A citation-based method for searching scientific literature

Ze Cheng, Christopher Frederick Mugler, Abdurrahman Keskin, Stefanie Hodapp, Leon Yen-Lee Chan, Karsten Weis, Philipp Mertins, Aviv Regev, Marko Jovanovic, Gloria Ann Brar. Mol Cell 2019
Times Cited: 47







List of co-cited articles
425 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ribosomopathies: There's strength in numbers.
Eric W Mills, Rachel Green. Science 2017
191
42

Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.
Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani,[...]. Cell 2018
161
40

Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.
Zhen Shi, Kotaro Fujii, Kyle M Kovary, Naomi R Genuth, Hannes L Röst, Mary N Teruel, Maria Barna. Mol Cell 2017
274
27


Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
19


Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.
Nadya Kondrashov, Aya Pusic, Craig R Stumpf, Kunihiko Shimizu, Andrew C Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna. Cell 2011
356
17


Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae.
Kristan K Steffen, Mark A McCormick, Kim M Pham, Vivian L MacKay, Joe R Delaney, Christopher J Murakami, Matt Kaeberlein, Brian K Kennedy. Genetics 2012
117
14

Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements.
Max B Ferretti, Homa Ghalei, Ethan A Ward, Elizabeth L Potts, Katrin Karbstein. Nat Struct Mol Biol 2017
59
14


Ribosomopathies: how a common root can cause a tree of pathologies.
Nadia Danilova, Hanna T Gazda. Dis Model Mech 2015
107
14

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
447
14

Rare ribosomopathies: insights into mechanisms of cancer.
Anna Aspesi, Steven R Ellis. Nat Rev Cancer 2019
43
16


The ribosomal protein Asc1/RACK1 is required for efficient translation of short mRNAs.
Mary K Thompson, Maria F Rojas-Duran, Paritosh Gangaramani, Wendy V Gilbert. Elife 2016
64
12

The role of human ribosomal proteins in the maturation of rRNA and ribosome production.
Sara Robledo, Rachel A Idol, Dan L Crimmins, Jack H Ladenson, Philip J Mason, Monica Bessler. RNA 2008
164
12

The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors.
Lionel Tafforeau, Christiane Zorbas, Jean-Louis Langhendries, Sahra-Taylor Mullineux, Vassiliki Stamatopoulou, Romain Mullier, Ludivine Wacheul, Denis L J Lafontaine. Mol Cell 2013
265
12

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
742
12

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
339
12

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12

Does functional specialization of ribosomes really exist?
Max B Ferretti, Katrin Karbstein. RNA 2019
48
12

Altered translation of GATA1 in Diamond-Blackfan anemia.
Leif S Ludwig, Hanna T Gazda, Jennifer C Eng, Stephen W Eichhorn, Prathapan Thiru, Roxanne Ghazvinian, Tracy I George, Jason R Gotlib, Alan H Beggs, Colin A Sieff,[...]. Nat Med 2014
174
12

Differential Stoichiometry among Core Ribosomal Proteins.
Nikolai Slavov, Stefan Semrau, Edoardo Airoldi, Bogdan Budnik, Alexander van Oudenaarden. Cell Rep 2015
107
10

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation.
Shifeng Xue, Siqi Tian, Kotaro Fujii, Wipapat Kladwang, Rhiju Das, Maria Barna. Nature 2015
185
10

Functional specificity among ribosomal proteins regulates gene expression.
Suzanne Komili, Natalie G Farny, Frederick P Roth, Pamela A Silver. Cell 2007
246
10


Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
508
10

Cancer Biogenesis in Ribosomopathies.
Sergey O Sulima, Kim R Kampen, Kim De Keersmaecker. Cells 2019
28
17


How common are extraribosomal functions of ribosomal proteins?
Jonathan R Warner, Kerri B McIntosh. Mol Cell 2009
461
10

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
10

Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis.
Richard Y Ebright, Sooncheol Lee, Ben S Wittner, Kira L Niederhoffer, Benjamin T Nicholson, Aditya Bardia, Samuel Truesdell, Devon F Wiley, Benjamin Wesley, Selena Li,[...]. Science 2020
75
10

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
247
10

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
8

Genomic expression programs in the response of yeast cells to environmental changes.
A P Gasch, P T Spellman, C M Kao, O Carmel-Harel, M B Eisen, G Storz, D Botstein, P O Brown. Mol Biol Cell 2000
8

Deletion of ribosomal protein genes is a common vulnerability in human cancer, especially in concert with TP53 mutations.
Ram Ajore, David Raiser, Marie McConkey, Magnus Jöud, Bernd Boidol, Brenton Mar, Gordon Saksena, David M Weinstock, Scott Armstrong, Steven R Ellis,[...]. EMBO Mol Med 2017
58
8

RACK1 controls IRES-mediated translation of viruses.
Karim Majzoub, Mohamed Lamine Hafirassou, Carine Meignin, Akira Goto, Stefano Marzi, Antonina Fedorova, Yann Verdier, Joëlle Vinh, Jules A Hoffmann, Franck Martin,[...]. Cell 2014
114
8

The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.
Deniz Simsek, Gerald C Tiu, Ryan A Flynn, Gun W Byeon, Kathrin Leppek, Adele F Xu, Howard Y Chang, Maria Barna. Cell 2017
188
8

Impaired ribosome biogenesis in Diamond-Blackfan anemia.
Valérie Choesmel, Daniel Bacqueville, Jacques Rouquette, Jacqueline Noaillac-Depeyre, Sébastien Fribourg, Aurore Crétien, Thierry Leblanc, Gil Tchernia, Lydie Da Costa, Pierre-Emmanuel Gleizes. Blood 2007
158
8

Eukaryotic Ribosome Assembly.
Jochen Baßler, Ed Hurt. Annu Rev Biochem 2019
119
8

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
191
8

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.
Bethany S Strunk, Megan N Novak, Crystal L Young, Katrin Karbstein. Cell 2012
178
8

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.
Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin, Anna M McGeachy, Jonathan S Weissman. Nat Protoc 2012
653
8

Transcriptome-wide measurement of translation by ribosome profiling.
Nicholas J McGlincy, Nicholas T Ingolia. Methods 2017
171
8

The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia.
N Draptchinskaia, P Gustavsson, B Andersson, M Pettersson, T N Willig, I Dianzani, S Ball, G Tchernia, J Klar, H Matsson,[...]. Nat Genet 1999
610
8

How Ribosomes Translate Cancer.
Sergey O Sulima, Isabel J F Hofman, Kim De Keersmaecker, Jonathan D Dinman. Cancer Discov 2017
84
8

Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4.
Kristan K Steffen, Vivian L MacKay, Emily O Kerr, Mitsuhiro Tsuchiya, Di Hu, Lindsay A Fox, Nick Dang, Elijah D Johnston, Jonathan A Oakes, Bie N Tchao,[...]. Cell 2008
319
8

Hallmarks of ribosomopathies.
Kim R Kampen, Sergey O Sulima, Stijn Vereecke, Kim De Keersmaecker. Nucleic Acids Res 2020
44
9

Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness.
Blake W Tye, Nicoletta Commins, Lillia V Ryazanova, Martin Wühr, Michael Springer, David Pincus, L Stirling Churchman. Elife 2019
40
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.