A citation-based method for searching scientific literature

Kristina Doing-Harris, Bruce E Bray, Anne Thackeray, Rashmee U Shah, Yijun Shao, Yan Cheng, Qing Zeng-Treitler, Jennifer H Garvin, Charlene Weir. J Biomed Semantics 2019
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


UK phenomics platform for developing and validating electronic health record phenotypes: CALIBER.
Spiros Denaxas, Arturo Gonzalez-Izquierdo, Kenan Direk, Natalie K Fitzpatrick, Ghazaleh Fatemifar, Amitava Banerjee, Richard J B Dobson, Laurence J Howe, Valerie Kuan, R Tom Lumbers,[...]. J Am Med Inform Assoc 2019
34
50


ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata.
Satya S Sahoo, Joshua Valdez, Matthew Kim, Michael Rueschman, Susan Redline. Int J Med Inform 2019
5
50

ROBOT: A Tool for Automating Ontology Workflows.
Rebecca C Jackson, James P Balhoff, Eric Douglass, Nomi L Harris, Christopher J Mungall, James A Overton. BMC Bioinformatics 2019
15
50

Phenotype annotation with the ontology of microbial phenotypes (OMP).
Deborah A Siegele, Sandra A LaBonte, Peter I-Fan Wu, Marcus C Chibucos, Suvarna Nandendla, Michelle G Giglio, James C Hu. J Biomed Semantics 2019
5
50


Re-curation and rational enrichment of knowledge graphs in Biological Expression Language.
Charles Tapley Hoyt, Daniel Domingo-Fernández, Rana Aldisi, Lingling Xu, Kristian Kolpeja, Sandra Spalek, Esther Wollert, John Bachman, Benjamin M Gyori, Patrick Greene,[...]. Database (Oxford) 2019
3
50

PhenPath: a tool for characterizing biological functions underlying different phenotypes.
Giulia Babbi, Pier Luigi Martelli, Rita Casadio. BMC Genomics 2019
6
50

CirGO: an alternative circular way of visualising gene ontology terms.
Irina Kuznetsova, Artur Lugmayr, Stefan J Siira, Oliver Rackham, Aleksandra Filipovska. BMC Bioinformatics 2019
23
50

Rare disease knowledge enrichment through a data-driven approach.
Feichen Shen, Yiqing Zhao, Liwei Wang, Majid Rastegar Mojarad, Yanshan Wang, Sijia Liu, Hongfang Liu. BMC Med Inform Decis Mak 2019
11
50

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.
Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf. Bioinformatics 2020
3
50

BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies.
Andre Lamurias, Diana Sousa, Luka A Clarke, Francisco M Couto. BMC Bioinformatics 2019
6
50


Knowledge Representation and Management, It's Time to Integrate!
F Dhombres, J Charlet. Yearb Med Inform 2017
5
50


Ontology patterns for the representation of quality changes of cells in time.
Patryk Burek, Nico Scherf, Heinrich Herre. J Biomed Semantics 2019
2
50

Computer-Assisted Diagnostic Coding: Effectiveness of an NLP-based approach using SNOMED CT to ICD-10 mappings.
Anthony N Nguyen, Donna Truran, Madonna Kemp, Bevan Koopman, David Conlan, John O'Dwyer, Ming Zhang, Sarvnaz Karimi, Hamed Hassanzadeh, Michael J Lawley,[...]. AMIA Annu Symp Proc 2018
8
50

All talk, no action?: the global diffusion and clinical implementation of the international classification of functioning, disability, and health.
Niklas M Wiegand, Julia Belting, Christine Fekete, Christoph Gutenbrunner, Jan D Reinhardt. Am J Phys Med Rehabil 2012
36
50



Reconsideration of the scheme of the international classification of functioning, disability and health: incentives from the Netherlands for a global debate.
Yvonne F Heerkens, Marjolein de Weerd, Machteld Huber, Carin P M de Brouwer, Sabina van der Veen, Rom J M Perenboom, Coen H van Gool, Huib Ten Napel, Marja van Bon-Martens, Hillegonda A Stallinga,[...]. Disabil Rehabil 2018
20
50

Measuring impact of environmental factors on human functioning and disability: a review of various scientific approaches.
Jan D Reinhardt, Janice Miller, Gerold Stucki, Catherine Sykes, David B Gray. Disabil Rehabil 2011
25
50

Prevalence of Disability and Disability Type Among Adults--United States, 2013.
Elizabeth A Courtney-Long, Dianna D Carroll, Qing C Zhang, Alissa C Stevens, Shannon Griffin-Blake, Brian S Armour, Vincent A Campbell. MMWR Morb Mortal Wkly Rep 2015
118
50

Use of electronic health records and standardized terminologies: A nationwide survey of nursing staff experiences.
Kim De Groot, Anke J E De Veer, Wolter Paans, Anneke L Francke. Int J Nurs Stud 2020
6
50

HARE: a Flexible Highlighting Annotator for Ranking and Exploration.
Denis Newman-Griffis, Eric Fosler-Lussier. Proc Conf Empir Methods Nat Lang Process 2019
3
50

Systems Science in Rehabilitation Practice Realized.
Karen Chesbrough, Matt Elrod, James J Irrgang. Phys Ther 2018
2
50

Semantic annotation in biomedicine: the current landscape.
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
18
50

Moonstone: a novel natural language processing system for inferring social risk from clinical narratives.
Mike Conway, Salomeh Keyhani, Lee Christensen, Brett R South, Marzieh Vali, Louise C Walter, Danielle L Mowery, Samir Abdelrahman, Wendy W Chapman. J Biomed Semantics 2019
7
50

Deep neural models for ICD-10 coding of death certificates and autopsy reports in free-text.
Francisco Duarte, Bruno Martins, Cátia Sousa Pinto, Mário J Silva. J Biomed Inform 2018
13
50

Disease Trajectories and End-of-Life Care for Dementias: Latent Topic Modeling and Trend Analysis Using Clinical Notes.
Liqin Wang, Joshua Lakin, Clay Riley, Zfania Korach, Laura N Frain, Li Zhou. AMIA Annu Symp Proc 2018
8
50


Optimizing health system response to patient's needs: an argument for the importance of functioning information.
Maren Hopfe, Birgit Prodinger, Jerome E Bickenbach, Gerold Stucki. Disabil Rehabil 2018
12
50

A Quantitative and Qualitative Evaluation of Sentence Boundary Detection for the Clinical Domain.
Denis Griffis, Chaitanya Shivade, Eric Fosler-Lussier, Albert M Lai. AMIA Jt Summits Transl Sci Proc 2016
7
50

Identification and Use of Frailty Indicators from Text to Examine Associations with Clinical Outcomes Among Patients with Heart Failure.
Yijun Shao, April F Mohanty, Ali Ahmed, Charlene R Weir, Bruce E Bray, Rashmee U Shah, Douglas Redd, Qing Zeng-Treitler. AMIA Annu Symp Proc 2017
17
50

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).
Yonghui Wu, Joshua C Denny, S Trent Rosenbloom, Randolph A Miller, Dario A Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu. J Am Med Inform Assoc 2017
21
50

Progress and pitfalls in the use of the International Physical Activity Questionnaire (IPAQ) for adult physical activity surveillance.
Adrian Bauman, Barbara E Ainsworth, Fiona Bull, Cora L Craig, Maria Hagströmer, James F Sallis, Michael Pratt, Michael Sjöström. J Phys Act Health 2009
104
50

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
91
50

Capturing the Patient's Perspective: a Review of Advances in Natural Language Processing of Health-Related Text.
G Gonzalez-Hernandez, A Sarker, K O'Connor, G Savova. Yearb Med Inform 2017
34
50

Challenges in adapting existing clinical natural language processing systems to multiple, diverse health care settings.
David S Carrell, Robert E Schoen, Daniel A Leffler, Michele Morris, Sherri Rose, Andrew Baer, Seth D Crockett, Rebecca A Gourevitch, Katie M Dean, Ateev Mehrotra. J Am Med Inform Assoc 2017
36
50

Data extraction from electronic health records (EHRs) for quality measurement of the physical therapy process: comparison between EHR data and survey data.
Marijn Scholte, Simone A van Dulmen, Catherina W M Neeleman-Van der Steen, Philip J van der Wees, Maria W G Nijhuis-van der Sanden, Jozé Braspenning. BMC Med Inform Decis Mak 2016
8
50

Comparing deep learning and concept extraction based methods for patient phenotyping from clinical narratives.
Sebastian Gehrmann, Franck Dernoncourt, Yeran Li, Eric T Carlson, Joy T Wu, Jonathan Welt, John Foote, Edward T Moseley, David W Grant, Patrick D Tyler,[...]. PLoS One 2018
42
50

Word Sense Disambiguation of Medical Terms via Recurrent Convolutional Neural Networks.
Sven Festag, Cord Spreckelsen. Stud Health Technol Inform 2017
4
50

Functional status and well-being of patients with chronic conditions. Results from the Medical Outcomes Study.
A L Stewart, S Greenfield, R D Hays, K Wells, W H Rogers, S D Berry, E A McGlynn, J E Ware. JAMA 1989
50

Comparing clinician descriptions of frailty and geriatric syndromes using electronic health records: a retrospective cohort study.
Laura J Anzaldi, Ashwini Davison, Cynthia M Boyd, Bruce Leff, Hadi Kharrazi. BMC Geriatr 2017
30
50

Reporting about disability evaluation in European countries.
Jessica Anner, Regina Kunz, Wout de Boer. Disabil Rehabil 2014
23
50

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
207
50

Interpretable deep learning to map diagnostic texts to ICD-10 codes.
Aitziber Atutxa, Arantza Díaz de Ilarraza, Koldo Gojenola, Maite Oronoz, Olatz Perez-de-Viñaspre. Int J Med Inform 2019
7
50

A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria.
Samson W Tu, Csongor I Nyulas, Tania Tudorache, Mark A Musen. AMIA Annu Symp Proc 2015
4
50

Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings
Akm Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru. Proc IEEE Int Symp Bioinformatics Bioeng 2017
8
50

MIMIC-III, a freely accessible critical care database.
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
959
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.