vectors 2016
5
100

Development of RNA Interference Trigger-Mediated Gene Silencing in Entamoeba invadens.
Susmitha Suresh, Gretchen Ehrenkaufer, Hanbang Zhang, Upinder Singh. Infect Immun 2016
10
100

The old and new biochemistry of polyamines.
Dong-Hun Bae, Darius J R Lane, Patric J Jansson, Des R Richardson. Biochim Biophys Acta Gen Subj 2018
52
100

Zinc binding groups for histone deacetylase inhibitors.
Lei Zhang, Jian Zhang, Qixiao Jiang, Li Zhang, Weiguo Song. J Enzyme Inhib Med Chem 2018
53
100



Structure of HDAC3 bound to co-repressor and inositol tetraphosphate.
Peter J Watson, Louise Fairall, Guilherme M Santos, John W R Schwabe. Nature 2012
275
100




SWISS-MODEL: An automated protein homology-modeling server.
Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C Peitsch. Nucleic Acids Res 2003
100

The roles of polyamines in microorganisms.
Aslıhan Örs Gevrekci. World J Microbiol Biotechnol 2017
22
100

A new medium for the axenic cultivation of Entamoeba histolytica and other Entamoeba.
L S Diamond, D R Harlow, C C Cunnick. Trans R Soc Trop Med Hyg 1978
100

Pathogenic Entamoeba histolytica: cDNA cloning of a histone H3 with a divergent primary structure.
M Födinger, S Ortner, B Plaimauer, G Wiedermann, O Scheiner, M Duchêne. Mol Biochem Parasitol 1993
27
100

Identification and functional characterization of lysine methyltransferases of Entamoeba histolytica.
Jessica Borbolla-Vázquez, Esther Orozco, Christian Medina-Gómez, Aarón Martínez-Higuera, Rosario Javier-Reyna, Bibiana Chávez, Abigail Betanzos, Mario A Rodríguez. Mol Microbiol 2016
1
100

Epigenetic mechanisms regulate stage differentiation in the minimized protozoan Giardia lamblia.
Sabrina Sonda, Laura Morf, Iveta Bottova, Hansruedi Baetschmann, Hubert Rehrauer, Amedeo Caflisch, Mohamed-Ali Hakimi, Adrian B Hehl. Mol Microbiol 2010
52
100

Metabolic profiling of the protozoan parasite Entamoeba invadens revealed activation of unpredicted pathway during encystation.
Ghulam Jeelani, Dan Sato, Afzal Husain, Aleyla Escueta-de Cadiz, Masahiro Sugimoto, Tomoyoshi Soga, Makoto Suematsu, Tomoyoshi Nozaki. PLoS One 2012
39
100

A Review of the Global Burden, New Diagnostics, and Current Therapeutics for Amebiasis.
Debbie-Ann T Shirley, Laura Farr, Koji Watanabe, Shannon Moonah. Open Forum Infect Dis 2018
81
100


Metabolite profiling of the intraerythrocytic malaria parasite Plasmodium falciparum by (1)H NMR spectroscopy.
Rongwei Teng, Pauline R Junankar, William A Bubb, Caroline Rae, Pascal Mercier, Kiaran Kirk. NMR Biomed 2009
81
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.