A citation-based method for searching scientific literature

Pei-Chien Tsai, Craig A Glastonbury, Melissa N Eliot, Sailalitha Bollepalli, Idil Yet, Juan E Castillo-Fernandez, Elena Carnero-Montoro, Thomas Hardiman, Tiphaine C Martin, Alice Vickers, Massimo Mangino, Kirsten Ward, Kirsi H Pietiläinen, Panos Deloukas, Tim D Spector, Ana Viñuela, Eric B Loucks, Miina Ollikainen, Karl T Kelsey, Kerrin S Small, Jordana T Bell. Clin Epigenetics 2018
Times Cited: 43







List of co-cited articles
219 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Epigenetic Signatures of Cigarette Smoking.
Roby Joehanes, Allan C Just, Riccardo E Marioni, Luke C Pilling, Lindsay M Reynolds, Pooja R Mandaviya, Weihua Guan, Tao Xu, Cathy E Elks, Stella Aslibekyan,[...]. Circ Cardiovasc Genet 2016
346
32

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
16

Tobacco smoking leads to extensive genome-wide changes in DNA methylation.
Sonja Zeilinger, Brigitte Kühnel, Norman Klopp, Hansjörg Baurecht, Anja Kleinschmidt, Christian Gieger, Stephan Weidinger, Eva Lattka, Jerzy Adamski, Annette Peters,[...]. PLoS One 2013
460
13

Tobacco-smoking-related differential DNA methylation: 27K discovery and replication.
Lutz P Breitling, Rongxi Yang, Bernhard Korn, Barbara Burwinkel, Hermann Brenner. Am J Hum Genet 2011
441
13

DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis.
Bonnie R Joubert, Janine F Felix, Paul Yousefi, Kelly M Bakulski, Allan C Just, Carrie Breton, Sarah E Reese, Christina A Markunas, Rebecca C Richmond, Cheng-Jian Xu,[...]. Am J Hum Genet 2016
382
13

Tobacco smoking-associated genome-wide DNA methylation changes in the EPIC study.
Srikant Ambatipudi, Cyrille Cuenin, Hector Hernandez-Vargas, Akram Ghantous, Florence Le Calvez-Kelm, Rudolf Kaaks, Myrto Barrdahl, Heiner Boeing, Krasimira Aleksandrova, Antonia Trichopoulou,[...]. Epigenomics 2016
125
11

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
503
11

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
11

Coordinated changes in AHRR methylation in lymphoblasts and pulmonary macrophages from smokers.
Martha M Monick, Steven R H Beach, Jeff Plume, Rory Sears, Meg Gerrard, Gene H Brody, Robert A Philibert. Am J Med Genet B Neuropsychiatr Genet 2012
182
9

Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity.
Simone Wahl, Alexander Drong, Benjamin Lehne, Marie Loh, William R Scott, Sonja Kunze, Pei-Chien Tsai, Janina S Ried, Weihua Zhang, Youwen Yang,[...]. Nature 2017
398
9

DNA methylation in the pathogenesis of type 2 diabetes in humans.
Cajsa Davegårdh, Sonia García-Calzón, Karl Bacos, Charlotte Ling. Mol Metab 2018
81
9

Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation.
Loukia G Tsaprouni, Tsun-Po Yang, Jordana Bell, Katherine J Dick, Stavroula Kanoni, James Nisbet, Ana Viñuela, Elin Grundberg, Christopher P Nelson, Eshwar Meduri,[...]. Epigenetics 2014
187
9

Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation.
Florence Guida, Torkjel M Sandanger, Raphaële Castagné, Gianluca Campanella, Silvia Polidoro, Domenico Palli, Vittorio Krogh, Rosario Tumino, Carlotta Sacerdote, Salvatore Panico,[...]. Hum Mol Genet 2015
165
9


Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
9


AHRR (cg05575921) hypomethylation marks smoking behaviour, morbidity and mortality.
Stig E Bojesen, Nicholas Timpson, Caroline Relton, George Davey Smith, Børge G Nordestgaard. Thorax 2017
65
9

Disease variants alter transcription factor levels and methylation of their binding sites.
Marc Jan Bonder, René Luijk, Daria V Zhernakova, Matthijs Moed, Patrick Deelen, Martijn Vermaat, Maarten van Iterson, Freerk van Dijk, Michiel van Galen, Jan Bot,[...]. Nat Genet 2017
204
9

Epigenomic association analysis identifies smoking-related DNA methylation sites in African Americans.
Yan V Sun, Alicia K Smith, Karen N Conneely, Qiuzhi Chang, Weiyan Li, Alicia Lazarus, Jennifer A Smith, Lynn M Almli, Elisabeth B Binder, Torsten Klengel,[...]. Hum Genet 2013
105
6

Demethylation of the aryl hydrocarbon receptor repressor as a biomarker for nascent smokers.
Robert A Philibert, Steven R H Beach, Gene H Brody. Epigenetics 2012
112
6

Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking.
Natalie S Shenker, Silvia Polidoro, Karin van Veldhoven, Carlotta Sacerdote, Fulvio Ricceri, Mark A Birrell, Maria G Belvisi, Robert Brown, Paolo Vineis, James M Flanagan. Hum Mol Genet 2013
272
6

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
6

Epigenome-wide association of DNA methylation markers in peripheral blood from Indian Asians and Europeans with incident type 2 diabetes: a nested case-control study.
John C Chambers, Marie Loh, Benjamin Lehne, Alexander Drong, Jennifer Kriebel, Valeria Motta, Simone Wahl, Hannah R Elliott, Federica Rota, William R Scott,[...]. Lancet Diabetes Endocrinol 2015
221
6

Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach.
Michael M Mendelson, Riccardo E Marioni, Roby Joehanes, Chunyu Liu, Åsa K Hedman, Stella Aslibekyan, Ellen W Demerath, Weihua Guan, Degui Zhi, Chen Yao,[...]. PLoS Med 2017
129
6

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
6

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
389
6

450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy.
Bonnie R Joubert, Siri E Håberg, Roy M Nilsen, Xuting Wang, Stein E Vollset, Susan K Murphy, Zhiqing Huang, Cathrine Hoyo, Øivind Midttun, Lea A Cupul-Uicab,[...]. Environ Health Perspect 2012
462
6

Correlation of Smoking-Associated DNA Methylation Changes in Buccal Cells With DNA Methylation Changes in Epithelial Cancer.
Andrew E Teschendorff, Zhen Yang, Andrew Wong, Christodoulos P Pipinikas, Yinming Jiao, Allison Jones, Shahzia Anjum, Rebecca Hardy, Helga B Salvesen, Christina Thirlwell,[...]. JAMA Oncol 2015
118
6

Functional normalization of 450k methylation array data improves replication in large cancer studies.
Jean-Philippe Fortin, Aurélie Labbe, Mathieu Lemire, Brent W Zanke, Thomas J Hudson, Elana J Fertig, Celia Mt Greenwood, Kasper D Hansen. Genome Biol 2014
345
6

Prenatal exposure to maternal smoking and offspring DNA methylation across the lifecourse: findings from the Avon Longitudinal Study of Parents and Children (ALSPAC).
Rebecca C Richmond, Andrew J Simpkin, Geoff Woodward, Tom R Gaunt, Oliver Lyttleton, Wendy L McArdle, Susan M Ring, Andrew D A C Smith, Nicholas J Timpson, Kate Tilling,[...]. Hum Mol Genet 2015
224
6

Hypomethylation of smoking-related genes is associated with future lung cancer in four prospective cohorts.
Francesca Fasanelli, Laura Baglietto, Erica Ponzi, Florence Guida, Gianluca Campanella, Mattias Johansson, Kjell Grankvist, Mikael Johansson, Manuela Bianca Assumma, Alessio Naccarati,[...]. Nat Commun 2015
119
6

Transcription factors as readers and effectors of DNA methylation.
Heng Zhu, Guohua Wang, Jiang Qian. Nat Rev Genet 2016
236
6

CpG and Non-CpG Methylation in Epigenetic Gene Regulation and Brain Function.
Hyun Sik Jang, Woo Jung Shin, Jeong Eon Lee, Jeong Tae Do. Genes (Basel) 2017
129
6


Novel DNA methylation sites associated with cigarette smoking among African Americans.
Veronica Barcelona, Yunfeng Huang, Kristen Brown, Jiaxuan Liu, Wei Zhao, Miao Yu, Sharon L R Kardia, Jennifer A Smith, Jacquelyn Y Taylor, Yan V Sun. Epigenetics 2019
14
21

Systematic identification of genetic influences on methylation across the human life course.
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
260
6

coMET: visualisation of regional epigenome-wide association scan results and DNA co-methylation patterns.
Tiphaine C Martin, Idil Yet, Pei-Chien Tsai, Jordana T Bell. BMC Bioinformatics 2015
71
6

A whole-blood transcriptome meta-analysis identifies gene expression signatures of cigarette smoking.
Tianxiao Huan, Roby Joehanes, Claudia Schurmann, Katharina Schramm, Luke C Pilling, Marjolein J Peters, Reedik Mägi, Dawn DeMeo, George T O'Connor, Luigi Ferrucci,[...]. Hum Mol Genet 2016
54
6

Differential gene expression patterns between smokers and non-smokers: cause or consequence?
Jacqueline M Vink, Rick Jansen, Andy Brooks, Gonneke Willemsen, Gerard van Grootheest, Eco de Geus, Jan H Smit, Brenda W Penninx, Dorret I Boomsma. Addict Biol 2017
28
10

A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies.
Benjamin Lehne, Alexander W Drong, Marie Loh, Weihua Zhang, William R Scott, Sian-Tsung Tan, Uzma Afzal, James Scott, Marjo-Riitta Jarvelin, Paul Elliott,[...]. Genome Biol 2015
156
6

Cohort Profile: the INMA--INfancia y Medio Ambiente--(Environment and Childhood) Project.
Mònica Guxens, Ferran Ballester, Mercedes Espada, Mariana F Fernández, Joan O Grimalt, Jesús Ibarluzea, Nicolás Olea, Marisa Rebagliato, Adonina Tardón, Maties Torrent,[...]. Int J Epidemiol 2012
357
6

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
829
6

DNA Methylation Analysis Identifies Loci for Blood Pressure Regulation.
Melissa A Richard, Tianxiao Huan, Symen Ligthart, Rahul Gondalia, Min A Jhun, Jennifer A Brody, Marguerite R Irvin, Riccardo Marioni, Jincheng Shen, Pei-Chien Tsai,[...]. Am J Hum Genet 2017
60
6

Blood lipids influence DNA methylation in circulating cells.
Koen F Dekkers, Maarten van Iterson, Roderick C Slieker, Matthijs H Moed, Marc Jan Bonder, Michiel van Galen, Hailiang Mei, Daria V Zhernakova, Leonard H van den Berg, Joris Deelen,[...]. Genome Biol 2016
100
6

Cohort Profile: Generation Scotland: Scottish Family Health Study (GS:SFHS). The study, its participants and their potential for genetic research on health and illness.
Blair H Smith, Archie Campbell, Pamela Linksted, Bridie Fitzpatrick, Cathy Jackson, Shona M Kerr, Ian J Deary, Donald J Macintyre, Harry Campbell, Mark McGilchrist,[...]. Int J Epidemiol 2013
164
6

Changes in DNA methylation at the aryl hydrocarbon receptor repressor may be a new biomarker for smoking.
Robert A Philibert, Steven R H Beach, Man-Kit Lei, Gene H Brody. Clin Epigenetics 2013
114
4

Differences in smoking associated DNA methylation patterns in South Asians and Europeans.
Hannah R Elliott, Therese Tillin, Wendy L McArdle, Karen Ho, Aparna Duggirala, Tim M Frayling, George Davey Smith, Alun D Hughes, Nish Chaturvedi, Caroline L Relton. Clin Epigenetics 2014
146
4


Tobacco smoking differently influences cell types of the innate and adaptive immune system-indications from CpG site methylation.
Mario Bauer, Beate Fink, Loreen Thürmann, Markus Eszlinger, Gunda Herberth, Irina Lehmann. Clin Epigenetics 2016
53
4

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.