A citation-based method for searching scientific literature

Elijah K Lowe, Anders L Garm, Esther Ullrich-Lüter, Claudia Cuomo, Maria I Arnone. BMC Evol Biol 2018
Times Cited: 6







List of co-cited articles
20 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Opsin evolution in the Ambulacraria.
S D'Aniello, J Delroisse, A Valero-Gracia, E K Lowe, M Byrne, J T Cannon, K M Halanych, M R Elphick, J Mallefet, S Kaul-Strehlow,[...]. Mar Genomics 2015
22
50

The opsins.
Akihisa Terakita. Genome Biol 2005
334
50

A novel Go-mediated phototransduction cascade in scallop visual cells.
D Kojima, A Terakita, T Ishikawa, Y Tsukahara, A Maeda, Y Shichida. J Biol Chem 1997
100
33

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
Salvador Capella-Gutiérrez, José M Silla-Martínez, Toni Gabaldón. Bioinformatics 2009
33

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
33

Unconventional Roles of Opsins.
Nicole Y Leung, Craig Montell. Annu Rev Cell Dev Biol 2017
57
33

UFBoot2: Improving the Ultrafast Bootstrap Approximation.
Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler, Bui Quang Minh, Le Sy Vinh. Mol Biol Evol 2018
33

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
67
33

The evolution of nervous system patterning: insights from sea urchin development.
Lynne M Angerer, Shunsuke Yaguchi, Robert C Angerer, Robert D Burke. Development 2011
77
33




Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
161
33

Evolution of nitric oxide regulation of gut function.
Junko Yaguchi, Shunsuke Yaguchi. Proc Natl Acad Sci U S A 2019
8
33


Cooperative Wnt-Nodal Signals Regulate the Patterning of Anterior Neuroectoderm.
Junko Yaguchi, Noriyo Takeda, Kazuo Inaba, Shunsuke Yaguchi. PLoS Genet 2016
25
33

A genomic view of the sea urchin nervous system.
R D Burke, L M Angerer, M R Elphick, G W Humphrey, S Yaguchi, T Kiyama, S Liang, X Mu, C Agca, W H Klein,[...]. Dev Biol 2006
195
33

The genome of the sea urchin Strongylocentrotus purpuratus.
Erica Sodergren, George M Weinstock, Eric H Davidson, R Andrew Cameron, Richard A Gibbs, Robert C Angerer, Lynne M Angerer, Maria Ina Arnone, David R Burgess, Robert D Burke,[...]. Science 2006
764
33

The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center.
Zheng Wei, Junko Yaguchi, Shunsuke Yaguchi, Robert C Angerer, Lynne M Angerer. Development 2009
79
33

The ecoresponsive genome of Daphnia pulex.
John K Colbourne, Michael E Pfrender, Donald Gilbert, W Kelley Thomas, Abraham Tucker, Todd H Oakley, Shinichi Tokishita, Andrea Aerts, Georg J Arnold, Malay Kumar Basu,[...]. Science 2011
791
33

High opsin diversity in a non-visual infaunal brittle star.
Jérôme Delroisse, Esther Ullrich-Lüter, Olga Ortega-Martinez, Sam Dupont, Maria-Ina Arnone, Jérôme Mallefet, Patrick Flammang. BMC Genomics 2014
16
16


IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
16

Calcitic microlenses as part of the photoreceptor system in brittlestars.
J Aizenberg, A Tkachenko, S Weiner, L Addadi, G Hendler. Nature 2001
224
16


C-opsin expressing photoreceptors in echinoderms.
Esther M Ullrich-Lüter, Salvatore D'Aniello, Maria I Arnone. Integr Comp Biol 2013
18
16

Advanced optics in a jellyfish eye.
Dan-E Nilsson, Lars Gislén, Melissa M Coates, Charlotta Skogh, Anders Garm. Nature 2005
114
16

Reversible polymorphism-aware phylogenetic models and their application to tree inference.
Dominik Schrempf, Bui Quang Minh, Nicola De Maio, Arndt von Haeseler, Carolin Kosiol. J Theor Biol 2016
35
16


Active control of the visual field in the starfish Acanthaster planci.
S Beer, C Wentzel, R Petie, A Garm. Vision Res 2016
7
16

Reconstructing the eyes of Urbilateria.
D Arendt, J Wittbrodt. Philos Trans R Soc Lond B Biol Sci 2001
108
16

Phototaxis and the origin of visual eyes.
Nadine Randel, Gáspár Jékely. Philos Trans R Soc Lond B Biol Sci 2016
28
16

Phylogenomics, life history and morphological evolution of ophiocomid brittlestars.
Timothy D O'Hara, Andrew F Hugall, Paula A Cisternas, Emilie Boissin, Guadalupe Bribiesca-Contreras, Javier Sellanes, Gustav Paulay, Maria Byrne. Mol Phylogenet Evol 2019
8
16

Unique system of photoreceptors in sea urchin tube feet.
Esther M Ullrich-Lüter, Sam Dupont, Enrique Arboleda, Harald Hausen, Maria Ina Arnone. Proc Natl Acad Sci U S A 2011
62
16

Restructuring higher taxonomy using broad-scale phylogenomics: The living Ophiuroidea.
Timothy D O'Hara, Andrew F Hugall, Ben Thuy, Sabine Stöhr, Alexander V Martynov. Mol Phylogenet Evol 2017
42
16

Crown-of-thorns starfish have true image forming vision.
Ronald Petie, Anders Garm, Michael R Hall. Front Zool 2016
12
16

Ocular and extraocular expression of opsins in the rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa).
Jan Bielecki, Alexander K Zaharoff, Nicole Y Leung, Anders Garm, Todd H Oakley. PLoS One 2014
17
16

De Novo Adult Transcriptomes of Two European Brittle Stars: Spotlight on Opsin-Based Photoreception.
Jérôme Delroisse, Jérôme Mallefet, Patrick Flammang. PLoS One 2016
10
16

Eye evolution and its functional basis.
Dan-E Nilsson. Vis Neurosci 2013
97
16



Whole-body photoreceptor networks are independent of 'lenses' in brittle stars.
Lauren Sumner-Rooney, Imran A Rahman, Julia D Sigwart, Esther Ullrich-Lüter. Proc Biol Sci 2018
12
16

The sea urchin Diadema africanum uses low resolution vision to find shelter and deter enemies.
John D Kirwan, Michael J Bok, Jochen Smolka, James J Foster, José Carlos Hernández, Dan-Eric Nilsson. J Exp Biol 2018
17
16

Spatial vision in the echinoid genus Echinometra.
Erin Blevins, Sönke Johnsen. J Exp Biol 2004
34
16


Understanding the dermal light sense in the context of integrative photoreceptor cell biology.
M Desmond Ramirez, Daniel I Speiser, M Sabrina Pankey, Todd H Oakley. Vis Neurosci 2011
31
16


De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Brian J Haas, Alexie Papanicolaou, Moran Yassour, Manfred Grabherr, Philip D Blood, Joshua Bowden, Matthew Brian Couger, David Eccles, Bo Li, Matthias Lieber,[...]. Nat Protoc 2013
16

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
16



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.