A citation-based method for searching scientific literature

Brian P Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D Lehle, Max Mayo, Birgit Westernströer, Nathan C Law, Melissa J Oatley, Ellen K Velte, Bryan A Niedenberger, Danielle Fritze, Sherman Silber, Christopher B Geyer, Jon M Oatley, John R McCarrey. Cell Rep 2018
Times Cited: 189







List of co-cited articles
1038 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The adult human testis transcriptional cell atlas.
Jingtao Guo, Edward J Grow, Hana Mlcochova, Geoffrey J Maher, Cecilia Lindskog, Xichen Nie, Yixuan Guo, Yodai Takei, Jina Yun, Long Cai,[...]. Cell Res 2018
208
36

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq.
Christopher Daniel Green, Qianyi Ma, Gabriel L Manske, Adrienne Niederriter Shami, Xianing Zheng, Simone Marini, Lindsay Moritz, Caleb Sultan, Stephen J Gurczynski, Bethany B Moore,[...]. Dev Cell 2018
158
36

Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis.
Mei Wang, Xixi Liu, Gang Chang, Yidong Chen, Geng An, Liying Yan, Shuai Gao, Yanwen Xu, Yueli Cui, Ji Dong,[...]. Cell Stem Cell 2018
151
31

The Neonatal and Adult Human Testis Defined at the Single-Cell Level.
Abhishek Sohni, Kun Tan, Hye-Won Song, Dana Burow, Dirk G de Rooij, Louise Laurent, Tung-Chin Hsieh, Raja Rabah, Saher Sue Hammoud, Elena Vicini,[...]. Cell Rep 2019
109
28

Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis.
Adrienne Niederriter Shami, Xianing Zheng, Sarah K Munyoki, Qianyi Ma, Gabriel L Manske, Christopher D Green, Meena Sukhwani, Kyle E Orwig, Jun Z Li, Saher Sue Hammoud. Dev Cell 2020
51
39

Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development.
Jingtao Guo, Edward J Grow, Chongil Yi, Hana Mlcochova, Geoffrey J Maher, Cecilia Lindskog, Patrick J Murphy, Candice L Wike, Douglas T Carrell, Anne Goriely,[...]. Cell Stem Cell 2017
119
18

Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis.
Yao Chen, Yuxuan Zheng, Yun Gao, Zhen Lin, Suming Yang, Tongtong Wang, Qiu Wang, Nannan Xie, Rong Hua, Mingxi Liu,[...]. Cell Res 2018
131
17

The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty.
Jingtao Guo, Xichen Nie, Maria Giebler, Hana Mlcochova, Yueqi Wang, Edward J Grow, Robin Kim, Melissa Tharmalingam, Gabriele Matilionyte, Cecilia Lindskog,[...]. Cell Stem Cell 2020
62
27

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis.
Christina Ernst, Nils Eling, Celia P Martinez-Jimenez, John C Marioni, Duncan T Odom. Nat Commun 2019
73
21

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
15

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
14

Functional and molecular features of the Id4+ germline stem cell population in mouse testes.
Frieda Chan, Melissa J Oatley, Amy V Kaucher, Qi-En Yang, Charles J Bieberich, Cooduvalli S Shashikant, Jon M Oatley. Genes Dev 2014
139
13

ID4 levels dictate the stem cell state in mouse spermatogonia.
Aileen R Helsel, Qi-En Yang, Melissa J Oatley, Tessa Lord, Fred Sablitzky, Jon M Oatley. Development 2017
98
13

Growth factors essential for self-renewal and expansion of mouse spermatogonial stem cells.
Hiroshi Kubota, Mary R Avarbock, Ralph L Brinster. Proc Natl Acad Sci U S A 2004
643
12

Unraveling transcriptome dynamics in human spermatogenesis.
Sabrina Z Jan, Tinke L Vormer, Aldo Jongejan, Michael D Röling, Sherman J Silber, Dirk G de Rooij, Geert Hamer, Sjoerd Repping, Ans M M van Pelt. Development 2017
82
13

Regulation of cell fate decision of undifferentiated spermatogonia by GDNF.
X Meng, M Lindahl, M E Hyvönen, M Parvinen, D G de Rooij, M W Hess, A Raatikainen-Ahokas, K Sainio, H Rauvala, M Lakso,[...]. Science 2000
942
11

Identification of dynamic undifferentiated cell states within the male germline.
Hue M La, Juho-Antti Mäkelä, Ai-Leen Chan, Fernando J Rossello, Christian M Nefzger, Julien M D Legrand, Mia De Seram, Jose M Polo, Robin M Hobbs. Nat Commun 2018
39
28

Functional hierarchy and reversibility within the murine spermatogenic stem cell compartment.
Toshinori Nakagawa, Manju Sharma, Yo-ichi Nabeshima, Robert E Braun, Shosei Yoshida. Science 2010
327
11

Spermatogonial stem cells and spermatogenesis in mice, monkeys and men.
Adetunji P Fayomi, Kyle E Orwig. Stem Cell Res 2018
118
11


Essential role of Plzf in maintenance of spermatogonial stem cells.
José A Costoya, Robin M Hobbs, Maria Barna, Giorgio Cattoretti, Katia Manova, Meena Sukhwani, Kyle E Orwig, Debra J Wolgemuth, Pier Paolo Pandolfi. Nat Genet 2004
685
10


Cellular source and mechanisms of high transcriptome complexity in the mammalian testis.
Magali Soumillon, Anamaria Necsulea, Manuela Weier, David Brawand, Xiaolan Zhang, Hongcang Gu, Pauline Barthès, Maria Kokkinaki, Serge Nef, Andreas Gnirke,[...]. Cell Rep 2013
316
10

Spermatogenesis following male germ-cell transplantation.
R L Brinster, J W Zimmermann. Proc Natl Acad Sci U S A 1994
10

Plzf is required in adult male germ cells for stem cell self-renewal.
F William Buaas, Andrew L Kirsh, Manju Sharma, Derek J McLean, Jamie L Morris, Michael D Griswold, Dirk G de Rooij, Robert E Braun. Nat Genet 2004
636
9


Unified single-cell analysis of testis gene regulation and pathology in five mouse strains.
Min Jung, Daniel Wells, Jannette Rusch, Suhaira Ahmad, Jonathan Marchini, Simon R Myers, Donald F Conrad. Elife 2019
45
20

Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions.
Li Li, Ji Dong, Liying Yan, Jun Yong, Xixi Liu, Yuqiong Hu, Xiaoying Fan, Xinglong Wu, Hongshan Guo, Xiaoye Wang,[...]. Cell Stem Cell 2017
174
9


Single-cell RNA sequencing of adult mouse testes.
Soeren Lukassen, Elisabeth Bosch, Arif B Ekici, Andreas Winterpacht. Sci Data 2018
21
38

Revealing cellular and molecular transitions in neonatal germ cell differentiation using single cell RNA sequencing.
Jinyue Liao, Shuk Han Ng, Alfred Chun Luk, Hoi Ching Suen, Yan Qian, Annie Wing Tung Lee, Jiajie Tu, Jacqueline Chak Lam Fung, Nelson Leung Sang Tang, Bo Feng,[...]. Development 2019
16
50

Plzf regulates germline progenitor self-renewal by opposing mTORC1.
Robin M Hobbs, Marco Seandel, Ilaria Falciatori, Shahin Rafii, Pier Paolo Pandolfi. Cell 2010
176
8

Foxo1 is required in mouse spermatogonial stem cells for their maintenance and the initiation of spermatogenesis.
Meredith J Goertz, Zhuoru Wu, Teresa D Gallardo, F Kent Hamra, Diego H Castrillon. J Clin Invest 2011
163
8

Stra8 and its inducer, retinoic acid, regulate meiotic initiation in both spermatogenesis and oogenesis in mice.
Ericka L Anderson, Andrew E Baltus, Hermien L Roepers-Gajadien, Terry J Hassold, Dirk G de Rooij, Ans M M van Pelt, David C Page. Proc Natl Acad Sci U S A 2008
391
8



STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
8

What has single-cell RNA-seq taught us about mammalian spermatogenesis?
Shinnosuke Suzuki, Victoria D Diaz, Brian P Hermann. Biol Reprod 2019
21
38

Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.
Kathryn J Grive, Yang Hu, Eileen Shu, Andrew Grimson, Olivier Elemento, Jennifer K Grenier, Paula E Cohen. PLoS Genet 2019
43
18

Germline transmission of donor haplotype following spermatogonial transplantation.
R L Brinster, M R Avarbock. Proc Natl Acad Sci U S A 1994
772
8

Long-term proliferation in culture and germline transmission of mouse male germline stem cells.
Mito Kanatsu-Shinohara, Narumi Ogonuki, Kimiko Inoue, Hiromi Miki, Atsuo Ogura, Shinya Toyokuni, Takashi Shinohara. Biol Reprod 2003
696
8

Mouse spermatogenic stem cells continually interconvert between equipotent singly isolated and syncytial states.
Kenshiro Hara, Toshinori Nakagawa, Hideki Enomoto, Mikiko Suzuki, Masayuki Yamamoto, Benjamin D Simons, Shosei Yoshida. Cell Stem Cell 2014
165
8

Spermatogenesis: The Commitment to Meiosis.
Michael D Griswold. Physiol Rev 2016
292
8

Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
7

PAX7 expression defines germline stem cells in the adult testis.
Gina M Aloisio, Yuji Nakada, Hatice D Saatcioglu, Christopher G Peña, Michael D Baker, Edward D Tarnawa, Jishnu Mukherjee, Hema Manjunath, Abhijit Bugde, Anita L Sengupta,[...]. J Clin Invest 2014
99
7

Differential RA responsiveness directs formation of functionally distinct spermatogonial populations at the initiation of spermatogenesis in the mouse.
Ellen K Velte, Bryan A Niedenberger, Nicholas D Serra, Anukriti Singh, Lorena Roa-DeLaCruz, Brian P Hermann, Christopher B Geyer. Development 2019
21
33


Germline Stem Cell Activity Is Sustained by SALL4-Dependent Silencing of Distinct Tumor Suppressor Genes.
Ai-Leen Chan, Hue M La, Julien M D Legrand, Juho-Antti Mäkelä, Michael Eichenlaub, Mia De Seram, Mirana Ramialison, Robin M Hobbs. Stem Cell Reports 2017
31
22

MEIOSIN Directs the Switch from Mitosis to Meiosis in Mammalian Germ Cells.
Kei-Ichiro Ishiguro, Kumi Matsuura, Naoki Tani, Naoki Takeda, Shingo Usuki, Mariko Yamane, Michihiko Sugimoto, Sayoko Fujimura, Mihoko Hosokawa, Shinichiro Chuma,[...]. Dev Cell 2020
48
14

Periodic retinoic acid-STRA8 signaling intersects with periodic germ-cell competencies to regulate spermatogenesis.
Tsutomu Endo, Katherine A Romer, Ericka L Anderson, Andrew E Baltus, Dirk G de Rooij, David C Page. Proc Natl Acad Sci U S A 2015
107
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.