A citation-based method for searching scientific literature

Viktor Posse, Ali Al-Behadili, Jay P Uhler, Anders R Clausen, Aurelio Reyes, Massimo Zeviani, Maria Falkenberg, Claes M Gustafsson. PLoS Genet 2019
Times Cited: 24







List of co-cited articles
428 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Maintenance and Expression of Mammalian Mitochondrial DNA.
Claes M Gustafsson, Maria Falkenberg, Nils-Göran Larsson. Annu Rev Biochem 2016
243
45

TEFM is a potent stimulator of mitochondrial transcription elongation in vitro.
Viktor Posse, Saba Shahzad, Maria Falkenberg, B Martin Hällberg, Claes M Gustafsson. Nucleic Acids Res 2015
46
37

Mitochondrial biology. Replication-transcription switch in human mitochondria.
Karen Agaronyan, Yaroslav I Morozov, Michael Anikin, Dmitry Temiakov. Science 2015
92
29

Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA.
Maria Falkenberg, Martina Gaspari, Anja Rantanen, Aleksandra Trifunovic, Nils-Göran Larsson, Claes M Gustafsson. Nat Genet 2002
412
29

Mitochondrial transcription factor A is necessary for mtDNA maintenance and embryogenesis in mice.
N G Larsson, J Wang, H Wilhelmsson, A Oldfors, P Rustin, M Lewandoski, G S Barsh, D A Clayton. Nat Genet 1998
29

Primer retention owing to the absence of RNase H1 is catastrophic for mitochondrial DNA replication.
J Bradley Holmes, Gokhan Akman, Stuart R Wood, Kiran Sakhuja, Susana M Cerritelli, Chloe Moss, Mark R Bowmaker, Howard T Jacobs, Robert J Crouch, Ian J Holt. Proc Natl Acad Sci U S A 2015
49
29

Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro.
Sjoerd Wanrooij, Javier Miralles Fusté, Géraldine Farge, Yonghong Shi, Claes M Gustafsson, Maria Falkenberg. Proc Natl Acad Sci U S A 2008
113
29

Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication.
Javier Miralles Fusté, Sjoerd Wanrooij, Elisabeth Jemt, Caroline E Granycome, Tricia J Cluett, Yonghong Shi, Neli Atanassova, Ian J Holt, Claes M Gustafsson, Maria Falkenberg. Mol Cell 2010
117
29

Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice.
Susana M Cerritelli, Ella G Frolova, Chiguang Feng, Alexander Grinberg, Paul E Love, Robert J Crouch. Mol Cell 2003
220
29

RNASEH1 Mutations Impair mtDNA Replication and Cause Adult-Onset Mitochondrial Encephalomyopathy.
Aurelio Reyes, Laura Melchionda, Alessia Nasca, Franco Carrara, Eleonora Lamantea, Alice Zanolini, Costanza Lamperti, Mingyan Fang, Jianguo Zhang, Dario Ronchi,[...]. Am J Hum Genet 2015
57
29

Ribonuclease H: the enzymes in eukaryotes.
Susana M Cerritelli, Robert J Crouch. FEBS J 2009
404
29

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
162
29

Structural Basis of Mitochondrial Transcription Initiation.
Hauke S Hillen, Yaroslav I Morozov, Azadeh Sarfallah, Dmitry Temiakov, Patrick Cramer. Cell 2017
52
25

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.
Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse,[...]. Proc Natl Acad Sci U S A 2015
156
25

Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.
Christian Kukat, Christian A Wurm, Henrik Spåhr, Maria Falkenberg, Nils-Göran Larsson, Stefan Jakobs. Proc Natl Acad Sci U S A 2011
281
25

The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
251
25

TEFM regulates both transcription elongation and RNA processing in mitochondria.
Shan Jiang, Camilla Koolmeister, Jelena Misic, Stefan Siira, Inge Kühl, Eduardo Silva Ramos, Maria Miranda, Min Jiang, Viktor Posse, Oleksandr Lytovchenko,[...]. EMBO Rep 2019
15
40

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
197
25

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
402
25

RNase H enables efficient repair of R-loop induced DNA damage.
Jeremy D Amon, Douglas Koshland. Elife 2016
63
25

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
260
25

Human mitochondrial degradosome prevents harmful mitochondrial R loops and mitochondrial genome instability.
Sonia Silva, Lola P Camino, Andrés Aguilera. Proc Natl Acad Sci U S A 2018
27
25

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
180
25

Mechanism of Transcription Anti-termination in Human Mitochondria.
Hauke S Hillen, Andrey V Parshin, Karen Agaronyan, Yaroslav I Morozov, James J Graber, Aleksandar Chernev, Kathrin Schwinghammer, Henning Urlaub, Michael Anikin, Patrick Cramer,[...]. Cell 2017
35
20

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.
Paulina H Wanrooij, Jay P Uhler, Yonghong Shi, Fredrik Westerlund, Maria Falkenberg, Claes M Gustafsson. Nucleic Acids Res 2012
89
20

A two-nuclease pathway involving RNase H1 is required for primer removal at human mitochondrial OriL.
Ali Al-Behadili, Jay P Uhler, Anna-Karin Berglund, Bradley Peter, Mara Doimo, Aurelio Reyes, Sjoerd Wanrooij, Massimo Zeviani, Maria Falkenberg. Nucleic Acids Res 2018
11
45

In vivo occupancy of mitochondrial single-stranded DNA binding protein supports the strand displacement mode of DNA replication.
Javier Miralles Fusté, Yonghong Shi, Sjoerd Wanrooij, Xuefeng Zhu, Elisabeth Jemt, Örjan Persson, Nasim Sabouri, Claes M Gustafsson, Maria Falkenberg. PLoS Genet 2014
76
20

The layered structure of human mitochondrial DNA nucleoids.
Daniel F Bogenhagen, Denis Rousseau, Stephanie Burke. J Biol Chem 2008
293
20

Viable RNaseH1 knockout mice show RNaseH1 is essential for R loop processing, mitochondrial and liver function.
Walt F Lima, Heather M Murray, Sagar S Damle, Christopher E Hart, Gene Hung, Cheryl Li De Hoyos, Xue-Hai Liang, Stanley T Crooke. Nucleic Acids Res 2016
42
20

Regulation of DNA replication at the end of the mitochondrial D-loop involves the helicase TWINKLE and a conserved sequence element.
Elisabeth Jemt, Örjan Persson, Yonghong Shi, Majda Mehmedovic, Jay P Uhler, Marcela Dávila López, Christoph Freyer, Claes M Gustafsson, Tore Samuelsson, Maria Falkenberg. Nucleic Acids Res 2015
42
20

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
109
20

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
196
20

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
417
20

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
237
20

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
214
20

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
267
20

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
104
20


Pathological ribonuclease H1 causes R-loop depletion and aberrant DNA segregation in mitochondria.
Gokhan Akman, Radha Desai, Laura J Bailey, Takehiro Yasukawa, Ilaria Dalla Rosa, Romina Durigon, J Bradley Holmes, Chloe F Moss, Mara Mennuni, Henry Houlden,[...]. Proc Natl Acad Sci U S A 2016
34
20

Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1.
Hai Dang Nguyen, Tribhuwan Yadav, Sumanprava Giri, Borja Saez, Timothy A Graubert, Lee Zou. Mol Cell 2017
105
20

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
102
20

Structure of human mitochondrial RNA polymerase.
Rieke Ringel, Marina Sologub, Yaroslav I Morozov, Dmitry Litonin, Patrick Cramer, Dmitry Temiakov. Nature 2011
126
16

TEFM (c17orf42) is necessary for transcription of human mtDNA.
Michal Minczuk, Jiuya He, Anna M Duch, Thijs J Ettema, Aleksander Chlebowski, Karol Dzionek, Leo G J Nijtmans, Martijn A Huynen, Ian J Holt. Nucleic Acids Res 2011
96
16

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
710
16

Conserved sequence box II directs transcription termination and primer formation in mitochondria.
Xuan Hoi Pham, Géraldine Farge, Yonghong Shi, Martina Gaspari, Claes M Gustafsson, Maria Falkenberg. J Biol Chem 2006
89
16

POLRMT regulates the switch between replication primer formation and gene expression of mammalian mtDNA.
Inge Kühl, Maria Miranda, Viktor Posse, Dusanka Milenkovic, Arnaud Mourier, Stefan J Siira, Nina A Bonekamp, Ulla Neumann, Aleksandra Filipovska, Paola Loguercio Polosa,[...]. Sci Adv 2016
46
16

G-quadruplex structures in RNA stimulate mitochondrial transcription termination and primer formation.
Paulina H Wanrooij, Jay P Uhler, Tomas Simonsson, Maria Falkenberg, Claes M Gustafsson. Proc Natl Acad Sci U S A 2010
105
16


Reconstitution of a minimal mtDNA replisome in vitro.
Jenny A Korhonen, Xuan Hoi Pham, Mina Pellegrini, Maria Falkenberg. EMBO J 2004
247
16

Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA.
Thomas J Nicholls, Cristina A Nadalutti, Elisa Motori, Ewen W Sommerville, Gráinne S Gorman, Swaraj Basu, Emily Hoberg, Doug M Turnbull, Patrick F Chinnery, Nils-Göran Larsson,[...]. Mol Cell 2018
50
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.