A citation-based method for searching scientific literature

Carsen Stringer, Marius Pachitariu. Curr Opin Neurobiol 2019
Times Cited: 17







List of co-cited articles
136 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
298
47

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
41

Inference of neuronal network spike dynamics and topology from calcium imaging data.
Henry Lütcke, Felipe Gerhard, Friedemann Zenke, Wulfram Gerstner, Fritjof Helmchen. Front Neural Circuits 2013
44
29

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
554
29

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
76
29

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
202
23

Analysis pipelines for calcium imaging data.
Eftychios A Pnevmatikakis. Curr Opin Neurobiol 2019
11
36

Comparative Evaluation of Genetically Encoded Voltage Indicators.
Yuki Bando, Masayuki Sakamoto, Samuel Kim, Inbal Ayzenshtat, Rafael Yuste. Cell Rep 2019
50
23

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
160
23

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
23

Spike inference from calcium imaging using sequential Monte Carlo methods.
Joshua T Vogelstein, Brendon O Watson, Adam M Packer, Rafael Yuste, Bruno Jedynak, Liam Paninski. Biophys J 2009
108
23

Robustness of Spike Deconvolution for Neuronal Calcium Imaging.
Marius Pachitariu, Carsen Stringer, Kenneth D Harris. J Neurosci 2018
40
23

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
96
23

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
64
23

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
203
17

Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics.
Masatoshi Inoue, Atsuya Takeuchi, Satoshi Manita, Shin-Ichiro Horigane, Masayuki Sakamoto, Ryosuke Kawakami, Kazushi Yamaguchi, Kouhei Otomo, Hiroyuki Yokoyama, Ryang Kim,[...]. Cell 2019
64
17

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
244
17

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
90
17

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
116
17

A shared neural ensemble links distinct contextual memories encoded close in time.
Denise J Cai, Daniel Aharoni, Tristan Shuman, Justin Shobe, Jeremy Biane, Weilin Song, Brandon Wei, Michael Veshkini, Mimi La-Vu, Jerry Lou,[...]. Nature 2016
308
17

Cellular level brain imaging in behaving mammals: an engineering approach.
Elizabeth J O Hamel, Benjamin F Grewe, Jones G Parker, Mark J Schnitzer. Neuron 2015
83
17

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
352
17

Chronic cellular imaging of entire cortical columns in awake mice using microprisms.
Mark L Andermann, Nathan B Gilfoy, Glenn J Goldey, Robert N S Sachdev, Markus Wölfel, David A McCormick, R Clay Reid, Michael J Levene. Neuron 2013
102
17

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
178
17

Video-rate volumetric functional imaging of the brain at synaptic resolution.
Rongwen Lu, Wenzhi Sun, Yajie Liang, Aaron Kerlin, Jens Bierfeld, Johannes D Seelig, Daniel E Wilson, Benjamin Scholl, Boaz Mohar, Masashi Tanimoto,[...]. Nat Neurosci 2017
89
17

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision.
Benjamin F Grewe, Dominik Langer, Hansjörg Kasper, Björn M Kampa, Fritjof Helmchen. Nat Methods 2010
267
17

Intermingled Ensembles in Visual Association Cortex Encode Stimulus Identity or Predicted Outcome.
Rohan N Ramesh, Christian R Burgess, Arthur U Sugden, Michael Gyetvan, Mark L Andermann. Neuron 2018
21
17

Functional organization and population dynamics in the mouse primary auditory cortex.
Gideon Rothschild, Israel Nelken, Adi Mizrahi. Nat Neurosci 2010
213
17

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
204
17

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick Mineault, Peter Rupprecht,[...]. PLoS Comput Biol 2018
32
17

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
322
17

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
698
17

In vivo two-photon calcium imaging of neuronal networks.
Christoph Stosiek, Olga Garaschuk, Knut Holthoff, Arthur Konnerth. Proc Natl Acad Sci U S A 2003
801
17

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
89
17

Astrocyte calcium signaling: the third wave.
Narges Bazargani, David Attwell. Nat Neurosci 2016
360
11

Circuit-specific signaling in astrocyte-neuron networks in basal ganglia pathways.
R Martín, R Bajo-Grañeras, R Moratalla, G Perea, A Araque. Science 2015
144
11

A Topological Representation of Branching Neuronal Morphologies.
Lida Kanari, Paweł Dłotko, Martina Scolamiero, Ran Levi, Julian Shillcock, Kathryn Hess, Henry Markram. Neuroinformatics 2018
22
11

Neuromodulatory Systems and Their Interactions: A Review of Models, Theories, and Experiments.
Michael C Avery, Jeffrey L Krichmar. Front Neural Circuits 2017
45
11

Action potential initiation and backpropagation in neurons of the mammalian CNS.
G Stuart, N Spruston, B Sakmann, M Häusser. Trends Neurosci 1997
501
11

Norepinephrine controls astroglial responsiveness to local circuit activity.
Martin Paukert, Amit Agarwal, Jaepyeong Cha, Van A Doze, Jin U Kang, Dwight E Bergles. Neuron 2014
255
11

In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat Methods 2017
146
11



Ca(2+) signaling in astrocytes from Ip3r2(-/-) mice in brain slices and during startle responses in vivo.
Rahul Srinivasan, Ben S Huang, Sharmila Venugopal, April D Johnston, Hua Chai, Hongkui Zeng, Peyman Golshani, Baljit S Khakh. Nat Neurosci 2015
225
11

Optogenetic astrocyte activation modulates response selectivity of visual cortex neurons in vivo.
Gertrudis Perea, Aimei Yang, Edward S Boyden, Mriganka Sur. Nat Commun 2014
120
11

Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data.
Daniel Soudry, Suraj Keshri, Patrick Stinson, Min-Hwan Oh, Garud Iyengar, Liam Paninski. PLoS Comput Biol 2015
18
11

Astrocytes control breathing through pH-dependent release of ATP.
Alexander V Gourine, Vitaliy Kasymov, Nephtali Marina, Feige Tang, Melina F Figueiredo, Samantha Lane, Anja G Teschemacher, K Michael Spyer, Karl Deisseroth, Sergey Kasparov. Science 2010
547
11


α1-Adrenergic receptors mediate coordinated Ca2+ signaling of cortical astrocytes in awake, behaving mice.
Fengfei Ding, John O'Donnell, Alexander S Thrane, Douglas Zeppenfeld, Hongyi Kang, Lulu Xie, Fushun Wang, Maiken Nedergaard. Cell Calcium 2013
195
11

Reconstruction and Simulation of Neocortical Microcircuitry.
Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever,[...]. Cell 2015
463
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.