A citation-based method for searching scientific literature

Patricia R Braun, Shizhong Han, Benjamin Hing, Yasunori Nagahama, Lindsey N Gaul, Jonathan T Heinzman, Andrew J Grossbach, Liesl Close, Brian J Dlouhy, Matthew A Howard, Hiroto Kawasaki, James B Potash, Gen Shinozaki. Transl Psychiatry 2019
Times Cited: 96







List of co-cited articles
798 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



BECon: a tool for interpreting DNA methylation findings from blood in the context of brain.
R D Edgar, M J Jones, M J Meaney, G Turecki, M S Kobor. Transl Psychiatry 2017
94
21

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
19

DNA extracted from saliva for methylation studies of psychiatric traits: evidence tissue specificity and relatedness to brain.
Alicia K Smith, Varun Kilaru, Torsten Klengel, Kristina B Mercer, Bekh Bradley, Karen N Conneely, Kerry J Ressler, Elisabeth B Binder. Am J Med Genet B Neuropsychiatr Genet 2015
182
18


DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
18

Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse.
Patrick O McGowan, Aya Sasaki, Ana C D'Alessio, Sergiy Dymov, Benoit Labonté, Moshe Szyf, Gustavo Turecki, Michael J Meaney. Nat Neurosci 2009
16

Epigenetic programming by maternal behavior.
Ian C G Weaver, Nadia Cervoni, Frances A Champagne, Ana C D'Alessio, Shakti Sharma, Jonathan R Seckl, Sergiy Dymov, Moshe Szyf, Michael J Meaney. Nat Neurosci 2004
16

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.
Matthew N Davies, Manuela Volta, Ruth Pidsley, Katie Lunnon, Abhishek Dixit, Simon Lovestone, Cristian Coarfa, R Alan Harris, Aleksandar Milosavljevic, Claire Troakes,[...]. Genome Biol 2012
451
15

Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions.
Torsten Klengel, Divya Mehta, Christoph Anacker, Monika Rex-Haffner, Jens C Pruessner, Carmine M Pariante, Thaddeus W W Pace, Kristina B Mercer, Helen S Mayberg, Bekh Bradley,[...]. Nat Neurosci 2013
798
12

Correspondence of DNA Methylation Between Blood and Brain Tissue and Its Application to Schizophrenia Research.
Esther Walton, Johanna Hass, Jingyu Liu, Joshua L Roffman, Fabio Bernardoni, Veit Roessner, Matthias Kirsch, Gabriele Schackert, Vince Calhoun, Stefan Ehrlich. Schizophr Bull 2016
145
12

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
739
10

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
10

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
997
10

Prenatal exposure to maternal depression, neonatal methylation of human glucocorticoid receptor gene (NR3C1) and infant cortisol stress responses.
Tim F Oberlander, Joanne Weinberg, Michael Papsdorf, Ruth Grunau, Shaila Misri, Angela M Devlin. Epigenetics 2008
830
10

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
498
10

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger, Peter Molloy, Susan Van Djik, Beverly Muhlhausler, Clare Stirzaker, Susan J Clark. Genome Biol 2016
378
10

DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
959
9


The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Jeffrey T Leek, W Evan Johnson, Hilary S Parker, Andrew E Jaffe, John D Storey. Bioinformatics 2012
8

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.
Jean-Philippe Fortin, Timothy J Triche, Kasper D Hansen. Bioinformatics 2017
213
8

Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
8

Childhood maltreatment is associated with distinct genomic and epigenetic profiles in posttraumatic stress disorder.
Divya Mehta, Torsten Klengel, Karen N Conneely, Alicia K Smith, André Altmann, Thaddeus W Pace, Monika Rex-Haffner, Anne Loeschner, Mariya Gonik, Kristina B Mercer,[...]. Proc Natl Acad Sci U S A 2013
285
8

An integrated genetic-epigenetic analysis of schizophrenia: evidence for co-localization of genetic associations and differential DNA methylation.
Eilis Hannon, Emma Dempster, Joana Viana, Joe Burrage, Adam R Smith, Ruby Macdonald, David St Clair, Colette Mustard, Gerome Breen, Sebastian Therman,[...]. Genome Biol 2016
148
8

Systematic identification of genetic influences on methylation across the human life course.
Tom R Gaunt, Hashem A Shihab, Gibran Hemani, Josine L Min, Geoff Woodward, Oliver Lyttleton, Jie Zheng, Aparna Duggirala, Wendy L McArdle, Karen Ho,[...]. Genome Biol 2016
258
8


missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.
Belinda Phipson, Jovana Maksimovic, Alicia Oshlack. Bioinformatics 2016
218
7

Epigenomic profiling reveals DNA-methylation changes associated with major psychosis.
Jonathan Mill, Thomas Tang, Zachary Kaminsky, Tarang Khare, Simin Yazdanpanah, Luigi Bouchard, Peixin Jia, Abbas Assadzadeh, James Flanagan, Axel Schumacher,[...]. Am J Hum Genet 2008
519
7


DNA methylation signatures in development and aging of the human prefrontal cortex.
Shusuke Numata, Tianzhang Ye, Thomas M Hyde, Xavier Guitart-Navarro, Ran Tao, Michael Wininger, Carlo Colantuoni, Daniel R Weinberger, Joel E Kleinman, Barbara K Lipska. Am J Hum Genet 2012
253
7

DNA methylation changes in plasticity genes accompany the formation and maintenance of memory.
Rashi Halder, Magali Hennion, Ramon O Vidal, Orr Shomroni, Raza-Ur Rahman, Ashish Rajput, Tonatiuh Pena Centeno, Frauke van Bebber, Vincenzo Capece, Julio C Garcia Vizcaino,[...]. Nat Neurosci 2016
164
7

Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex.
Andrew E Jaffe, Yuan Gao, Amy Deep-Soboslay, Ran Tao, Thomas M Hyde, Daniel R Weinberger, Joel E Kleinman. Nat Neurosci 2016
239
7

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
7

Comprehensive analysis of DNA methylation data with RnBeads.
Yassen Assenov, Fabian Müller, Pavlo Lutsik, Jörn Walter, Thomas Lengauer, Christoph Bock. Nat Methods 2014
365
6

DNA methylation and healthy human aging.
Meaghan J Jones, Sarah J Goodman, Michael S Kobor. Aging Cell 2015
344
6

The role of DNA methylation in stress-related psychiatric disorders.
Torsten Klengel, Julius Pape, Elisabeth B Binder, Divya Mehta. Neuropharmacology 2014
155
6


MAOA gene hypomethylation in panic disorder-reversibility of an epigenetic risk pattern by psychotherapy.
C Ziegler, J Richter, M Mahr, A Gajewska, M A Schiele, A Gehrmann, B Schmidt, K-P Lesch, T Lang, S Helbig-Lang,[...]. Transl Psychiatry 2016
84
7

Epigenetic aberrations in leukocytes of patients with schizophrenia: association of global DNA methylation with antipsychotic drug treatment and disease onset.
Philippe A Melas, Maria Rogdaki, Urban Ösby, Martin Schalling, Catharina Lavebratt, Tomas J Ekström. FASEB J 2012
126
6

DNA Methylation Clocks in Aging: Categories, Causes, and Consequences.
Adam E Field, Neil A Robertson, Tina Wang, Aaron Havas, Trey Ideker, Peter D Adams. Mol Cell 2018
149
6

Childhood adversity and epigenetic modulation of the leukocyte glucocorticoid receptor: preliminary findings in healthy adults.
Audrey R Tyrka, Lawrence H Price, Carmen Marsit, Oakland C Walters, Linda L Carpenter. PLoS One 2012
281
6

Differential glucocorticoid receptor exon 1(B), 1(C), and 1(H) expression and methylation in suicide completers with a history of childhood abuse.
Benoit Labonte, Volodymyr Yerko, Jeffrey Gross, Naguib Mechawar, Michael J Meaney, Moshe Szyf, Gustavo Turecki. Biol Psychiatry 2012
192
6

Characterizing genetic and environmental influences on variable DNA methylation using monozygotic and dizygotic twins.
Eilis Hannon, Olivia Knox, Karen Sugden, Joe Burrage, Chloe C Y Wong, Daniel W Belsky, David L Corcoran, Louise Arseneault, Terrie E Moffitt, Avshalom Caspi,[...]. PLoS Genet 2018
60
10

Increased methylation of glucocorticoid receptor gene (NR3C1) in adults with a history of childhood maltreatment: a link with the severity and type of trauma.
N Perroud, A Paoloni-Giacobino, P Prada, E Olié, A Salzmann, R Nicastro, S Guillaume, D Mouthon, C Stouder, K Dieben,[...]. Transl Psychiatry 2011
267
6


methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
Altuna Akalin, Matthias Kormaksson, Sheng Li, Francine E Garrett-Bakelman, Maria E Figueroa, Ari Melnick, Christopher E Mason. Genome Biol 2012
708
5

Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies.
Robert Lowe, Carolina Gemma, Huriya Beyan, Mohammed I Hawa, Alexandra Bazeos, R David Leslie, Alexandre Montpetit, Vardhman K Rakyan, Sreeram V Ramagopalan. Epigenetics 2013
102
5


Childhood maternal care is associated with DNA methylation of the genes for brain-derived neurotrophic factor (BDNF) and oxytocin receptor (OXTR) in peripheral blood cells in adult men and women.
Eva Unternaehrer, Andrea Hans Meyer, Susan C A Burkhardt, Emma Dempster, Simon Staehli, Nathan Theill, Roselind Lieb, Gunther Meinlschmidt. Stress 2015
93
5

Epigenetics of Posttraumatic Stress Disorder: Current Evidence, Challenges, and Future Directions.
Anthony S Zannas, Nadine Provençal, Elisabeth B Binder. Biol Psychiatry 2015
91
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.