A citation-based method for searching scientific literature

Bryan Briney, Anne Inderbitzin, Collin Joyce, Dennis R Burton. Nature 2019
Times Cited: 166







List of co-cited articles
1000 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


High frequency of shared clonotypes in human B cell receptor repertoires.
Cinque Soto, Robin G Bombardi, Andre Branchizio, Nurgun Kose, Pranathi Matta, Alexander M Sevy, Robert S Sinkovits, Pavlo Gilchuk, Jessica A Finn, James E Crowe. Nature 2019
117
35

Convergent antibody responses to SARS-CoV-2 in convalescent individuals.
Davide F Robbiani, Christian Gaebler, Frauke Muecksch, Julio C C Lorenzi, Zijun Wang, Alice Cho, Marianna Agudelo, Christopher O Barnes, Anna Gazumyan, Shlomo Finkin,[...]. Nature 2020
32

Potent neutralizing antibodies from COVID-19 patients define multiple targets of vulnerability.
Philip J M Brouwer, Tom G Caniels, Karlijn van der Straten, Jonne L Snitselaar, Yoann Aldon, Sandhya Bangaru, Jonathan L Torres, Nisreen M A Okba, Mathieu Claireaux, Gius Kerster,[...]. Science 2020
625
26

Structural basis of a shared antibody response to SARS-CoV-2.
Meng Yuan, Hejun Liu, Nicholas C Wu, Chang-Chun D Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry Tien,[...]. Science 2020
273
26

IgBLAST: an immunoglobulin variable domain sequence analysis tool.
Jian Ye, Ning Ma, Thomas L Madden, James M Ostell. Nucleic Acids Res 2013
533
21

Potent Neutralizing Antibodies against SARS-CoV-2 Identified by High-Throughput Single-Cell Sequencing of Convalescent Patients' B Cells.
Yunlong Cao, Bin Su, Xianghua Guo, Wenjie Sun, Yongqiang Deng, Linlin Bao, Qinyu Zhu, Xu Zhang, Yinghui Zheng, Chenyang Geng,[...]. Cell 2020
671
21

Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model.
Thomas F Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-Ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan Woehl,[...]. Science 2020
781
20

Multi-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection.
Ian Setliff, Wyatt J McDonnell, Nagarajan Raju, Robin G Bombardi, Amyn A Murji, Cathrine Scheepers, Rutendo Ziki, Charissa Mynhardt, Bryan E Shepherd, Alusha A Mamchak,[...]. Cell Host Microbe 2018
45
37

Human neutralizing antibodies elicited by SARS-CoV-2 infection.
Bin Ju, Qi Zhang, Jiwan Ge, Ruoke Wang, Jing Sun, Xiangyang Ge, Jiazhen Yu, Sisi Shan, Bing Zhou, Shuo Song,[...]. Nature 2020
910
17

Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies.
Christopher O Barnes, Anthony P West, Kathryn E Huey-Tubman, Magnus A G Hoffmann, Naima G Sharaf, Pauline R Hoffman, Nicholas Koranda, Harry B Gristick, Christian Gaebler, Frauke Muecksch,[...]. Cell 2020
418
17

Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody.
Dora Pinto, Young-Jun Park, Martina Beltramello, Alexandra C Walls, M Alejandra Tortorici, Siro Bianchi, Stefano Jaconi, Katja Culap, Fabrizia Zatta, Anna De Marco,[...]. Nature 2020
845
16

SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Christopher O Barnes, Claudia A Jette, Morgan E Abernathy, Kim-Marie A Dam, Shannon R Esswein, Harry B Gristick, Andrey G Malyutin, Naima G Sharaf, Kathryn E Huey-Tubman, Yu E Lee,[...]. Nature 2020
528
15

Broad neutralization of SARS-related viruses by human monoclonal antibodies.
Anna Z Wec, Daniel Wrapp, Andrew S Herbert, Daniel P Maurer, Denise Haslwanter, Mrunal Sakharkar, Rohit K Jangra, M Eugenia Dieterle, Asparouh Lilov, Deli Huang,[...]. Science 2020
321
15

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.
Namita T Gupta, Jason A Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Gur Yaari, Steven H Kleinstein. Bioinformatics 2015
274
14

Vaccine-Induced Antibodies that Neutralize Group 1 and Group 2 Influenza A Viruses.
M Gordon Joyce, Adam K Wheatley, Paul V Thomas, Gwo-Yu Chuang, Cinque Soto, Robert T Bailer, Aliaksandr Druz, Ivelin S Georgiev, Rebecca A Gillespie, Masaru Kanekiyo,[...]. Cell 2016
191
14

A noncompeting pair of human neutralizing antibodies block COVID-19 virus binding to its receptor ACE2.
Yan Wu, Feiran Wang, Chenguang Shen, Weiyu Peng, Delin Li, Cheng Zhao, Zhaohui Li, Shihua Li, Yuhai Bi, Yang Yang,[...]. Science 2020
590
14

Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike.
Lihong Liu, Pengfei Wang, Manoj S Nair, Jian Yu, Micah Rapp, Qian Wang, Yang Luo, Jasper F-W Chan, Vincent Sahi, Amir Figueroa,[...]. Nature 2020
715
14

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Daniel Wrapp, Nianshuang Wang, Kizzmekia S Corbett, Jory A Goldsmith, Ching-Lin Hsieh, Olubukola Abiona, Barney S Graham, Jason S McLellan. Science 2020
14

mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants.
Zijun Wang, Fabian Schmidt, Yiska Weisblum, Frauke Muecksch, Christopher O Barnes, Shlomo Finkin, Dennis Schaefer-Babajew, Melissa Cipolla, Christian Gaebler, Jenna A Lieberman,[...]. Nature 2021
667
14


Rapid isolation and profiling of a diverse panel of human monoclonal antibodies targeting the SARS-CoV-2 spike protein.
Seth J Zost, Pavlo Gilchuk, Rita E Chen, James Brett Case, Joseph X Reidy, Andrew Trivette, Rachel S Nargi, Rachel E Sutton, Naveenchandra Suryadevara, Elaine C Chen,[...]. Nat Med 2020
246
13

The promise and challenge of high-throughput sequencing of the antibody repertoire.
George Georgiou, Gregory C Ippolito, John Beausang, Christian E Busse, Hedda Wardemann, Stephen R Quake. Nat Biotechnol 2014
393
12

A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses.
Jon M Steichen, Ying-Cing Lin, Colin Havenar-Daughton, Simone Pecetta, Gabriel Ozorowski, Jordan R Willis, Laura Toy, Devin Sok, Alessia Liguori, Sven Kratochvil,[...]. Science 2019
83
14

Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing.
Xueling Wu, Tongqing Zhou, Jiang Zhu, Baoshan Zhang, Ivelin Georgiev, Charlene Wang, Xuejun Chen, Nancy S Longo, Mark Louder, Krisha McKee,[...]. Science 2011
649
12

Longitudinal Isolation of Potent Near-Germline SARS-CoV-2-Neutralizing Antibodies from COVID-19 Patients.
Christoph Kreer, Matthias Zehner, Timm Weber, Meryem S Ercanoglu, Lutz Gieselmann, Cornelius Rohde, Sandro Halwe, Michael Korenkov, Philipp Schommers, Kanika Vanshylla,[...]. Cell 2020
167
12

A human neutralizing antibody targets the receptor-binding site of SARS-CoV-2.
Rui Shi, Chao Shan, Xiaomin Duan, Zhihai Chen, Peipei Liu, Jinwen Song, Tao Song, Xiaoshan Bi, Chao Han, Lianao Wu,[...]. Nature 2020
698
12

A neutralizing human antibody binds to the N-terminal domain of the Spike protein of SARS-CoV-2.
Xiangyang Chi, Renhong Yan, Jun Zhang, Guanying Zhang, Yuanyuan Zhang, Meng Hao, Zhe Zhang, Pengfei Fan, Yunzhu Dong, Yilong Yang,[...]. Science 2020
713
12

Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Luca Piccoli, Young-Jun Park, M Alejandra Tortorici, Nadine Czudnochowski, Alexandra C Walls, Martina Beltramello, Chiara Silacci-Fregni, Dora Pinto, Laura E Rosen, John E Bowen,[...]. Cell 2020
494
12

Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail.
Johanna Hansen, Alina Baum, Kristen E Pascal, Vincenzo Russo, Stephanie Giordano, Elzbieta Wloga, Benjamin O Fulton, Ying Yan, Katrina Koon, Krunal Patel,[...]. Science 2020
595
11

Potently neutralizing and protective human antibodies against SARS-CoV-2.
Seth J Zost, Pavlo Gilchuk, James Brett Case, Elad Binshtein, Rita E Chen, Joseph P Nkolola, Alexandra Schäfer, Joseph X Reidy, Andrew Trivette, Rachel S Nargi,[...]. Nature 2020
522
11

High-throughput immune repertoire analysis with IGoR.
Quentin Marcou, Thierry Mora, Aleksandra M Walczak. Nat Commun 2018
84
11

Observed Antibody Space: A Resource for Data Mining Next-Generation Sequencing of Antibody Repertoires.
Aleksandr Kovaltsuk, Jinwoo Leem, Sebastian Kelm, James Snowden, Charlotte M Deane, Konrad Krawczyk. J Immunol 2018
46
21

MiXCR: software for comprehensive adaptive immunity profiling.
Dmitriy A Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Dmitriy M Chudakov. Nat Methods 2015
615
10

ANARCI: antigen receptor numbering and receptor classification.
James Dunbar, Charlotte M Deane. Bioinformatics 2016
88
11

Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Tongqing Zhou, Rebecca M Lynch, Lei Chen, Priyamvada Acharya, Xueling Wu, Nicole A Doria-Rose, M Gordon Joyce, Daniel Lingwood, Cinque Soto, Robert T Bailer,[...]. Cell 2015
211
10

Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements.
Katherine J L Jackson, Yi Liu, Krishna M Roskin, Jacob Glanville, Ramona A Hoh, Katie Seo, Eleanor L Marshall, Thaddeus C Gurley, M Anthony Moody, Barton F Haynes,[...]. Cell Host Microbe 2014
163
10

High-Throughput Mapping of B Cell Receptor Sequences to Antigen Specificity.
Ian Setliff, Andrea R Shiakolas, Kelsey A Pilewski, Amyn A Murji, Rutendo E Mapengo, Katarzyna Janowska, Simone Richardson, Charissa Oosthuysen, Nagarajan Raju, Larance Ronsard,[...]. Cell 2019
90
11

A highly conserved cryptic epitope in the receptor binding domains of SARS-CoV-2 and SARS-CoV.
Meng Yuan, Nicholas C Wu, Xueyong Zhu, Chang-Chun D Lee, Ray T Y So, Huibin Lv, Chris K P Mok, Ian A Wilson. Science 2020
815
10

A Public Database of Memory and Naive B-Cell Receptor Sequences.
William S DeWitt, Paul Lindau, Thomas M Snyder, Anna M Sherwood, Marissa Vignali, Christopher S Carlson, Philip D Greenberg, Natalie Duerkopp, Ryan O Emerson, Harlan S Robins. PLoS One 2016
76
11

Polyclonal and convergent antibody response to Ebola virus vaccine rVSV-ZEBOV.
Stefanie A Ehrhardt, Matthias Zehner, Verena Krähling, Hadas Cohen-Dvashi, Christoph Kreer, Nadav Elad, Henning Gruell, Meryem S Ercanoglu, Philipp Schommers, Lutz Gieselmann,[...]. Nat Med 2019
48
18

Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico.
Davide F Robbiani, Leonia Bozzacco, Jennifer R Keeffe, Ricardo Khouri, Priscilla C Olsen, Anna Gazumyan, Dennis Schaefer-Babajew, Santiago Avila-Rios, Lilian Nogueira, Roshni Patel,[...]. Cell 2017
187
9

Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding.
Johannes F Scheid, Hugo Mouquet, Beatrix Ueberheide, Ron Diskin, Florian Klein, Thiago Y K Oliveira, John Pietzsch, David Fenyo, Alexander Abadir, Klara Velinzon,[...]. Science 2011
836
9

Analysis of a SARS-CoV-2-Infected Individual Reveals Development of Potent Neutralizing Antibodies with Limited Somatic Mutation.
Emilie Seydoux, Leah J Homad, Anna J MacCamy, K Rachael Parks, Nicholas K Hurlburt, Madeleine F Jennewein, Nicholas R Akins, Andrew B Stuart, Yu-Hsin Wan, Junli Feng,[...]. Immunity 2020
226
9

Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2.
Sandra C A Nielsen, Fan Yang, Katherine J L Jackson, Ramona A Hoh, Katharina Röltgen, Grace H Jean, Bryan A Stevens, Ji-Yeun Lee, Arjun Rustagi, Angela J Rogers,[...]. Cell Host Microbe 2020
103
9

Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms.
M Alejandra Tortorici, Martina Beltramello, Florian A Lempp, Dora Pinto, Ha V Dang, Laura E Rosen, Matthew McCallum, John Bowen, Andrea Minola, Stefano Jaconi,[...]. Science 2020
263
9

Convergent antibody signatures in human dengue.
Poornima Parameswaran, Yi Liu, Krishna M Roskin, Katherine K L Jackson, Vaishali P Dixit, Ji-Yeun Lee, Karen L Artiles, Simona Zompi, Maria José Vargas, Birgitte B Simen,[...]. Cell Host Microbe 2013
173
9

SARS-CoV-2 501Y.V2 escapes neutralization by South African COVID-19 donor plasma.
Constantinos Kurt Wibmer, Frances Ayres, Tandile Hermanus, Mashudu Madzivhandila, Prudence Kgagudi, Brent Oosthuysen, Bronwen E Lambson, Tulio de Oliveira, Marion Vermeulen, Karin van der Berg,[...]. Nat Med 2021
619
9

Antibody resistance of SARS-CoV-2 variants B.1.351 and B.1.1.7.
Pengfei Wang, Manoj S Nair, Lihong Liu, Sho Iketani, Yang Luo, Yicheng Guo, Maple Wang, Jian Yu, Baoshan Zhang, Peter D Kwong,[...]. Nature 2021
845
9

Five computational developability guidelines for therapeutic antibody profiling.
Matthew I J Raybould, Claire Marks, Konrad Krawczyk, Bruck Taddese, Jaroslaw Nowak, Alan P Lewis, Alexander Bujotzek, Jiye Shi, Charlotte M Deane. Proc Natl Acad Sci U S A 2019
78
10

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
Jason A Vander Heiden, Gur Yaari, Mohamed Uduman, Joel N H Stern, Kevin C O'Connor, David A Hafler, Francois Vigneault, Steven H Kleinstein. Bioinformatics 2014
195
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.