A citation-based method for searching scientific literature

Samie R Jaffrey, Miles F Wilkinson. Nat Rev Neurosci 2018
Times Cited: 42







List of co-cited articles
419 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Joshua T Mendell, Neda A Sharifi, Jennifer L Meyers, Francisco Martinez-Murillo, Harry C Dietz. Nat Genet 2004
585
35

Quality and quantity control of gene expression by nonsense-mediated mRNA decay.
Tatsuaki Kurosaki, Maximilian W Popp, Lynne E Maquat. Nat Rev Mol Cell Biol 2019
170
30

Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.
Søren Lykke-Andersen, Torben Heick Jensen. Nat Rev Mol Cell Biol 2015
362
26

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.
Jessica A Hurt, Alex D Robertson, Christopher B Burge. Genome Res 2013
145
23

Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation.
Patrick S Tarpey, F Lucy Raymond, Lam S Nguyen, Jayson Rodriguez, Anna Hackett, Lucianne Vandeleur, Raffaella Smith, Cheryl Shoubridge, Sarah Edkins, Claire Stevens,[...]. Nat Genet 2007
166
23

A Upf3b-mutant mouse model with behavioral and neurogenesis defects.
L Huang, E Y Shum, S H Jones, C-H Lou, J Dumdie, H Kim, A J Roberts, L A Jolly, J L Espinoza, D M Skarbrevik,[...]. Mol Psychiatry 2018
24
41

The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay.
Eleen Y Shum, Samantha H Jones, Ada Shao, Jennifer Dumdie, Matthew D Krause, Wai-Kin Chan, Chih-Hong Lou, Josh L Espinoza, Hye-Won Song, Mimi H Phan,[...]. Cell 2016
72
21

An alternative branch of the nonsense-mediated decay pathway.
Wai-Kin Chan, Lulu Huang, Jayanthi P Gudikote, Yao-Fu Chang, J Saadi Imam, James A MacLean, Miles F Wilkinson. EMBO J 2007
152
21

NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements.
Joachim Weischenfeldt, Inge Damgaard, David Bryder, Kim Theilgaard-Mönch, Lina A Thoren, Finn Cilius Nielsen, Sten Eirik W Jacobsen, Claus Nerlov, Bo Torben Porse. Genes Dev 2008
181
21

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno. Genes Dev 2006
392
21

RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.
Lulu Huang, Chih-Hong Lou, Waikin Chan, Eleen Y Shum, Ada Shao, Erica Stone, Rachid Karam, Hye-Won Song, Miles F Wilkinson. Mol Cell 2011
127
21


Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways.
Martino Colombo, Evangelos D Karousis, Joël Bourquin, Rémy Bruggmann, Oliver Mühlemann. RNA 2017
66
19

EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.
Marc Bühler, Silvia Steiner, Fabio Mohn, Alexandra Paillusson, Oliver Mühlemann. Nat Struct Mol Biol 2006
175
19

Nonsense-mediated mRNA decay: inter-individual variability and human disease.
Lam Son Nguyen, Miles F Wilkinson, Jozef Gecz. Neurosci Biobehav Rev 2014
76
19

Transcriptome profiling of UPF3B/NMD-deficient lymphoblastoid cells from patients with various forms of intellectual disability.
L S Nguyen, L Jolly, C Shoubridge, W K Chan, L Huang, F Laumonnier, M Raynaud, A Hackett, M Field, J Rodriguez,[...]. Mol Psychiatry 2012
62
16

A UPF3-mediated regulatory switch that maintains RNA surveillance.
Wai-Kin Chan, Angela D Bhalla, Hervé Le Hir, Lam Son Nguyen, Lulu Huang, Jozef Gécz, Miles F Wilkinson. Nat Struct Mol Biol 2009
78
16

Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism.
F Laumonnier, C Shoubridge, C Antar, L S Nguyen, H Van Esch, T Kleefstra, S Briault, J P Fryns, B Hamel, J Chelly,[...]. Mol Psychiatry 2010
71
16

Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway.
Chih H Lou, Ada Shao, Eleen Y Shum, Josh L Espinoza, Lulu Huang, Rachid Karam, Miles F Wilkinson. Cell Rep 2014
85
16

The unfolded protein response is shaped by the NMD pathway.
Rachid Karam, Chih-Hong Lou, Heike Kroeger, Lulu Huang, Jonathan H Lin, Miles F Wilkinson. EMBO Rep 2015
65
16

Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability.
S M Medghalchi, P A Frischmeyer, J T Mendell, A G Kelly, A M Lawler, H C Dietz. Hum Mol Genet 2001
200
16

Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay.
Tangliang Li, Yue Shi, Pei Wang, Luis Miguel Guachalla, Baofa Sun, Tjard Joerss, Yu-Sheng Chen, Marco Groth, Anja Krueger, Matthias Platzer,[...]. EMBO J 2015
61
16

Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.
Hidenori Tani, Naoto Imamachi, Kazi Abdus Salam, Rena Mizutani, Kenichi Ijiri, Takuma Irie, Tetsushi Yada, Yutaka Suzuki, Nobuyoshi Akimitsu. RNA Biol 2012
98
16

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay.
Nadia Amrani, Robin Ganesan, Stephanie Kervestin, David A Mangus, Shubhendu Ghosh, Allan Jacobson. Nature 2004
347
16

Dual function of UPF3B in early and late translation termination.
Gabriele Neu-Yilik, Etienne Raimondeau, Boris Eliseev, Lahari Yeramala, Beate Amthor, Aurélien Deniaud, Karine Huard, Kathrin Kerschgens, Matthias W Hentze, Christiane Schaffitzel,[...]. EMBO J 2017
43
16

Nonsense-Mediated mRNA Decay Begins Where Translation Ends.
Evangelos D Karousis, Oliver Mühlemann. Cold Spring Harb Perspect Biol 2019
61
16

Nonsense-mediated mRNA Decay and Cancer.
Maximilian W Popp, Lynne E Maquat. Curr Opin Genet Dev 2018
52
14

Rules that govern UPF1 binding to mRNA 3' UTRs.
Tatsuaki Kurosaki, Lynne E Maquat. Proc Natl Acad Sci U S A 2013
74
14

Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders.
Lam S Nguyen, Hyung-Goo Kim, Jill A Rosenfeld, Yiping Shen, James F Gusella, Yves Lacassie, Lawrence C Layman, Lisa G Shaffer, Jozef Gécz. Hum Mol Genet 2013
73
14


Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay.
David R McIlwain, Qun Pan, Patrick T Reilly, Andrew J Elia, Susan McCracken, Andrew C Wakeham, Annick Itie-Youten, Benjamin J Blencowe, Tak W Mak. Proc Natl Acad Sci U S A 2010
115
14

Upf1 senses 3'UTR length to potentiate mRNA decay.
J Robert Hogg, Stephen P Goff. Cell 2010
209
14

Nonsense-Mediated RNA Decay Influences Human Embryonic Stem Cell Fate.
Chih-Hong Lou, Jennifer Dumdie, Alexandra Goetz, Eleen Y Shum, David Brafman, Xiaoyan Liao, Sergio Mora-Castilla, Madhuvanthi Ramaiah, Heidi Cook-Andersen, Louise Laurent,[...]. Stem Cell Reports 2016
38
15


Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.
Andrea B Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Zamudio Orozco, Oliver Mühlemann. PLoS Biol 2008
204
14

Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay.
Dilek Colak, Sheng-Jian Ji, Bo T Porse, Samie R Jaffrey. Cell 2013
124
14

Mechanism and regulation of the nonsense-mediated decay pathway.
Nele Hug, Dasa Longman, Javier F Cáceres. Nucleic Acids Res 2016
230
14

Beyond quality control: The role of nonsense-mediated mRNA decay (NMD) in regulating gene expression.
Sofia Nasif, Lara Contu, Oliver Mühlemann. Semin Cell Dev Biol 2018
61
14

Inhibition of Upf2-Dependent Nonsense-Mediated Decay Leads to Behavioral and Neurophysiological Abnormalities by Activating the Immune Response.
Jennifer L Johnson, Loredana Stoica, Yuwei Liu, Ping Jun Zhu, Abhisek Bhattacharya, Shelly A Buffington, Redwan Huq, N Tony Eissa, Ola Larsson, Bo T Porse,[...]. Neuron 2019
14
42

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
14

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
14

Nonsense-mediated mRNA decay in humans at a glance.
Tatsuaki Kurosaki, Lynne E Maquat. J Cell Sci 2016
184
11

Amelioration of toxicity in neuronal models of amyotrophic lateral sclerosis by hUPF1.
Sami J Barmada, Shulin Ju, Arpana Arjun, Anthony Batarse, Hilary C Archbold, Daniel Peisach, Xingli Li, Yuxi Zhang, Elizabeth M H Tank, Haiyan Qiu,[...]. Proc Natl Acad Sci U S A 2015
65
11

Degradation of Gadd45 mRNA by nonsense-mediated decay is essential for viability.
Jonathan O Nelson, Kristin A Moore, Alex Chapin, Julie Hollien, Mark M Metzstein. Elife 2016
34
14

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans.
Benjamin P Lewis, Richard E Green, Steven E Brenner. Proc Natl Acad Sci U S A 2003
702
11

Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations.
Isabel Peixeiro, Ângela Inácio, Cristina Barbosa, Ana Luísa Silva, Stephen A Liebhaber, Luísa Romão. Nucleic Acids Res 2012
59
11

Exome sequencing identifies UPF3B as the causative gene for a Chinese non-syndrome mental retardation pedigree.
X Xu, L Zhang, P Tong, G Xun, W Su, Z Xiong, T Zhu, Y Zheng, S Luo, Y Pan,[...]. Clin Genet 2013
25
20



A post-translational regulatory switch on UPF1 controls targeted mRNA degradation.
Tatsuaki Kurosaki, Wencheng Li, Mainul Hoque, Maximilian W-L Popp, Dmitri N Ermolenko, Bin Tian, Lynne E Maquat. Genes Dev 2014
95
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.