A citation-based method for searching scientific literature

Cheen Euong Ang, Qing Ma, Orly L Wapinski, ShengHua Fan, Ryan A Flynn, Qian Yi Lee, Bradley Coe, Masahiro Onoguchi, Victor Hipolito Olmos, Brian T Do, Lynn Dukes-Rimsky, Jin Xu, Koji Tanabe, LiangJiang Wang, Ulrich Elling, Josef M Penninger, Yang Zhao, Kun Qu, Evan E Eichler, Anand Srivastava, Marius Wernig, Howard Y Chang. Elife 2019
Times Cited: 29







List of co-cited articles
255 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
44

The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.
Alexander D Ramos, Rebecca E Andersen, Siyuan John Liu, Tomasz Jan Nowakowski, Sung Jun Hong, Caitlyn Gertz, Ryan D Salinas, Hosniya Zarabi, Arnold R Kriegstein, Daniel A Lim. Cell Stem Cell 2015
196
27

The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis.
Shi-Yan Ng, Gireesh K Bogu, Boon Seng Soh, Lawrence W Stanton. Mol Cell 2013
261
24

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.
Alexander D Ramos, Aaron Diaz, Abhinav Nellore, Ryan N Delgado, Ki-Youb Park, Gabriel Gonzales-Roybal, Michael C Oldham, Jun S Song, Daniel A Lim. Cell Stem Cell 2013
171
24


The Long Noncoding RNA Pnky Is a Trans-acting Regulator of Cortical Development In Vivo.
Rebecca E Andersen, Sung Jun Hong, Justin J Lim, Miao Cui, Brock A Harpur, Elizabeth Hwang, Ryan N Delgado, Alexander D Ramos, Siyuan John Liu, Benjamin J Blencowe,[...]. Dev Cell 2019
17
41

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
20

Local regulation of gene expression by lncRNA promoters, transcription and splicing.
Jesse M Engreitz, Jenna E Haines, Elizabeth M Perez, Glen Munson, Jenny Chen, Michael Kane, Patrick E McDonel, Mitchell Guttman, Eric S Lander. Nature 2016
567
20

Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry.
Allison M Bond, Michael J W Vangompel, Evgeny A Sametsky, Mary F Clark, Julie C Savage, John F Disterhoft, Jhumku D Kohtz. Nat Neurosci 2009
267
20

An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.
Nianwei Lin, Kung-Yen Chang, Zhonghan Li, Keith Gates, Zacharia A Rana, Jason Dang, Danhua Zhang, Tianxu Han, Chao-Shun Yang, Thomas J Cunningham,[...]. Mol Cell 2014
249
20

lincRNAs act in the circuitry controlling pluripotency and differentiation.
Mitchell Guttman, Julie Donaghey, Bryce W Carey, Manuel Garber, Jennifer K Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert Ach, Laurakay Bruhn,[...]. Nature 2011
20

Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment.
Julieta Aprea, Silvia Prenninger, Martina Dori, Tanay Ghosh, Laura Sebastian Monasor, Elke Wessendorf, Sara Zocher, Simone Massalini, Dimitra Alexopoulou, Mathias Lesche,[...]. EMBO J 2013
139
17

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.
Igor Ulitsky, Alena Shkumatava, Calvin H Jan, Hazel Sive, David P Bartel. Cell 2011
759
17

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
17

A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain.
Benjamin Kleaveland, Charlie Y Shi, Joanna Stefano, David P Bartel. Cell 2018
243
17

An atlas of human long non-coding RNAs with accurate 5' ends.
Chung-Chau Hon, Jordan A Ramilowski, Jayson Harshbarger, Nicolas Bertin, Owen J L Rackham, Julian Gough, Elena Denisenko, Sebastian Schmeier, Thomas M Poulsen, Jessica Severin,[...]. Nature 2017
444
17


Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation.
Tim R Mercer, Irfan A Qureshi, Solen Gokhan, Marcel E Dinger, Guangyu Li, John S Mattick, Mark F Mehler. BMC Neurosci 2010
286
17

The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.
Masamitsu Sone, Tetsutaro Hayashi, Hiroshi Tarui, Kiyokazu Agata, Masatoshi Takeichi, Shinichi Nakagawa. J Cell Sci 2007
225
17

Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution.
James A Briggs, Ernst J Wolvetang, John S Mattick, John L Rinn, Guy Barry. Neuron 2015
214
17

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
17

lincRNAs: genomics, evolution, and mechanisms.
Igor Ulitsky, David P Bartel. Cell 2013
13

Long noncoding RNAs in cell-fate programming and reprogramming.
Ryan A Flynn, Howard Y Chang. Cell Stem Cell 2014
312
13

Towards a therapy for Angelman syndrome by targeting a long non-coding RNA.
Linyan Meng, Amanda J Ward, Seung Chun, C Frank Bennett, Arthur L Beaudet, Frank Rigo. Nature 2015
251
13

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.
Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff,[...]. Cell 2013
330
13

Rapid evolutionary turnover underlies conserved lncRNA-genome interactions.
Jeffrey J Quinn, Qiangfeng C Zhang, Plamen Georgiev, Ibrahim A Ilik, Asifa Akhtar, Howard Y Chang. Genes Dev 2016
90
13

Long non-coding RNAs in neurodevelopmental disorders.
Ilse I G M van de Vondervoort, Peter M Gordebeke, Nima Khoshab, Paul H E Tiesinga, Jan K Buitelaar, Tamas Kozicz, Armaz Aschrafi, Jeffrey C Glennon. Front Mol Neurosci 2013
43
13

Aberrant expression of long noncoding RNAs in autistic brain.
Mark N Ziats, Owen M Rennert. J Mol Neurosci 2013
126
13

Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain.
Jasmina Ponjavic, Peter L Oliver, Gerton Lunter, Chris P Ponting. PLoS Genet 2009
276
13

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
13

Long noncoding RNA as modular scaffold of histone modification complexes.
Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordon K Wang, Fei Lan, Yang Shi, Eran Segal, Howard Y Chang. Science 2010
13

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.
Monika Piwecka, Petar Glažar, Luis R Hernandez-Miranda, Sebastian Memczak, Susanne A Wolf, Agnieszka Rybak-Wolf, Andrei Filipchyk, Filippos Klironomos, Cledi Alicia Cerda Jara, Pascal Fenske,[...]. Science 2017
499
13

Multiple knockout mouse models reveal lincRNAs are required for life and brain development.
Martin Sauvageau, Loyal A Goff, Simona Lodato, Boyan Bonev, Abigail F Groff, Chiara Gerhardinger, Diana B Sanchez-Gomez, Ezgi Hacisuleyman, Eric Li, Matthew Spence,[...]. Elife 2013
452
13

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
13

CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells.
S John Liu, Max A Horlbeck, Seung Woo Cho, Harjus S Birk, Martina Malatesta, Daniel He, Frank J Attenello, Jacqueline E Villalta, Min Y Cho, Yuwen Chen,[...]. Science 2017
315
13

The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain.
Ivelisse Cajigas, Abhijit Chakraborty, Kelsey R Swyter, Hao Luo, Monique Bastidas, Maximilliano Nigro, Elizabeth R Morris, Sean Chen, Michael J W VanGompel, David Leib,[...]. Mol Cell 2018
26
15

The long non-coding RNA Paupar regulates the expression of both local and distal genes.
Keith W Vance, Stephen N Sansom, Sheena Lee, Vladislava Chalei, Lesheng Kong, Sarah E Cooper, Peter L Oliver, Chris P Ponting. EMBO J 2014
137
13

The long non-coding RNA Dali is an epigenetic regulator of neural differentiation.
Vladislava Chalei, Stephen N Sansom, Lesheng Kong, Sheena Lee, Juan F Montiel, Keith W Vance, Chris P Ponting. Elife 2014
95
13

Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain.
Loyal A Goff, Abigail F Groff, Martin Sauvageau, Zachary Trayes-Gibson, Diana B Sanchez-Gomez, Michael Morse, Ryan D Martin, Lara E Elcavage, Stephen C Liapis, Meryem Gonzalez-Celeiro,[...]. Proc Natl Acad Sci U S A 2015
91
13

The long non-coding RNA Paupar promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis.
Ioanna Pavlaki, Farah Alammari, Bin Sun, Neil Clark, Tamara Sirey, Sheena Lee, Dan J Woodcock, Chris P Ponting, Francis G Szele, Keith W Vance. EMBO J 2018
29
13

The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing.
G Barry, J A Briggs, D P Vanichkina, E M Poth, N J Beveridge, V S Ratnu, S P Nayler, K Nones, J Hu, T W Bredy,[...]. Mol Psychiatry 2014
254
13


Generation of induced neuronal cells by the single reprogramming factor ASCL1.
Soham Chanda, Cheen Euong Ang, Jonathan Davila, ChangHui Pak, Moritz Mall, Qian Yi Lee, Henrik Ahlenius, Seung Woo Jung, Thomas C Südhof, Marius Wernig. Stem Cell Reports 2014
195
10

Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
10

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.
Ci Chu, Kun Qu, Franklin L Zhong, Steven E Artandi, Howard Y Chang. Mol Cell 2011
771
10

Rapid single-step induction of functional neurons from human pluripotent stem cells.
Yingsha Zhang, Changhui Pak, Yan Han, Henrik Ahlenius, Zhenjie Zhang, Soham Chanda, Samuele Marro, Christopher Patzke, Claudio Acuna, Jason Covy,[...]. Neuron 2013
571
10

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
10

Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
10

Identification of long non-coding RNAs involved in neuronal development and intellectual disability.
Eva D'haene, Eva Z Jacobs, Pieter-Jan Volders, Tim De Meyer, Björn Menten, Sarah Vergult. Sci Rep 2016
37
10

Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development.
Moritz Eißmann, Tony Gutschner, Monika Hämmerle, Stefan Günther, Maïwen Caudron-Herger, Matthias Groß, Peter Schirmacher, Karsten Rippe, Thomas Braun, Martin Zörnig,[...]. RNA Biol 2012
260
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.