A citation-based method for searching scientific literature

Alina Bluhm, Nikenza Viceconte, Fudong Li, Grishma Rane, Sandra Ritz, Suman Wang, Michal Levin, Yunyu Shi, Dennis Kappei, Falk Butter. Nucleic Acids Res 2019
Times Cited: 8







List of co-cited articles
41 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human telomeres contain at least three types of G-rich repeat distributed non-randomly.
R C Allshire, M Dempster, N D Hastie. Nucleic Acids Res 1989
296
37

Variant repeats are interspersed throughout the telomeres and recruit nuclear receptors in ALT cells.
Dimitri Conomos, Michael D Stutz, Mark Hills, Axel A Neumann, Tracy M Bryan, Roger R Reddel, Hilda A Pickett. J Cell Biol 2012
79
37

Telomere sequence content can be used to determine ALT activity in tumours.
Michael Lee, Erdahl T Teber, Oliver Holmes, Katia Nones, Ann-Marie Patch, Rebecca A Dagg, Loretta M S Lau, Joyce H Lee, Christine E Napier, Jonathan W Arthur,[...]. Nucleic Acids Res 2018
17
25

Evidence for alternative lengthening of telomeres in liposarcomas in the absence of ALT-associated PML bodies.
Jennie N Jeyapalan, Aaron Mendez-Bermudez, Nadia Zaffaroni, Yuri E Dubrova, Nicola J Royle. Int J Cancer 2008
40
25

Spontaneous occurrence of telomeric DNA damage response in the absence of chromosome fusions.
Anthony J Cesare, Zeenia Kaul, Scott B Cohen, Christine E Napier, Hilda A Pickett, Axel A Neumann, Roger R Reddel. Nat Struct Mol Biol 2009
163
25

Interchromosomal homology searches drive directional ALT telomere movement and synapsis.
Nam Woo Cho, Robert L Dilley, Michael A Lampson, Roger A Greenberg. Cell 2014
189
25

NuRD-ZNF827 recruitment to telomeres creates a molecular scaffold for homologous recombination.
Dimitri Conomos, Roger R Reddel, Hilda A Pickett. Nat Struct Mol Biol 2014
62
25

Break-induced replication and telomerase-independent telomere maintenance require Pol32.
John R Lydeard, Suvi Jain, Miyuki Yamaguchi, James E Haber. Nature 2007
331
25

Nuclear receptors regulate alternative lengthening of telomeres through a novel noncanonical FANCD2 pathway.
Mafei Xu, Jun Qin, Leiming Wang, Hui-Ju Lee, Chung-Yang Kao, Dan Liu, Zhou Songyang, Junjie Chen, Ming-Jer Tsai, Sophia Y Tsai. Sci Adv 2019
9
25

Human telomeres that contain (CTAGGG)n repeats show replication dependent instability in somatic cells and the male germline.
Aaron Mendez-Bermudez, Mark Hills, Hilda A Pickett, Anh Tuân Phan, Jean-Louis Mergny, Jean-François Riou, Nicola J Royle. Nucleic Acids Res 2009
26
25

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
25

Purification of proteins associated with specific genomic Loci.
Jérôme Déjardin, Robert E Kingston. Cell 2009
342
25

The roles of WRN and BLM RecQ helicases in the Alternative Lengthening of Telomeres.
Aaron Mendez-Bermudez, Alberto Hidalgo-Bravo, Victoria E Cotton, Athanasia Gravani, Jennie N Jeyapalan, Nicola J Royle. Nucleic Acids Res 2012
33
25


Nuclear-receptor-mediated telomere insertion leads to genome instability in ALT cancers.
Paulina Marzec, Claudia Armenise, Gaëlle Pérot, Fani-Marlen Roumelioti, Eugenia Basyuk, Sarantis Gagos, Frédéric Chibon, Jérôme Déjardin. Cell 2015
56
25

Alternative lengthening of telomeres is characterized by high rates of telomeric exchange.
J Arturo Londoño-Vallejo, Héra Der-Sarkissian, Lucien Cazes, Silvia Bacchetti, Roger R Reddel. Cancer Res 2004
211
25

Molecular characterization of inter-telomere and intra-telomere mutations in human ALT cells.
Helen Varley, Hilda A Pickett, Jennifer L Foxon, Roger R Reddel, Nicola J Royle. Nat Genet 2002
86
25


Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
194
25

Unusual telomeric DNAs in human telomerase-negative immortalized cells.
Akira Nabetani, Fuyuki Ishikawa. Mol Cell Biol 2009
77
25

Telomerase-negative immortalized human cells contain a novel type of promyelocytic leukemia (PML) body.
T R Yeager, A A Neumann, A Englezou, L I Huschtscha, J R Noble, R R Reddel. Cancer Res 1999
492
25

Strand break-induced replication fork collapse leads to C-circles, C-overhangs and telomeric recombination.
Tianpeng Zhang, Zepeng Zhang, Gong Shengzhao, Xiaocui Li, Haiying Liu, Yong Zhao. PLoS Genet 2019
20
25

Suppression of the alternative lengthening of telomere pathway by the chromatin remodelling factor ATRX.
David Clynes, Clare Jelinska, Barbara Xella, Helena Ayyub, Caroline Scott, Matthew Mitson, Stephen Taylor, Douglas R Higgs, Richard J Gibbons. Nat Commun 2015
128
25

Prevalence of the alternative lengthening of telomeres telomere maintenance mechanism in human cancer subtypes.
Christopher M Heaphy, Andrea P Subhawong, Seung-Mo Hong, Michael G Goggins, Elizabeth A Montgomery, Edward Gabrielson, George J Netto, Jonathan I Epstein, Tamara L Lotan, William H Westra,[...]. Am J Pathol 2011
279
25

Telomere maintenance by recombination in human cells.
M A Dunham, A A Neumann, C L Fasching, R R Reddel. Nat Genet 2000
645
25

Alternative Lengthening of Telomeres through Two Distinct Break-Induced Replication Pathways.
Jia-Min Zhang, Tribhuwan Yadav, Jian Ouyang, Li Lan, Lee Zou. Cell Rep 2019
82
25

Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway.
Courtney A Lovejoy, Wendi Li, Steven Reisenweber, Supawat Thongthip, Joanne Bruno, Titia de Lange, Saurav De, John H J Petrini, Patricia A Sung, Maria Jasin,[...]. PLoS Genet 2012
342
25

Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin.
Harikleia Episkopou, Irena Draskovic, Amandine Van Beneden, Gaëlle Tilman, Marina Mattiussi, Matthieu Gobin, Nausica Arnoult, Arturo Londoño-Vallejo, Anabelle Decottignies. Nucleic Acids Res 2014
96
25

Telomere elongation in immortal human cells without detectable telomerase activity.
T M Bryan, A Englezou, J Gupta, S Bacchetti, R R Reddel. EMBO J 1995
976
25

A robust assay for alternative lengthening of telomeres in tumors shows the significance of alternative lengthening of telomeres in sarcomas and astrocytomas.
Jeremy D Henson, Jonathan A Hannay, Stanley W McCarthy, Janice A Royds, Thomas R Yeager, Robert A Robinson, Stephen B Wharton, David A Jellinek, Susan M Arbuckle, Jinyoung Yoo,[...]. Clin Cancer Res 2005
201
25

Chromothripsis and Kataegis Induced by Telomere Crisis.
John Maciejowski, Yilong Li, Nazario Bosco, Peter J Campbell, Titia de Lange. Cell 2015
303
25

Break-induced replication and recombinational telomere elongation in yeast.
Michael J McEachern, James E Haber. Annu Rev Biochem 2006
244
25

DNA C-circles are specific and quantifiable markers of alternative-lengthening-of-telomeres activity.
Jeremy D Henson, Ying Cao, Lily I Huschtscha, Andy C Chang, Amy Y M Au, Hilda A Pickett, Roger R Reddel. Nat Biotechnol 2009
264
25

Suppression of alternative lengthening of telomeres by Sp100-mediated sequestration of the MRE11/RAD50/NBS1 complex.
Wei-Qin Jiang, Ze-Huai Zhong, Jeremy D Henson, Axel A Neumann, Andy C-M Chang, Roger R Reddel. Mol Cell Biol 2005
102
25

The FANCM-BLM-TOP3A-RMI complex suppresses alternative lengthening of telomeres (ALT).
Robert Lu, Julienne J O'Rourke, Alexander P Sobinoff, Joshua A M Allen, Christopher B Nelson, Christopher G Tomlinson, Michael Lee, Roger R Reddel, Andrew J Deans, Hilda A Pickett. Nat Commun 2019
44
25


The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher,[...]. Nucleic Acids Res 2019
25


clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
25


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
25

RAD52 and SLX4 act nonepistatically to ensure telomere stability during alternative telomere lengthening.
Priyanka Verma, Robert L Dilley, Tianpeng Zhang, Melina T Gyparaki, Yiwen Li, Roger A Greenberg. Genes Dev 2019
37
12


Alternative lengthening of telomeres can be maintained by preferential elongation of lagging strands.
Jaewon Min, Woodring E Wright, Jerry W Shay. Nucleic Acids Res 2017
30
12


SMARCAL1 Resolves Replication Stress at ALT Telomeres.
Kelli E Cox, Alexandre Maréchal, Rachel Litman Flynn. Cell Rep 2016
49
12

Alternative lengthening of telomeres in mammalian cells.
Jeremy D Henson, Axel A Neumann, Thomas R Yeager, Roger R Reddel. Oncogene 2002
458
12

Alternative lengthening of telomeres: models, mechanisms and implications.
Anthony J Cesare, Roger R Reddel. Nat Rev Genet 2010
562
12

Telomere extension by telomerase and ALT generates variant repeats by mechanistically distinct processes.
Michael Lee, Mark Hills, Dimitri Conomos, Michael D Stutz, Rebecca A Dagg, Loretta M S Lau, Roger R Reddel, Hilda A Pickett. Nucleic Acids Res 2014
47
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.