A citation-based method for searching scientific literature

Minzhe Guo, Yina Du, Jason J Gokey, Samriddha Ray, Sheila M Bell, Mike Adam, Parvathi Sudha, Anne Karina Perl, Hitesh Deshmukh, S Steven Potter, Jeffrey A Whitsett, Yan Xu. Nat Commun 2019
Times Cited: 67







List of co-cited articles
815 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Development of the lung.
Johannes C Schittny. Cell Tissue Res 2017
187
20

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.
Jarod A Zepp, William J Zacharias, David B Frank, Christina A Cavanaugh, Su Zhou, Michael P Morley, Edward E Morrisey. Cell 2017
214
20

Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development.
Yina Du, Joseph A Kitzmiller, Anusha Sridharan, Anne K Perl, James P Bridges, Ravi S Misra, Gloria S Pryhuber, Thomas J Mariani, Soumyaroop Bhattacharya, Minzhe Guo,[...]. Thorax 2017
74
17

Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.
Joo-Hyeon Lee, Tuomas Tammela, Matan Hofree, Jinwook Choi, Nemanja Despot Marjanovic, Seungmin Han, David Canner, Katherine Wu, Margherita Paschini, Dong Ha Bhang,[...]. Cell 2017
166
17

Type 2 alveolar cells are stem cells in adult lung.
Christina E Barkauskas, Michael J Cronce, Craig R Rackley, Emily J Bowie, Douglas R Keene, Barry R Stripp, Scott H Randell, Paul W Noble, Brigid L M Hogan. J Clin Invest 2013
751
17

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.
Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey,[...]. JCI Insight 2016
257
16

Early lineage specification defines alveolar epithelial ontogeny in the murine lung.
David B Frank, Ian J Penkala, Jarod A Zepp, Aravind Sivakumar, Ricardo Linares-Saldana, William J Zacharias, Katharine G Stolz, Josh Pankin, MinQi Lu, Qiaohong Wang,[...]. Proc Natl Acad Sci U S A 2019
38
28

Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response.
Rongbo Li, Ksenija Bernau, Nathan Sandbo, Jing Gu, Sebastian Preissl, Xin Sun. Elife 2018
46
23

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.
Barbara Treutlein, Doug G Brownfield, Angela R Wu, Norma F Neff, Gary L Mantalas, F Hernan Espinoza, Tushar J Desai, Mark A Krasnow, Stephen R Quake. Nature 2014
752
16

Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function.
Brigid L M Hogan, Christina E Barkauskas, Harold A Chapman, Jonathan A Epstein, Rajan Jain, Connie C W Hsia, Laura Niklason, Elizabeth Calle, Andrew Le, Scott H Randell,[...]. Cell Stem Cell 2014
439
16

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.
William J Zacharias, David B Frank, Jarod A Zepp, Michael P Morley, Farrah A Alkhaleel, Jun Kong, Su Zhou, Edward Cantu, Edward E Morrisey. Nature 2018
245
16

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
16

Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis.
Paul A Reyfman, James M Walter, Nikita Joshi, Kishore R Anekalla, Alexandra C McQuattie-Pimentel, Stephen Chiu, Ramiro Fernandez, Mahzad Akbarpour, Ching-I Chen, Ziyou Ren,[...]. Am J Respir Crit Care Med 2019
353
16

LungMAP: The Molecular Atlas of Lung Development Program.
Maryanne E Ardini-Poleske, Robert F Clark, Charles Ansong, James P Carson, Richard A Corley, Gail H Deutsch, James S Hagood, Naftali Kaminski, Thomas J Mariani, Steven S Potter,[...]. Am J Physiol Lung Cell Mol Physiol 2017
78
14

Building and Regenerating the Lung Cell by Cell.
Jeffrey A Whitsett, Tanya V Kalin, Yan Xu, Vladimir V Kalinichenko. Physiol Rev 2019
64
15


Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation.
David B Frank, Tien Peng, Jarod A Zepp, Melinda Snitow, Tiffaney L Vincent, Ian J Penkala, Zheng Cui, Michael J Herriges, Michael P Morley, Su Zhou,[...]. Cell Rep 2016
106
14

Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis.
Ting Xie, Yizhou Wang, Nan Deng, Guanling Huang, Forough Taghavifar, Yan Geng, Ningshan Liu, Vrishika Kulur, Changfu Yao, Peter Chen,[...]. Cell Rep 2018
183
14

Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.
Anjali Jacob, Michael Morley, Finn Hawkins, Katherine B McCauley, J C Jean, Hillary Heins, Cheng-Lun Na, Timothy E Weaver, Marall Vedaie, Killian Hurley,[...]. Cell Stem Cell 2017
173
13

Vascular endothelial growth factor gene therapy increases survival, promotes lung angiogenesis, and prevents alveolar damage in hyperoxia-induced lung injury: evidence that angiogenesis participates in alveolarization.
Bernard Thébaud, Faruqa Ladha, Evangelos D Michelakis, Monika Sawicka, Gavin Thurston, Farah Eaton, Kyoko Hashimoto, Gwyneth Harry, Alois Haromy, Greg Korbutt,[...]. Circulation 2005
358
13


The pulmonary mesenchyme directs lung development.
David McCulley, Mark Wienhold, Xin Sun. Curr Opin Genet Dev 2015
75
13

PDGF-A signaling is a critical event in lung alveolar myofibroblast development and alveogenesis.
H Boström, K Willetts, M Pekny, P Levéen, P Lindahl, H Hedstrand, M Pekna, M Hellström, S Gebre-Medhin, M Schalling,[...]. Cell 1996
617
13

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte.
Lindsey W Plasschaert, Rapolas Žilionis, Rayman Choo-Wing, Virginia Savova, Judith Knehr, Guglielmo Roma, Allon M Klein, Aron B Jaffe. Nature 2018
354
13

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
252
11

Temporal, spatial, and phenotypical changes of PDGFRα expressing fibroblasts during late lung development.
Mehari Endale, Shawn Ahlfeld, Erik Bao, Xiaoting Chen, Jenna Green, Zach Bess, Matthew T Weirauch, Yan Xu, Anne Karina Perl. Dev Biol 2017
40
20

Secondary crest myofibroblast PDGFRα controls the elastogenesis pathway via a secondary tier of signaling networks during alveologenesis.
Changgong Li, Matt K Lee, Feng Gao, Sha Webster, Helen Di, Jiang Duan, Chang-Yo Yang, Navin Bhopal, Neil Peinado, Gloria Pryhuber,[...]. Development 2019
14
57


Developmental alveolarization of the mouse lung.
Sonja I Mund, Marco Stampanoni, Johannes C Schittny. Dev Dyn 2008
106
11

Diversity of Interstitial Lung Fibroblasts Is Regulated by Platelet-Derived Growth Factor Receptor α Kinase Activity.
Jenna Green, Mehari Endale, Herbert Auer, Anne-Karina T Perl. Am J Respir Cell Mol Biol 2016
55
14

A molecular cell atlas of the human lung from single-cell RNA sequencing.
Kyle J Travaglini, Ahmad N Nabhan, Lolita Penland, Rahul Sinha, Astrid Gillich, Rene V Sit, Stephen Chang, Stephanie D Conley, Yasuo Mori, Jun Seita,[...]. Nature 2020
171
11

Lung organogenesis.
David Warburton, Ahmed El-Hashash, Gianni Carraro, Caterina Tiozzo, Frederic Sala, Orquidea Rogers, Stijn De Langhe, Paul J Kemp, Daniela Riccardi, John Torday,[...]. Curr Top Dev Biol 2010
246
10

Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate.
Yanjie Wang, Zan Tang, Huanwei Huang, Jiao Li, Zheng Wang, Yuanyuan Yu, Chengwei Zhang, Juan Li, Huaping Dai, Fengchao Wang,[...]. Proc Natl Acad Sci U S A 2018
73
10

Efficient Derivation of Functional Human Airway Epithelium from Pluripotent Stem Cells via Temporal Regulation of Wnt Signaling.
Katherine B McCauley, Finn Hawkins, Maria Serra, Dylan C Thomas, Anjali Jacob, Darrell N Kotton. Cell Stem Cell 2017
176
10

The Tcf21 lineage constitutes the lung lipofibroblast population.
Juwon Park, Malina J Ivey, Yanik Deana, Kara L Riggsbee, Emelie Sörensen, Veronika Schwabl, Caroline Sjöberg, Tilda Hjertberg, Ga Young Park, Jessica M Swonger,[...]. Am J Physiol Lung Cell Mol Physiol 2019
20
35

Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting.
Merav Cohen, Amir Giladi, Anna-Dorothea Gorki, Dikla Gelbard Solodkin, Mor Zada, Anastasiya Hladik, Andras Miklosi, Tomer-Meir Salame, Keren Bahar Halpern, Eyal David,[...]. Cell 2018
156
10

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis.
Minzhe Guo, Hui Wang, S Steven Potter, Jeffrey A Whitsett, Yan Xu. PLoS Comput Biol 2015
148
10

Endothelial-derived angiocrine signals induce and sustain regenerative lung alveolarization.
Bi-Sen Ding, Daniel J Nolan, Peipei Guo, Alexander O Babazadeh, Zhongwei Cao, Zev Rosenwaks, Ronald G Crystal, Michael Simons, Thomas N Sato, Stefan Worgall,[...]. Cell 2011
293
10


A three-dimensional study of alveologenesis in mouse lung.
Kelsey Branchfield, Rongbo Li, Vlasta Lungova, Jamie M Verheyden, David McCulley, Xin Sun. Dev Biol 2016
74
10

FGF signaling is required for myofibroblast differentiation during alveolar regeneration.
Anne-Karina T Perl, Emily Gale. Am J Physiol Lung Cell Mol Physiol 2009
73
10

Fgf10-positive cells represent a progenitor cell population during lung development and postnatally.
Elie El Agha, Susanne Herold, Denise Al Alam, Jennifer Quantius, BreAnne MacKenzie, Gianni Carraro, Alena Moiseenko, Cho-Ming Chao, Parviz Minoo, Werner Seeger,[...]. Development 2014
101
10

A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
319
10

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
10

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
10

Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
8

Generation of lung organoids from human pluripotent stem cells in vitro.
Alyssa J Miller, Briana R Dye, Daysha Ferrer-Torres, David R Hill, Arend W Overeem, Lonnie D Shea, Jason R Spence. Nat Protoc 2019
107
8

Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KIT+ Endothelial Progenitor Cells.
Xiaomeng Ren, Vladimir Ustiyan, Minzhe Guo, Guolun Wang, Craig Bolte, Yufang Zhang, Yan Xu, Jeffrey A Whitsett, Tanya V Kalin, Vladimir V Kalinichenko. Am J Respir Crit Care Med 2019
20
30

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
80
8

Sonic Hedgehog Signaling Regulates Myofibroblast Function during Alveolar Septum Formation in Murine Postnatal Lung.
Matthias C Kugler, Cynthia A Loomis, Zhicheng Zhao, Jennifer C Cushman, Li Liu, John S Munger. Am J Respir Cell Mol Biol 2017
30
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.