A citation-based method for searching scientific literature

Ananda Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Dhurjhoti Saha, Pankaj Kumar, Tabish Hussain, Vivek Srivastava, Sumitabho Deb Roy, Jerry W Shay, Shantanu Chowdhury. PLoS Genet 2018
Times Cited: 24







List of co-cited articles
327 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex.
Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, Anirban Kar, Anand Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Parashar Dhapola, Basudeb Maji, Sreekanth Vedagopuram,[...]. Sci Rep 2017
26
37

Regulation of the Human Telomerase Gene TERT by Telomere Position Effect-Over Long Distances (TPE-OLD): Implications for Aging and Cancer.
Wanil Kim, Andrew T Ludlow, Jaewon Min, Jerome D Robin, Guido Stadler, Ilgen Mender, Tsung-Po Lai, Ning Zhang, Woodring E Wright, Jerry W Shay. PLoS Biol 2016
77
37

Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex-dependent fashion.
Dhurjhoti Saha, Ankita Singh, Tabish Hussain, Vivek Srivastava, Suman Sengupta, Anirban Kar, Parashar Dhapola, Vishnu Dhople, Ramesh Ummanni, Shantanu Chowdhury. J Biol Chem 2017
27
33

TRF2 and lamin A/C interact to facilitate the functional organization of chromosome ends.
Ashley M Wood, Jannie M Rendtlew Danielsen, Catherine A Lucas, Ellen L Rice, David Scalzo, Takeshi Shimi, Robert D Goldman, Erica D Smith, Michelle M Le Beau, Steven T Kosak. Nat Commun 2014
76
33

Telomere position effect: regulation of gene expression with progressive telomere shortening over long distances.
Jérôme D Robin, Andrew T Ludlow, Kimberly Batten, Frédérique Magdinier, Guido Stadler, Kathyrin R Wagner, Jerry W Shay, Woodring E Wright. Genes Dev 2014
143
33

The human TTAGGG repeat factors 1 and 2 bind to a subset of interstitial telomeric sequences and satellite repeats.
Thomas Simonet, Laure-Emmanuelle Zaragosi, Claude Philippe, Kevin Lebrigand, Clémentine Schouteden, Adeline Augereau, Serge Bauwens, Jing Ye, Marco Santagostino, Elena Giulotto,[...]. Cell Res 2011
90
33


The effect of the TRF2 N-terminal and TRFH regions on telomeric G-quadruplex structures.
Ilene M Pedroso, William Hayward, Terace M Fletcher. Nucleic Acids Res 2009
36
29

The Telomeric Protein TRF2 Regulates Angiogenesis by Binding and Activating the PDGFRβ Promoter.
Mounir El Maï, Kay-Dietrich Wagner, Jean-François Michiels, Damien Ambrosetti, Arnaud Borderie, Sandrine Destree, Valerie Renault, Nadir Djerbi, Marie-Josèphe Giraud-Panis, Eric Gilson,[...]. Cell Rep 2014
48
29

Telomere repeat-binding factor 2 binds extensively to extra-telomeric G-quadruplexes and regulates the epigenetic status of several gene promoters.
Ananda Kishore Mukherjee, Shalu Sharma, Sulochana Bagri, Rintu Kutum, Pankaj Kumar, Asgar Hussain, Prateek Singh, Dhurjhoti Saha, Anirban Kar, Debasis Dash,[...]. J Biol Chem 2019
10
70

Specific association of human telomerase activity with immortal cells and cancer.
N W Kim, M A Piatyszek, K R Prowse, C B Harley, M D West, P L Ho, G M Coviello, W E Wright, S L Weinrich, J W Shay. Science 1994
25

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.
Anjali Verma, Kangkan Halder, Rashi Halder, Vinod Kumar Yadav, Pooja Rawal, Ram Krishna Thakur, Farhan Mohd, Abhay Sharma, Shantanu Chowdhury. J Med Chem 2008
140
25

Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression.
Ram Krishna Thakur, Praveen Kumar, Kangkan Halder, Anjali Verma, Anirban Kar, Jean-Luc Parent, Richa Basundra, Akinchan Kumar, Shantanu Chowdhury. Nucleic Acids Res 2009
121
25

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
227
25

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription.
D E Gottschling, O M Aparicio, B L Billington, V A Zakian. Cell 1990
25

Telomere position effect in human cells.
J A Baur, Y Zou, J W Shay, W E Wright. Science 2001
320
25

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
25

Mammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sites.
Paula Martinez, Maria Thanasoula, Ana R Carlos, Gonzalo Gómez-López, Agueda M Tejera, Stefan Schoeftner, Orlando Dominguez, David G Pisano, Madalena Tarsounas, Maria A Blasco. Nat Cell Biol 2010
162
25

Telomeres and telomerase: three decades of progress.
Jerry W Shay, Woodring E Wright. Nat Rev Genet 2019
171
25

Local epigenetic reprogramming induced by G-quadruplex ligands.
Guillaume Guilbaud, Pierre Murat, Bénédicte Recolin, Beth C Campbell, Ahmed Maiter, Julian E Sale, Shankar Balasubramanian. Nat Chem 2017
47
20

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
20

QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes.
Vinod Kumar Yadav, James Kappukalayil Abraham, Prithvi Mani, Rashi Kulshrestha, Shantanu Chowdhury. Nucleic Acids Res 2008
98
20

TERT promoter mutations in familial and sporadic melanoma.
Susanne Horn, Adina Figl, P Sivaramakrishna Rachakonda, Christine Fischer, Antje Sucker, Andreas Gast, Stephanie Kadel, Iris Moll, Eduardo Nagore, Kari Hemminki,[...]. Science 2013
20

Highly recurrent TERT promoter mutations in human melanoma.
Franklin W Huang, Eran Hodis, Mary Jue Xu, Gregory V Kryukov, Lynda Chin, Levi A Garraway. Science 2013
20

SORBS2 transcription is activated by telomere position effect-over long distance upon telomere shortening in muscle cells from patients with facioscapulohumeral dystrophy.
Jérôme D Robin, Andrew T Ludlow, Kimberly Batten, Marie-Cécile Gaillard, Guido Stadler, Frédérique Magdinier, Woodring E Wright, Jerry W Shay. Genome Res 2015
46
20

Telomere length regulates ISG15 expression in human cells.
Zhenjun Lou, Jun Wei, Harold Riethman, Joseph A Baur, Regina Voglauer, Jerry W Shay, Woodring E Wright. Aging (Albany NY) 2009
56
20

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
20


TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
20

A DNA damage checkpoint response in telomere-initiated senescence.
Fabrizio d'Adda di Fagagna, Philip M Reaper, Lorena Clay-Farrace, Heike Fiegler, Philippa Carr, Thomas Von Zglinicki, Gabriele Saretzki, Nigel P Carter, Stephen P Jackson. Nature 2003
20

How shelterin protects mammalian telomeres.
Wilhelm Palm, Titia de Lange. Annu Rev Genet 2008
20

A survey of telomerase activity in human cancer.
J W Shay, S Bacchetti. Eur J Cancer 1997
20


Human telomeric proteins occupy selective interstitial sites.
Dong Yang, Yuanyan Xiong, Hyeung Kim, Quanyuan He, Yumei Li, Rui Chen, Zhou Songyang. Cell Res 2011
91
20

Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications.
Ananda Kishore Mukherjee, Shalu Sharma, Shantanu Chowdhury. Trends Genet 2019
35
20

Control of human telomere length by TRF1 and TRF2.
A Smogorzewska, B van Steensel, A Bianchi, S Oelmann, M R Schaefer, G Schnapp, T de Lange. Mol Cell Biol 2000
564
20

Extratelomeric Binding of the Telomere Binding Protein TRF2 at the PCGF3 Promoter Is G-Quadruplex Motif-Dependent.
Gunjan Purohit, Ananda Kishor Mukherjee, Shalu Sharma, Shantanu Chowdhury. Biochemistry 2018
6
66

Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.
Davide Schiavone, Guillaume Guilbaud, Pierre Murat, Charikleia Papadopoulou, Peter Sarkies, Marie-Noëlle Prioleau, Shankar Balasubramanian, Julian E Sale. EMBO J 2014
77
16

A Pharmacological Chaperone Molecule Induces Cancer Cell Death by Restoring Tertiary DNA Structures in Mutant hTERT Promoters.
Hyun-Jin Kang, Yunxi Cui, Holly Yin, Amy Scheid, William P D Hendricks, Jessica Schmidt, Aleksandar Sekulic, Deming Kong, Jeffrey M Trent, Vijay Gokhale,[...]. J Am Chem Soc 2016
48
16

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.
Rashi Halder, Kangkan Halder, Priyanka Sharma, Gaurav Garg, Shantanu Sengupta, Shantanu Chowdhury. Mol Biosyst 2010
49
16

Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
277
16

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
661
16

DNA G-quadruplexes show strong interaction with DNA methyltransferases in vitro.
Simone L Cree, Rayleen Fredericks, Allison Miller, F Grant Pearce, Vyacheslav Filichev, Conan Fee, Martin A Kennedy. FEBS Lett 2016
17
23

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
147
16

Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.
Anjali Verma, Vinod Kumar Yadav, Richa Basundra, Akinchan Kumar, Shantanu Chowdhury. Nucleic Acids Res 2009
93
16


In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei.
C Schaffitzel, I Berger, J Postberg, J Hanes, H J Lipps, A Plückthun. Proc Natl Acad Sci U S A 2001
444
16

QuadBase2: web server for multiplexed guanine quadruplex mining and visualization.
Parashar Dhapola, Shantanu Chowdhury. Nucleic Acids Res 2016
49
16

G-quadruplex structures: in vivo evidence and function.
Hans J Lipps, Daniela Rhodes. Trends Cell Biol 2009
528
16

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.