A citation-based method for searching scientific literature

DNA Break Repair in Plants and Its Application for Genome Engineering.
Carla Schmidt, Michael Pacher, Holger Puchta. Methods Mol Biol 2019
Times Cited: 20






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List of co-cited articles
165 articles co-cited >1



Times Cited
  Times     Co-cited
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A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
8097
12
60

The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution.
Holger Puchta. J Exp Bot 2005
342
10
50

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage.
Alexis C Komor, Yongjoo B Kim, Michael S Packer, John A Zuris, David R Liu. Nature 2016
2197
6
30

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.
Bernd Zetsche, Jonathan S Gootenberg, Omar O Abudayyeh, Ian M Slaymaker, Kira S Makarova, Patrick Essletzbichler, Sara E Volz, Julia Joung, John van der Oost, Aviv Regev,[...]. Cell 2015
2192
5
25

CRISPR/Cas-mediated gene targeting in plants: finally a turn for the better for homologous recombination.
Teng-Kuei Huang, Holger Puchta. Plant Cell Rep 2019
65
5
25

DNA damage and repair in plants - from models to crops.
Vasilissa Manova, Damian Gruszka. Front Plant Sci 2015
138
4
20

Genome-Scale Sequence Disruption Following Biolistic Transformation in Rice and Maize.
Jianing Liu, Natalie J Nannas, Fang-Fang Fu, Jinghua Shi, Brooke Aspinwall, Wayne A Parrott, R Kelly Dawe. Plant Cell 2019
55
4
20

Genome editing. The new frontier of genome engineering with CRISPR-Cas9.
Jennifer A Doudna, Emmanuelle Charpentier. Science 2014
3101
4
20

Efficient in planta gene targeting in tomato using geminiviral replicons and the CRISPR/Cas9 system.
Tal Dahan-Meir, Shdema Filler-Hayut, Cathy Melamed-Bessudo, Samuel Bocobza, Henryk Czosnek, Asaph Aharoni, Avraham A Levy. Plant J 2018
101
4
20

Agrobacterium T-DNA integration in somatic cells does not require the activity of DNA polymerase θ.
Ayako Nishizawa-Yokoi, Hiroaki Saika, Naho Hara, Lan-Ying Lee, Seiichi Toki, Stanton B Gelvin. New Phytol 2021
19
4
21

A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation.
Levi G Lowder, Dengwei Zhang, Nicholas J Baltes, Joseph W Paul, Xu Tang, Xuelian Zheng, Daniel F Voytas, Tzung-Fu Hsieh, Yong Zhang, Yiping Qi. Plant Physiol 2015
312
3
15

Towards CRISPR/Cas crops - bringing together genomics and genome editing.
Armin Scheben, Felix Wolter, Jacqueline Batley, Holger Puchta, David Edwards. New Phytol 2017
104
3
15

RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors.
Agnieszka Piatek, Zahir Ali, Hatoon Baazim, Lixin Li, Aala Abulfaraj, Sahar Al-Shareef, Mustapha Aouida, Magdy M Mahfouz. Plant Biotechnol J 2015
194
3
15

High-frequency, precise modification of the tomato genome.
Tomáš Čermák, Nicholas J Baltes, Radim Čegan, Yong Zhang, Daniel F Voytas. Genome Biol 2015
278
3
15

Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion.
Yuan Zong, Yanpeng Wang, Chao Li, Rui Zhang, Kunling Chen, Yidong Ran, Jin-Long Qiu, Daowen Wang, Caixia Gao. Nat Biotechnol 2017
398
3
15

Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice.
Huanbin Zhou, Bo Liu, Donald P Weeks, Martin H Spalding, Bing Yang. Nucleic Acids Res 2014
293
3
15

CRISPR-Cas9 Structures and Mechanisms.
Fuguo Jiang, Jennifer A Doudna. Annu Rev Biophys 2017
731
3
15

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes.
Zhen Liang, Kunling Chen, Tingdong Li, Yi Zhang, Yanpeng Wang, Qian Zhao, Jinxing Liu, Huawei Zhang, Cuimin Liu, Yidong Ran,[...]. Nat Commun 2017
379
3
15

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture.
Kunling Chen, Yanpeng Wang, Rui Zhang, Huawei Zhang, Caixia Gao. Annu Rev Plant Biol 2019
429
3
15

Gene Targeting by Homology-Directed Repair in Rice Using a Geminivirus-Based CRISPR/Cas9 System.
Mugui Wang, Yuming Lu, José Ramón Botella, Yanfei Mao, Kai Hua, Jian-Kang Zhu. Mol Plant 2017
107
3
15

Pea early-browning virus-mediated genome editing via the CRISPR/Cas9 system in Nicotiana benthamiana and Arabidopsis.
Zahir Ali, Ayman Eid, Shakila Ali, Magdy M Mahfouz. Virus Res 2018
54
3
15

Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair.
Natasa Savic, Femke Cas Ringnalda, Helen Lindsay, Christian Berk, Katja Bargsten, Yizhou Li, Dario Neri, Mark D Robinson, Constance Ciaudo, Jonathan Hall,[...]. Elife 2018
95
3
15

CRISPR/Cas9-Mediated Immunity to Geminiviruses: Differential Interference and Evasion.
Zahir Ali, Shakila Ali, Manal Tashkandi, Syed Shan-E-Ali Zaidi, Magdy M Mahfouz. Sci Rep 2016
117
3
15

Increasing Cas9-mediated homology-directed repair efficiency through covalent tethering of DNA repair template.
Eric J Aird, Klaus N Lovendahl, Amber St Martin, Reuben S Harris, Wendy R Gordon. Commun Biol 2018
131
3
15

Efficient Virus-Mediated Genome Editing in Plants Using the CRISPR/Cas9 System.
Zahir Ali, Aala Abul-faraj, Lixin Li, Neha Ghosh, Marek Piatek, Ali Mahjoub, Mustapha Aouida, Agnieszka Piatek, Nicholas J Baltes, Daniel F Voytas,[...]. Mol Plant 2015
162
3
15

CRISPR/Cas9-mediated viral interference in plants.
Zahir Ali, Aala Abulfaraj, Ali Idris, Shakila Ali, Manal Tashkandi, Magdy M Mahfouz. Genome Biol 2015
188
3
15

Engineering canker-resistant plants through CRISPR/Cas9-targeted editing of the susceptibility gene CsLOB1 promoter in citrus.
Aihong Peng, Shanchun Chen, Tiangang Lei, Lanzhen Xu, Yongrui He, Liu Wu, Lixiao Yao, Xiuping Zou. Plant Biotechnol J 2017
216
3
15

Search-and-replace genome editing without double-strand breaks or donor DNA.
Andrew V Anzalone, Peyton B Randolph, Jessie R Davis, Alexander A Sousa, Luke W Koblan, Jonathan M Levy, Peter J Chen, Christopher Wilson, Gregory A Newby, Aditya Raguram,[...]. Nature 2019
1357
3
15

Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing.
Daniel Rodríguez-Leal, Zachary H Lemmon, Jarrett Man, Madelaine E Bartlett, Zachary B Lippman. Cell 2017
400
3
15

De novo domestication of wild tomato using genome editing.
Agustin Zsögön, Tomáš Čermák, Emmanuel Rezende Naves, Marcela Morato Notini, Kai H Edel, Stefan Weinl, Luciano Freschi, Daniel F Voytas, Jörg Kudla, Lázaro Eustáquio Pereira Peres. Nat Biotechnol 2018
273
3
15

Targeted genome modification of crop plants using a CRISPR-Cas system.
Qiwei Shan, Yanpeng Wang, Jun Li, Yi Zhang, Kunling Chen, Zhen Liang, Kang Zhang, Jinxing Liu, Jianzhong Jeff Xi, Jin-Long Qiu,[...]. Nat Biotechnol 2013
947
3
15

Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence.
Michael A Gomez, Z Daniel Lin, Theodore Moll, Raj Deepika Chauhan, Luke Hayden, Kelley Renninger, Getu Beyene, Nigel J Taylor, James C Carrington, Brian J Staskawicz,[...]. Plant Biotechnol J 2019
113
3
15

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA.
Yi Zhang, Zhen Liang, Yuan Zong, Yanpeng Wang, Jinxing Liu, Kunling Chen, Jin-Long Qiu, Caixia Gao. Nat Commun 2016
390
3
15

Development of broad virus resistance in non-transgenic cucumber using CRISPR/Cas9 technology.
Jeyabharathy Chandrasekaran, Marina Brumin, Dalia Wolf, Diana Leibman, Chen Klap, Mali Pearlsman, Amir Sherman, Tzahi Arazi, Amit Gal-On. Mol Plant Pathol 2016
286
3
15

Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses.
Devang Mehta, Alessandra Stürchler, Ravi B Anjanappa, Syed Shan-E-Ali Zaidi, Matthias Hirsch-Hoffmann, Wilhelm Gruissem, Hervé Vanderschuren. Genome Biol 2019
63
3
15

DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins.
Je Wook Woo, Jungeun Kim, Soon Il Kwon, Claudia Corvalán, Seung Woo Cho, Hyeran Kim, Sang-Gyu Kim, Sang-Tae Kim, Sunghwa Choe, Jin-Soo Kim. Nat Biotechnol 2015
517
3
15

A Multipurpose Toolkit to Enable Advanced Genome Engineering in Plants.
Tomáš Čermák, Shaun J Curtin, Javier Gil-Humanes, Radim Čegan, Thomas J Y Kono, Eva Konečná, Joseph J Belanto, Colby G Starker, Jade W Mathre, Rebecca L Greenstein,[...]. Plant Cell 2017
268
3
15

In planta gene targeting.
Friedrich Fauser, Nadine Roth, Michael Pacher, Gabriele Ilg, Rocío Sánchez-Fernández, Christian Biesgen, Holger Puchta. Proc Natl Acad Sci U S A 2012
127
3
15

T-DNA integration in plants results from polymerase-θ-mediated DNA repair.
Maartje van Kregten, Sylvia de Pater, Ron Romeijn, Robin van Schendel, Paul J J Hooykaas, Marcel Tijsterman. Nat Plants 2016
87
3
15

Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana.
Friedrich Fauser, Simon Schiml, Holger Puchta. Plant J 2014
416
3
15

Applications of CRISPR-Cas in agriculture and plant biotechnology.
Haocheng Zhu, Chao Li, Caixia Gao. Nat Rev Mol Cell Biol 2020
188
3
15

Geminivirus-Mediated Genome Editing in Potato (Solanum tuberosum L.) Using Sequence-Specific Nucleases.
Nathaniel M Butler, Nicholas J Baltes, Daniel F Voytas, David S Douches. Front Plant Sci 2016
122
3
15

Fusion of the Cas9 endonuclease and the VirD2 relaxase facilitates homology-directed repair for precise genome engineering in rice.
Zahir Ali, Ashwag Shami, Khalid Sedeek, Radwa Kamel, Abdulrahman Alhabsi, Muhammad Tehseen, Norhan Hassan, Haroon Butt, Ahad Kababji, Samir M Hamdan,[...]. Commun Biol 2020
43
3
15

Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.
Nicole M Gaudelli, Alexis C Komor, Holly A Rees, Michael S Packer, Ahmed H Badran, David I Bryson, David R Liu. Nature 2017
1604
3
15

Repairing breaks in the plant genome: the importance of keeping it together.
Wanda M Waterworth, Georgina E Drury, Clifford M Bray, Christopher E West. New Phytol 2011
108
2
10

Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion.
Zenpei Shimatani, Sachiko Kashojiya, Mariko Takayama, Rie Terada, Takayuki Arazoe, Hisaki Ishii, Hiroshi Teramura, Tsuyoshi Yamamoto, Hiroki Komatsu, Kenji Miura,[...]. Nat Biotechnol 2017
349
2
10

Precise A·T to G·C Base Editing in the Rice Genome.
Kai Hua, Xiaoping Tao, Fengtong Yuan, Dong Wang, Jian-Kang Zhu. Mol Plant 2018
113
2
10

A potent Cas9-derived gene activator for plant and mammalian cells.
Zhenxiang Li, Dandan Zhang, Xiangyu Xiong, Bingyu Yan, Wei Xie, Jen Sheen, Jian-Feng Li. Nat Plants 2017
105
2
10

The Biology of CRISPR-Cas: Backward and Forward.
Frank Hille, Hagen Richter, Shi Pey Wong, Majda Bratovič, Sarah Ressel, Emmanuelle Charpentier. Cell 2018
386
2
10

Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System.
Yuming Lu, Xiao Ye, Renming Guo, Jing Huang, Wei Wang, Jiuyou Tang, Longtao Tan, Jian-Kang Zhu, Chengcai Chu, Yangwen Qian. Mol Plant 2017
133
2
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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