A citation-based method for searching scientific literature

Kyu-Hyeon Yeom, Simon Mitchell, Anthony J Linares, Sika Zheng, Chia-Ho Lin, Xiao-Jun Wang, Alexander Hoffmann, Douglas L Black. Proc Natl Acad Sci U S A 2018
Times Cited: 12







List of co-cited articles
49 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.
Eugene V Makeyev, Jiangwen Zhang, Monica A Carrasco, Tom Maniatis. Mol Cell 2007
986
58

Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay.
Matthew C Wollerton, Clare Gooding, Eric J Wagner, Mariano A Garcia-Blanco, Christopher W J Smith. Mol Cell 2004
299
25

A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons.
Paul L Boutz, Peter Stoilov, Qin Li, Chia-Ho Lin, Geetanjali Chawla, Kristin Ostrow, Lily Shiue, Manuel Ares, Douglas L Black. Genes Dev 2007
375
25

PTBP1-associated microRNA-1 and -133b suppress the Warburg effect in colorectal tumors.
Kohei Taniguchi, Miku Sakai, Nobuhiko Sugito, Minami Kumazaki, Haruka Shinohara, Nami Yamada, Tatsushi Nakayama, Hiroshi Ueda, Yoshihito Nakagawa, Yuko Ito,[...]. Oncotarget 2016
54
25

Modulation of PKM alternative splicing by PTBP1 promotes gemcitabine resistance in pancreatic cancer cells.
S Calabretta, P Bielli, I Passacantilli, E Pilozzi, V Fendrich, G Capurso, G Delle Fave, C Sette. Oncogene 2016
123
25

Mammalian microRNAs predominantly act to decrease target mRNA levels.
Huili Guo, Nicholas T Ingolia, Jonathan S Weissman, David P Bartel. Nature 2010
25

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
25

Role for a bidentate ribonuclease in the initiation step of RNA interference.
E Bernstein, A A Caudy, S M Hammond, G J Hannon. Nature 2001
25


miR-124 inhibits STAT3 signaling to enhance T cell-mediated immune clearance of glioma.
Jun Wei, Fei Wang, Ling-Yuan Kong, Shuo Xu, Tiffany Doucette, Sherise D Ferguson, Yuhui Yang, Kayla McEnery, Krishan Jethwa, Olsi Gjyshi,[...]. Cancer Res 2013
179
16

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
16

PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2.
Sika Zheng, Erin E Gray, Geetanjali Chawla, Bo Torben Porse, Thomas J O'Dell, Douglas L Black. Nat Neurosci 2012
144
16

A mammalian microRNA expression atlas based on small RNA library sequencing.
Pablo Landgraf, Mirabela Rusu, Robert Sheridan, Alain Sewer, Nicola Iovino, Alexei Aravin, Sébastien Pfeffer, Amanda Rice, Alice O Kamphorst, Markus Landthaler,[...]. Cell 2007
16

Perturbation of energy metabolism by fatty-acid derivative AIC-47 and imatinib in BCR-ABL-harboring leukemic cells.
Haruka Shinohara, Minami Kumazaki, Yosuke Minami, Yuko Ito, Nobuhiko Sugito, Yuki Kuranaga, Kohei Taniguchi, Nami Yamada, Yoshinori Otsuki, Tomoki Naoe,[...]. Cancer Lett 2016
28
16

Polypyrimidine tract binding protein 1 promotes lymphatic metastasis and proliferation of bladder cancer via alternative splicing of MEIS2 and PKM.
Ruihui Xie, Xu Chen, Ziyue Chen, Ming Huang, Wen Dong, Peng Gu, Jingtong Zhang, Qianghua Zhou, Wei Dong, Jinli Han,[...]. Cancer Lett 2019
52
16


Cancer-Specific Energy Metabolism in Rhabdomyosarcoma Cells Is Regulated by MicroRNA.
Nobuhiko Sugito, Kohei Taniguchi, Yuki Kuranaga, Maki Ohishi, Tomoyoshi Soga, Yuko Ito, Mitsuru Miyachi, Ken Kikuchi, Hajime Hosoi, Yukihiro Akao. Nucleic Acid Ther 2017
14
16

The impact of microRNAs on protein output.
Daehyun Baek, Judit Villén, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel. Nature 2008
16



Organ-Specific MicroRNAs (MIR122, 137, and 206) Contribute to Tissue Characteristics and Carcinogenesis by Regulating Pyruvate Kinase M1/2 (PKM) Expression.
Kohei Taniguchi, Nobuhiko Sugito, Haruka Shinohara, Yuki Kuranaga, Yosuke Inomata, Kazumasa Komura, Kazuhisa Uchiyama, Yukihiro Akao. Int J Mol Sci 2018
14
16

A functional study of miR-124 in the developing neural tube.
Xinwei Cao, Samuel L Pfaff, Fred H Gage. Genes Dev 2007
276
16


Identification of tissue-specific microRNAs from mouse.
Mariana Lagos-Quintana, Reinhard Rauhut, Abdullah Yalcin, Jutta Meyer, Winfried Lendeckel, Thomas Tuschl. Curr Biol 2002
16

A miR-194/PTBP1/CCND3 axis regulates tumor growth in human hepatocellular carcinoma.
Hoin Kang, Sungeun Heo, Jung Jae Shin, Eunbyul Ji, Hyosun Tak, Sojin Ahn, Kyung Jin Lee, Eun Kyung Lee, Wook Kim. J Pathol 2019
19
16

HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer.
Charles J David, Mo Chen, Marcela Assanah, Peter Canoll, James L Manley. Nature 2010
717
16

Expression of the splicing regulator polypyrimidine tract-binding protein in normal and neoplastic brain.
Ian E McCutcheon, Stephen J Hentschel, Gregory N Fuller, Wei Jin, Gilbert J Cote. Neuro Oncol 2004
37
16

Organ-specific PTB1-associated microRNAs determine expression of pyruvate kinase isoforms.
Kohei Taniguchi, Yuko Ito, Nobuhiko Sugito, Minami Kumazaki, Haruka Shinohara, Nami Yamada, Yoshihito Nakagawa, Tarou Sugiyama, Manabu Futamura, Yoshinori Otsuki,[...]. Sci Rep 2015
41
16




The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
16

The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development.
Jaya Visvanathan, Seunghee Lee, Bora Lee, Jae W Lee, Soo-Kyung Lee. Genes Dev 2007
502
16

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.
Antonio J Giraldez, Yuichiro Mishima, Jason Rihel, Russell J Grocock, Stijn Van Dongen, Kunio Inoue, Anton J Enright, Alexander F Schier. Science 2006
16

PTB/nPTB: master regulators of neuronal fate in mammals.
Jing Hu, Hao Qian, Yuanchao Xue, Xiang-Dong Fu. Biophys Rep 2018
23
16

Reversing a model of Parkinson's disease with in situ converted nigral neurons.
Hao Qian, Xinjiang Kang, Jing Hu, Dongyang Zhang, Zhengyu Liang, Fan Meng, Xuan Zhang, Yuanchao Xue, Roy Maimon, Steven F Dowdy,[...]. Nature 2020
149
16

Glia-to-Neuron Conversion by CRISPR-CasRx Alleviates Symptoms of Neurological Disease in Mice.
Haibo Zhou, Jinlin Su, Xinde Hu, Changyang Zhou, He Li, Zhaorong Chen, Qingquan Xiao, Bo Wang, Wenyan Wu, Yidi Sun,[...]. Cell 2020
146
16

Asymmetry in the assembly of the RNAi enzyme complex.
Dianne S Schwarz, György Hutvágner, Tingting Du, Zuoshang Xu, Neil Aronin, Phillip D Zamore. Cell 2003
16

Direct conversion of fibroblasts to neurons by reprogramming PTB-regulated microRNA circuits.
Yuanchao Xue, Kunfu Ouyang, Jie Huang, Yu Zhou, Hong Ouyang, Hairi Li, Gang Wang, Qijia Wu, Chaoliang Wei, Yanzhen Bi,[...]. Cell 2013
362
16

Pairing beyond the Seed Supports MicroRNA Targeting Specificity.
James P Broughton, Michael T Lovci, Jessica L Huang, Gene W Yeo, Amy E Pasquinelli. Mol Cell 2016
194
16


Tissue-specific control of brain-enriched miR-7 biogenesis.
Nila Roy Choudhury, Flavia de Lima Alves, Luisa de Andrés-Aguayo, Thomas Graf, Javier F Cáceres, Juri Rappsilber, Gracjan Michlewski. Genes Dev 2013
101
16

Processing of primary microRNAs by the Microprocessor complex.
Ahmet M Denli, Bastiaan B J Tops, Ronald H A Plasterk, René F Ketting, Gregory J Hannon. Nature 2004
16

Towards a molecular understanding of microRNA-mediated gene silencing.
Stefanie Jonas, Elisa Izaurralde. Nat Rev Genet 2015
16

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
16

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Marc R Friedländer, Sebastian D Mackowiak, Na Li, Wei Chen, Nikolaus Rajewsky. Nucleic Acids Res 2012
16

The role of MicroRNAs in human cancer.
Yong Peng, Carlo M Croce. Signal Transduct Target Ther 2016
980
16

A splicing-independent function of SF2/ASF in microRNA processing.
Han Wu, Shuying Sun, Kang Tu, Yuan Gao, Bin Xie, Adrian R Krainer, Jun Zhu. Mol Cell 2010
138
16

A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.
G Hutvágner, J McLachlan, A E Pasquinelli, E Bálint, T Tuschl, P D Zamore. Science 2001
16

Rev-mediated nuclear export of RNA is dominant over nuclear retention and is coupled to the Ran-GTPase cycle.
U Fischer, V W Pollard, R Lührmann, M Teufel, M W Michael, G Dreyfuss, M H Malim. Nucleic Acids Res 1999
37
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.