A citation-based method for searching scientific literature

Éva Hegedüs, Endre Kókai, Péter Nánási, László Imre, László Halász, Rozenn Jossé, Zsuzsa Antunovics, Martin R Webb, Aziz El Hage, Yves Pommier, Lóránt Székvölgyi, Viktor Dombrádi, Gábor Szabó. Nucleic Acids Res 2018
Times Cited: 3







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.
Ruth Stuckey, Néstor García-Rodríguez, Andrés Aguilera, Ralf Erik Wellinger. Proc Natl Acad Sci U S A 2015
63
33

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.
Jessica Zuin, Jesse R Dixon, Michael I J A van der Reijden, Zhen Ye, Petros Kolovos, Rutger W W Brouwer, Mariëtte P C van de Corput, Harmen J G van de Werken, Tobias A Knoch, Wilfred F J van IJcken,[...]. Proc Natl Acad Sci U S A 2014
471
33

DNA break mapping reveals topoisomerase II activity genome-wide.
Laura Baranello, Fedor Kouzine, Damian Wojtowicz, Kairong Cui, Teresa M Przytycka, Keji Zhao, David Levens. Int J Mol Sci 2014
46
33

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
279
33

Eukaryotic DNA Polymerases in Homologous Recombination.
Mitch McVey, Varandt Y Khodaverdian, Damon Meyer, Paula Gonçalves Cerqueira, Wolf-Dietrich Heyer. Annu Rev Genet 2016
67
33


RNase H enables efficient repair of R-loop induced DNA damage.
Jeremy D Amon, Douglas Koshland. Elife 2016
69
33

Genome Organization Drives Chromosome Fragility.
Andres Canela, Yaakov Maman, Seolkyoung Jung, Nancy Wong, Elsa Callen, Amanda Day, Kyong-Rim Kieffer-Kwon, Aleksandra Pekowska, Hongliang Zhang, Suhas S P Rao,[...]. Cell 2017
168
33

DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
96
33

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.
Jordi Barretina, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, Joseph Lehár, Gregory V Kryukov, Dmitriy Sonkin,[...]. Nature 2012
33

DHX9 helicase promotes R-loop formation in cells with impaired RNA splicing.
Prasun Chakraborty, Jeffrey T J Huang, Kevin Hiom. Nat Commun 2018
51
33

An ATR-dependent function for the Ddx19 RNA helicase in nuclear R-loop metabolism.
Dana Hodroj, Bénédicte Recolin, Kamar Serhal, Susan Martinez, Nikolay Tsanov, Raghida Abou Merhi, Domenico Maiorano. EMBO J 2017
64
33

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
279
33

Human three prime exonuclease TREX1 is induced by genotoxic stress and involved in protection of glioma and melanoma cells to anticancer drugs.
Maja T Tomicic, Dorthe Aasland, Teodora Nikolova, Bernd Kaina, Markus Christmann. Biochim Biophys Acta 2013
14
33



Ribonucleoprotein-masked nicks at 50-kbp intervals in the eukaryotic genomic DNA.
Lóránt Székvölgyi, Zsuzsa Rákosy, Bálint L Bálint, Endre Kókai, László Imre, György Vereb, Zsolt Bacsó, Katalin Goda, Sándor Varga, Margit Balázs,[...]. Proc Natl Acad Sci U S A 2007
16
33

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells.
Wanjuan Yang, Jorge Soares, Patricia Greninger, Elena J Edelman, Howard Lightfoot, Simon Forbes, Nidhi Bindal, Dave Beare, James A Smith, I Richard Thompson,[...]. Nucleic Acids Res 2013
896
33

Relevance of the Fanconi anemia pathway in the response of human cells to trabectedin.
José A Casado, Paula Río, Esther Marco, Verónica García-Hernández, Alberto Domingo, Laura Pérez, Juan Carlos Tercero, Juan José Vaquero, Beatriz Albella, Federico Gago,[...]. Mol Cancer Ther 2008
41
33

Genomics screen in transformed stem cells reveals RNASEH2A, PPAP2C, and ADARB1 as putative anticancer drug targets.
James M Flanagan, Juan M Funes, Stephen Henderson, Laurence Wild, Nessa Carey, Chris Boshoff. Mol Cancer Ther 2009
48
33

The yeast Pif1p DNA helicase preferentially unwinds RNA DNA substrates.
Jean-Baptiste Boulé, Virginia A Zakian. Nucleic Acids Res 2007
119
33

Trabectedin as a chemotherapy option for patients with BRCA deficiency.
Bradley J Monk, Domenica Lorusso, Antoine Italiano, Stan B Kaye, Miguel Aracil, Adnan Tanović, Maurizio D'Incalci. Cancer Treat Rev 2016
28
33

Senataxin: Genome Guardian at the Interface of Transcription and Neurodegeneration.
Matthias Groh, Laura Oana Albulescu, Agnese Cristini, Natalia Gromak. J Mol Biol 2017
63
33

Arginine methylation facilitates the recruitment of TOP3B to chromatin to prevent R loop accumulation.
Yanzhong Yang, Kevin M McBride, Sean Hensley, Yue Lu, Frederic Chedin, Mark T Bedford. Mol Cell 2014
134
33

Increased global transcription activity as a mechanism of replication stress in cancer.
Panagiotis Kotsantis, Lara Marques Silva, Sarah Irmscher, Rebecca M Jones, Lisa Folkes, Natalia Gromak, Eva Petermann. Nat Commun 2016
133
33

Identification of small-molecule inhibitors of the ribonuclease H2 enzyme.
Rachel White, Barbara Saxty, Jonathan Large, Catherine A Kettleborough, Andrew P Jackson. J Biomol Screen 2013
5
33

Identification of a CARM1 Inhibitor with Potent In Vitro and In Vivo Activity in Preclinical Models of Multiple Myeloma.
Allison E Drew, Oscar Moradei, Suzanne L Jacques, Nathalie Rioux, Ann P Boriack-Sjodin, Christina Allain, Margaret Porter Scott, Lei Jin, Alejandra Raimondi, Jessica L Handler,[...]. Sci Rep 2017
38
33

Two RNase H2 Mutants with Differential rNMP Processing Activity Reveal a Threshold of Ribonucleotide Tolerance for Embryonic Development.
Ryo Uehara, Susana M Cerritelli, Naushaba Hasin, Kiran Sakhuja, Mariya London, Jaime Iranzo, Hyongi Chon, Alexander Grinberg, Robert J Crouch. Cell Rep 2018
20
33



R-loop formation at Snord116 mediates topotecan inhibition of Ube3a-antisense and allele-specific chromatin decondensation.
Weston T Powell, Rochelle L Coulson, Michael L Gonzales, Florence K Crary, Spencer S Wong, Sarrita Adams, Robert A Ach, Peter Tsang, Nazumi Alice Yamada, Dag H Yasui,[...]. Proc Natl Acad Sci U S A 2013
94
33

A Case for Data Commons: Toward Data Science as a Service.
Robert L Grossman, Allison Heath, Mark Murphy, Maria Patterson, Walt Wells. Comput Sci Eng 2016
19
33

Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome.
Dilek Colak, Nikica Zaninovic, Michael S Cohen, Zev Rosenwaks, Wang-Yong Yang, Jeannine Gerhardt, Matthew D Disney, Samie R Jaffrey. Science 2014
186
33


Splicing function of mitotic regulators links R-loop-mediated DNA damage to tumor cell killing.
Yihan Wan, Xiaobin Zheng, Haiyang Chen, Yuxuan Guo, Hao Jiang, Xiaonan He, Xueliang Zhu, Yixian Zheng. J Cell Biol 2015
31
33

RECQ-like helicases Sgs1 and BLM regulate R-loop-associated genome instability.
Emily Yun-Chia Chang, Carolina A Novoa, Maria J Aristizabal, Yan Coulombe, Romulo Segovia, Richa Chaturvedi, Yaoqing Shen, Christelle Keong, Annie S Tam, Steven J M Jones,[...]. J Cell Biol 2017
52
33

Spliceosomal components protect embryonic neurons from R-loop-mediated DNA damage and apoptosis.
Shelly Sorrells, Sara Nik, Mattie J Casey, Rosannah C Cameron, Harold Truong, Cristhian Toruno, Michelle Gulfo, Albert Lowe, Cicely Jette, Rodney A Stewart,[...]. Dis Model Mech 2018
13
33

Recognition of the unique structure of DNA:RNA hybrids.
Nicholas N Shaw, Dev P Arya. Biochimie 2008
72
33

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
Belén Gómez-González, María García-Rubio, Rodrigo Bermejo, Hélène Gaillard, Katsuhiko Shirahige, Antonio Marín, Marco Foiani, Andrés Aguilera. EMBO J 2011
145
33

The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
160
33

RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases.
László Halász, Zsolt Karányi, Beáta Boros-Oláh, Tímea Kuik-Rózsa, Éva Sipos, Éva Nagy, Ágnes Mosolygó-L, Anett Mázló, Éva Rajnavölgyi, Gábor Halmos,[...]. Genome Res 2017
43
33

The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations.
Liang Chen, Jia-Yu Chen, Yi-Jou Huang, Ying Gu, Jinsong Qiu, Hao Qian, Changwei Shao, Xuan Zhang, Jing Hu, Hairi Li,[...]. Mol Cell 2018
104
33

Selective degradation of splicing factor CAPERα by anticancer sulfonamides.
Taisuke Uehara, Yukinori Minoshima, Koji Sagane, Naoko Hata Sugi, Kaoru Ogawa Mitsuhashi, Noboru Yamamoto, Hiroshi Kamiyama, Kentaro Takahashi, Yoshihiko Kotake, Mai Uesugi,[...]. Nat Chem Biol 2017
156
33

Binding of FANCI-FANCD2 Complex to RNA and R-Loops Stimulates Robust FANCD2 Monoubiquitination.
Zhuobin Liang, Fengshan Liang, Yaqun Teng, Xiaoyong Chen, Jingchun Liu, Simonne Longerich, Timsi Rao, Allison M Green, Natalie B Collins, Yong Xiong,[...]. Cell Rep 2019
26
33

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
33

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
286
33

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
33

Senataxin plays an essential role with DNA damage response proteins in meiotic recombination and gene silencing.
Olivier J Becherel, Abrey J Yeo, Alissa Stellati, Evelyn Y H Heng, John Luff, Amila M Suraweera, Rick Woods, Jean Fleming, Dianne Carrie, Kristine McKinney,[...]. PLoS Genet 2013
94
33

Intersection of calorie restriction and magnesium in the suppression of genome-destabilizing RNA-DNA hybrids.
Karan J Abraham, Janet N Y Chan, Jayesh S Salvi, Brandon Ho, Amanda Hall, Elva Vidya, Ru Guo, Samuel A Killackey, Nancy Liu, Jeffrey E Lee,[...]. Nucleic Acids Res 2016
20
33

RTEL1 dismantles T loops and counteracts telomeric G4-DNA to maintain telomere integrity.
Jean-Baptiste Vannier, Visnja Pavicic-Kaltenbrunner, Mark I R Petalcorin, Hao Ding, Simon J Boulton. Cell 2012
301
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.