A citation-based method for searching scientific literature

Lee Serpas, Rebecca W Y Chan, Peiyong Jiang, Meng Ni, Kun Sun, Ali Rashidfarrokhi, Chetna Soni, Vanja Sisirak, Wing-Shan Lee, Suk Hang Cheng, Wenlei Peng, K C Allen Chan, Rossa W K Chiu, Boris Reizis, Y M Dennis Lo. Proc Natl Acad Sci U S A 2019
Times Cited: 71







List of co-cited articles
779 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.
Matthew W Snyder, Martin Kircher, Andrew J Hill, Riza M Daza, Jay Shendure. Cell 2016
632
59

The Biology of Cell-free DNA Fragmentation and the Roles of DNASE1, DNASE1L3, and DFFB.
Diana S C Han, Meng Ni, Rebecca W Y Chan, Vicken W H Chan, Kathy O Lui, Rossa W K Chiu, Y M Dennis Lo. Am J Hum Genet 2020
54
62

Maternal plasma DNA sequencing reveals the genome-wide genetic and mutational profile of the fetus.
Y M Dennis Lo, K C Allen Chan, Hao Sun, Eric Z Chen, Peiyong Jiang, Fiona M F Lun, Yama W Zheng, Tak Y Leung, Tze K Lau, Charles R Cantor,[...]. Sci Transl Med 2010
629
43

Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin.
Kun Sun, Peiyong Jiang, Suk Hang Cheng, Timothy H T Cheng, John Wong, Vincent W S Wong, Simon S M Ng, Brigette B Y Ma, Tak Y Leung, Stephen L Chan,[...]. Genome Res 2019
86
38

Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients.
Peiyong Jiang, Carol W M Chan, K C Allen Chan, Suk Hang Cheng, John Wong, Vincent Wai-Sun Wong, Grace L H Wong, Stephen L Chan, Tony S K Mok, Henry L Y Chan,[...]. Proc Natl Acad Sci U S A 2015
369
36

Enhanced detection of circulating tumor DNA by fragment size analysis.
Florent Mouliere, Dineika Chandrananda, Anna M Piskorz, Elizabeth K Moore, James Morris, Lise Barlebo Ahlborn, Richard Mair, Teodora Goranova, Francesco Marass, Katrin Heider,[...]. Sci Transl Med 2018
361
36

Digestion of Chromatin in Apoptotic Cell Microparticles Prevents Autoimmunity.
Vanja Sisirak, Benjamin Sally, Vivette D'Agati, Wilnelly Martinez-Ortiz, Z Birsin Özçakar, Joseph David, Ali Rashidfarrokhi, Ada Yeste, Casandra Panea, Asiya Seema Chida,[...]. Cell 2016
204
35

Fragment Length of Circulating Tumor DNA.
Hunter R Underhill, Jacob O Kitzman, Sabine Hellwig, Noah C Welker, Riza Daza, Daniel N Baker, Keith M Gligorich, Robert C Rostomily, Mary P Bronner, Jay Shendure. PLoS Genet 2016
338
33

Genome-wide cell-free DNA fragmentation in patients with cancer.
Stephen Cristiano, Alessandro Leal, Jillian Phallen, Jacob Fiksel, Vilmos Adleff, Daniel C Bruhm, Sarah Østrup Jensen, Jamie E Medina, Carolyn Hruban, James R White,[...]. Nature 2019
344
33

Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments.
Kun Sun, Peiyong Jiang, K C Allen Chan, John Wong, Yvonne K Y Cheng, Raymond H S Liang, Wai-kong Chan, Edmond S K Ma, Stephen L Chan, Suk Hang Cheng,[...]. Proc Natl Acad Sci U S A 2015
361
32

Size-tagged preferred ends in maternal plasma DNA shed light on the production mechanism and show utility in noninvasive prenatal testing.
Kun Sun, Peiyong Jiang, Ada I C Wong, Yvonne K Y Cheng, Suk Hang Cheng, Haiqiang Zhang, K C Allen Chan, Tak Y Leung, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2018
71
30

Preferred end coordinates and somatic variants as signatures of circulating tumor DNA associated with hepatocellular carcinoma.
Peiyong Jiang, Kun Sun, Yu K Tong, Suk Hang Cheng, Timothy H T Cheng, Macy M S Heung, John Wong, Vincent W S Wong, Henry L Y Chan, K C Allen Chan,[...]. Proc Natl Acad Sci U S A 2018
78
30

DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.
S Jahr, H Hentze, S Englisch, D Hardt, F O Fackelmayer, R D Hesch, R Knippers. Cancer Res 2001
28

Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease.
Joshua Moss, Judith Magenheim, Daniel Neiman, Hai Zemmour, Netanel Loyfer, Amit Korach, Yaacov Samet, Myriam Maoz, Henrik Druid, Peter Arner,[...]. Nat Commun 2018
261
28

Plasma DNA End-Motif Profiling as a Fragmentomic Marker in Cancer, Pregnancy, and Transplantation.
Peiyong Jiang, Kun Sun, Wenlei Peng, Suk Hang Cheng, Meng Ni, Philip C Yeung, Macy M S Heung, Tingting Xie, Huimin Shang, Ze Zhou,[...]. Cancer Discov 2020
45
44

Loss-of-function variant in DNASE1L3 causes a familial form of systemic lupus erythematosus.
Sulaiman M Al-Mayouf, Asma Sunker, Reem Abdwani, Safiya Al Abrawi, Fathiya Almurshedi, Nadia Alhashmi, Abdullah Al Sonbul, Wafaa Sewairi, Aliya Qari, Eiman Abdallah,[...]. Nat Genet 2011
246
26

DNase1 Does Not Appear to Play a Major Role in the Fragmentation of Plasma DNA in a Knockout Mouse Model.
Timothy H T Cheng, Kathy O Lui, Xianlu Laura Peng, Suk Hang Cheng, Peiyong Jiang, K C Allen Chan, Rossa W K Chiu, Y M Dennis Lo. Clin Chem 2018
24
75

Inferring expressed genes by whole-genome sequencing of plasma DNA.
Peter Ulz, Gerhard G Thallinger, Martina Auer, Ricarda Graf, Karl Kashofer, Stephan W Jahn, Luca Abete, Gunda Pristauz, Edgar Petru, Jochen B Geigl,[...]. Nat Genet 2016
163
25

High-resolution characterization of sequence signatures due to non-random cleavage of cell-free DNA.
Dineika Chandrananda, Natalie P Thorne, Melanie Bahlo. BMC Med Genomics 2015
71
25

Liquid biopsies come of age: towards implementation of circulating tumour DNA.
Jonathan C M Wan, Charles Massie, Javier Garcia-Corbacho, Florent Mouliere, James D Brenton, Carlos Caldas, Simon Pacey, Richard Baird, Nitzan Rosenfeld. Nat Rev Cancer 2017
25

High fragmentation characterizes tumour-derived circulating DNA.
Florent Mouliere, Bruno Robert, Erika Arnau Peyrotte, Maguy Del Rio, Marc Ychou, Franck Molina, Celine Gongora, Alain R Thierry. PLoS One 2011
312
22

Presence of fetal DNA in maternal plasma and serum.
Y M Lo, N Corbetta, P F Chamberlain, V Rai, I L Sargent, C W Redman, J S Wainscoat. Lancet 1997
21

Origins, structures, and functions of circulating DNA in oncology.
A R Thierry, S El Messaoudi, P B Gahan, P Anker, M Stroun. Cancer Metastasis Rev 2016
359
21

Size distributions of maternal and fetal DNA in maternal plasma.
K C Allen Chan, Jun Zhang, Angela B Y Hui, Nathalie Wong, Tze K Lau, Tse N Leung, Kwok-Wai Lo, Dolly W S Huang, Y M Dennis Lo. Clin Chem 2004
395
21

Detection and characterization of jagged ends of double-stranded DNA in plasma.
Peiyong Jiang, Tingting Xie, Spencer C Ding, Ze Zhou, Suk Hang Cheng, Rebecca W Y Chan, Wing-Shan Lee, Wenlei Peng, John Wong, Vincent W S Wong,[...]. Genome Res 2020
30
50

Second generation noninvasive fetal genome analysis reveals de novo mutations, single-base parental inheritance, and preferred DNA ends.
K C Allen Chan, Peiyong Jiang, Kun Sun, Yvonne K Y Cheng, Yu K Tong, Suk Hang Cheng, Ada I C Wong, Irena Hudecova, Tak Y Leung, Rossa W K Chiu,[...]. Proc Natl Acad Sci U S A 2016
91
19

Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation.
Maxim Ivanov, Ancha Baranova, Timothy Butler, Paul Spellman, Vladislav Mileyko. BMC Genomics 2015
64
21

Size-based molecular diagnostics using plasma DNA for noninvasive prenatal testing.
Stephanie C Y Yu, K C Allen Chan, Yama W L Zheng, Peiyong Jiang, Gary J W Liao, Hao Sun, Ranjit Akolekar, Tak Y Leung, Attie T J I Go, John M G van Vugt,[...]. Proc Natl Acad Sci U S A 2014
177
18

Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
18

Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection.
Peter Ulz, Samantha Perakis, Qing Zhou, Tina Moser, Jelena Belic, Isaac Lazzeri, Albert Wölfler, Armin Zebisch, Armin Gerger, Gunda Pristauz,[...]. Nat Commun 2019
58
22

Host DNases prevent vascular occlusion by neutrophil extracellular traps.
Miguel Jiménez-Alcázar, Chandini Rangaswamy, Rachita Panda, Josephine Bitterling, Yashin J Simsek, Andy T Long, Rostyslav Bilyy, Veit Krenn, Christoph Renné, Thomas Renné,[...]. Science 2017
290
16

Murine serum nucleases--contrasting effects of plasmin and heparin on the activities of DNase1 and DNase1-like 3 (DNase1l3).
Markus Napirei, Sebastian Ludwig, Jamal Mezrhab, Thomas Klöckl, Hans G Mannherz. FEBS J 2009
82
16

Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.
Roy Straver, Cees B M Oudejans, Erik A Sistermans, Marcel J T Reinders. Prenat Diagn 2016
56
21

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing.
K C Allen Chan, Peiyong Jiang, Carol W M Chan, Kun Sun, John Wong, Edwin P Hui, Stephen L Chan, Wing Cheong Chan, David S C Hui, Simon S M Ng,[...]. Proc Natl Acad Sci U S A 2013
241
16

Current and future perspectives of liquid biopsies in genomics-driven oncology.
Ellen Heitzer, Imran S Haque, Charles E S Roberts, Michael R Speicher. Nat Rev Genet 2019
471
16

Plasma DNA Profile Associated with DNASE1L3 Gene Mutations: Clinical Observations, Relationships to Nuclease Substrate Preference, and In Vivo Correction.
Rebecca W Y Chan, Lee Serpas, Meng Ni, Stefano Volpi, Linda T Hiraki, Lai-Shan Tam, Ali Rashidfarrokhi, Priscilla C H Wong, Lydia H P Tam, Yueyang Wang,[...]. Am J Hum Genet 2020
15
80

Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: a transplantation model.
Yama W L Zheng, K C Allen Chan, Hao Sun, Peiyong Jiang, Xiaoxi Su, Eric Z Chen, Fiona M F Lun, Emily C W Hung, Vincent Lee, John Wong,[...]. Clin Chem 2012
84
15

Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasma.
Philip Burnham, Min Seong Kim, Sean Agbor-Enoh, Helen Luikart, Hannah A Valantine, Kiran K Khush, Iwijn De Vlaminck. Sci Rep 2016
101
15


Detection and quantification of mutations in the plasma of patients with colorectal tumors.
Frank Diehl, Meng Li, Devin Dressman, Yiping He, Dong Shen, Steve Szabo, Luis A Diaz, Steven N Goodman, Kerstin A David, Hartmut Juhl,[...]. Proc Natl Acad Sci U S A 2005
788
15

Identification of tissue-specific cell death using methylation patterns of circulating DNA.
Roni Lehmann-Werman, Daniel Neiman, Hai Zemmour, Joshua Moss, Judith Magenheim, Adi Vaknin-Dembinsky, Sten Rubertsson, Bengt Nellgård, Kaj Blennow, Henrik Zetterberg,[...]. Proc Natl Acad Sci U S A 2016
322
15

Normal and Cancerous Tissues Release Extrachromosomal Circular DNA (eccDNA) into the Circulation.
Pankaj Kumar, Laura W Dillon, Yoshiyuki Shibata, Amir A Jazaeri, David R Jones, Anindya Dutta. Mol Cancer Res 2017
85
15

Liquid biopsies: genotyping circulating tumor DNA.
Luis A Diaz, Alberto Bardelli. J Clin Oncol 2014
14

Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing.
Rebecca W Y Chan, Peiyong Jiang, Xianlu Peng, Lai-Shan Tam, Gary J W Liao, Edmund K M Li, Priscilla C H Wong, Hao Sun, K C Allen Chan, Rossa W K Chiu,[...]. Proc Natl Acad Sci U S A 2014
70
14

Quantifying circulating cell-free DNA in humans.
Romain Meddeb, Zahra Al Amir Dache, Simon Thezenas, Amaëlle Otandault, Rita Tanos, Brice Pastor, Cynthia Sanchez, Joelle Azzi, Geoffroy Tousch, Simon Azan,[...]. Sci Rep 2019
76
14

DNASE1L3 mutations in hypocomplementemic urticarial vasculitis syndrome.
Z Birsin Ozçakar, Joseph Foster, Oscar Diaz-Horta, Ozgur Kasapcopur, Yao-Shan Fan, Fatoş Yalçınkaya, Mustafa Tekin. Arthritis Rheum 2013
76
14

Detection and localization of surgically resectable cancers with a multi-analyte blood test.
Joshua D Cohen, Lu Li, Yuxuan Wang, Christopher Thoburn, Bahman Afsari, Ludmila Danilova, Christopher Douville, Ammar A Javed, Fay Wong, Austin Mattox,[...]. Science 2018
14

Noninvasive prenatal methylomic analysis by genomewide bisulfite sequencing of maternal plasma DNA.
Fiona M F Lun, Rossa W K Chiu, Kun Sun, Tak Y Leung, Peiyong Jiang, K C Allen Chan, Hao Sun, Y M Dennis Lo. Clin Chem 2013
97
14


Molecular characterization of cell-free eccDNAs in human plasma.
Jing Zhu, Fan Zhang, Meijun Du, Peng Zhang, Songbin Fu, Liang Wang. Sci Rep 2017
48
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.