A citation-based method for searching scientific literature

Mireia Valles-Colomer, Gwen Falony, Youssef Darzi, Ettje F Tigchelaar, Jun Wang, Raul Y Tito, Carmen Schiweck, Alexander Kurilshikov, Marie Joossens, Cisca Wijmenga, Stephan Claes, Lukas Van Oudenhove, Alexandra Zhernakova, Sara Vieira-Silva, Jeroen Raes. Nat Microbiol 2019
Times Cited: 356







List of co-cited articles
961 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host's metabolism.
P Zheng, B Zeng, C Zhou, M Liu, Z Fang, X Xu, L Zeng, J Chen, S Fan, X Du,[...]. Mol Psychiatry 2016
615
26

Altered fecal microbiota composition in patients with major depressive disorder.
Haiyin Jiang, Zongxin Ling, Yonghua Zhang, Hongjin Mao, Zhanping Ma, Yan Yin, Weihong Wang, Wenxin Tang, Zhonglin Tan, Jianfei Shi,[...]. Brain Behav Immun 2015
706
26

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat.
John R Kelly, Yuliya Borre, Ciaran O' Brien, Elaine Patterson, Sahar El Aidy, Jennifer Deane, Paul J Kennedy, Sasja Beers, Karen Scott, Gerard Moloney,[...]. J Psychiatr Res 2016
485
24

Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve.
Javier A Bravo, Paul Forsythe, Marianne V Chew, Emily Escaravage, Hélène M Savignac, Timothy G Dinan, John Bienenstock, John F Cryan. Proc Natl Acad Sci U S A 2011
22

Correlation between the human fecal microbiota and depression.
A Naseribafrouei, K Hestad, E Avershina, M Sekelja, A Linløkken, R Wilson, K Rudi. Neurogastroenterol Motil 2014
422
19



Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
15

The Microbiota-Gut-Brain Axis.
John F Cryan, Kenneth J O'Riordan, Caitlin S M Cowan, Kiran V Sandhu, Thomaz F S Bastiaanssen, Marcus Boehme, Martin G Codagnone, Sofia Cussotto, Christine Fulling, Anna V Golubeva,[...]. Physiol Rev 2019
422
14

Host microbiota constantly control maturation and function of microglia in the CNS.
Daniel Erny, Anna Lena Hrabě de Angelis, Diego Jaitin, Peter Wieghofer, Ori Staszewski, Eyal David, Hadas Keren-Shaul, Tanel Mahlakoiv, Kristin Jakobshagen, Thorsten Buch,[...]. Nat Neurosci 2015
14

Postnatal microbial colonization programs the hypothalamic-pituitary-adrenal system for stress response in mice.
Nobuyuki Sudo, Yoichi Chida, Yuji Aiba, Junko Sonoda, Naomi Oyama, Xiao-Nian Yu, Chiharu Kubo, Yasuhiro Koga. J Physiol 2004
13

Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis.
Jessica M Yano, Kristie Yu, Gregory P Donaldson, Gauri G Shastri, Phoebe Ann, Liang Ma, Cathryn R Nagler, Rustem F Ismagilov, Sarkis K Mazmanian, Elaine Y Hsiao. Cell 2015
13

Normal gut microbiota modulates brain development and behavior.
Rochellys Diaz Heijtz, Shugui Wang, Farhana Anuar, Yu Qian, Britta Björkholm, Annika Samuelsson, Martin L Hibberd, Hans Forssberg, Sven Pettersson. Proc Natl Acad Sci U S A 2011
13

The gut microbiota influences blood-brain barrier permeability in mice.
Viorica Braniste, Maha Al-Asmakh, Czeslawa Kowal, Farhana Anuar, Afrouz Abbaspour, Miklós Tóth, Agata Korecka, Nadja Bakocevic, Lai Guan Ng, Parag Kundu,[...]. Sci Transl Med 2014
749
12

DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
12

The intestinal microbiota affect central levels of brain-derived neurotropic factor and behavior in mice.
Premysl Bercik, Emmanuel Denou, Josh Collins, Wendy Jackson, Jun Lu, Jennifer Jury, Yikang Deng, Patricia Blennerhassett, Joseph Macri, Kathy D McCoy,[...]. Gastroenterology 2011
791
11

Possible association of Bifidobacterium and Lactobacillus in the gut microbiota of patients with major depressive disorder.
Emiko Aizawa, Hirokazu Tsuji, Takashi Asahara, Takuya Takahashi, Toshiya Teraishi, Sumiko Yoshida, Miho Ota, Norie Koga, Kotaro Hattori, Hiroshi Kunugi. J Affect Disord 2016
173
11

Human gut microbiome viewed across age and geography.
Tanya Yatsunenko, Federico E Rey, Mark J Manary, Indi Trehan, Maria Gloria Dominguez-Bello, Monica Contreras, Magda Magris, Glida Hidalgo, Robert N Baldassano, Andrey P Anokhin,[...]. Nature 2012
11

The microbiome-gut-brain axis during early life regulates the hippocampal serotonergic system in a sex-dependent manner.
G Clarke, S Grenham, P Scully, P Fitzgerald, R D Moloney, F Shanahan, T G Dinan, J F Cryan. Mol Psychiatry 2013
771
11

A human gut microbial gene catalogue established by metagenomic sequencing.
Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam, Kristoffer Solvsten Burgdorf, Chaysavanh Manichanh, Trine Nielsen, Nicolas Pons, Florence Levenez, Takuji Yamada,[...]. Nature 2010
11

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
10

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease.
Timothy R Sampson, Justine W Debelius, Taren Thron, Stefan Janssen, Gauri G Shastri, Zehra Esra Ilhan, Collin Challis, Catherine E Schretter, Sandra Rocha, Viviana Gradinaru,[...]. Cell 2016
10

Gut-brain axis: how the microbiome influences anxiety and depression.
Jane A Foster, Karen-Anne McVey Neufeld. Trends Neurosci 2013
882
9

Assessment of psychotropic-like properties of a probiotic formulation (Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in rats and human subjects.
Michaël Messaoudi, Robert Lalonde, Nicolas Violle, Hervé Javelot, Didier Desor, Amine Nejdi, Jean-François Bisson, Catherine Rougeot, Matthieu Pichelin, Murielle Cazaubiel,[...]. Br J Nutr 2011
610
9

Systematic Review of Gut Microbiota and Major Depression.
Stephanie G Cheung, Ariel R Goldenthal, Anne-Catrin Uhlemann, J John Mann, Jeffrey M Miller, M Elizabeth Sublette. Front Psychiatry 2019
120
9

Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics.
Glenn R Gibson, Robert Hutkins, Mary Ellen Sanders, Susan L Prescott, Raylene A Reimer, Seppo J Salminen, Karen Scott, Catherine Stanton, Kelly S Swanson, Patrice D Cani,[...]. Nat Rev Gastroenterol Hepatol 2017
947
9

Gut microbiota and major depressive disorder: A systematic review and meta-analysis.
Kenji Sanada, Shinichiro Nakajima, Shunya Kurokawa, Alberto Barceló-Soler, Daisuke Ikuse, Akihito Hirata, Akira Yoshizawa, Yoshihiro Tomizawa, Montserrat Salas-Valero, Yoshihiro Noda,[...]. J Affect Disord 2020
40
22

Microbiota is essential for social development in the mouse.
L Desbonnet, G Clarke, F Shanahan, T G Dinan, J F Cryan. Mol Psychiatry 2014
438
9

The role of short-chain fatty acids in microbiota-gut-brain communication.
Boushra Dalile, Lukas Van Oudenhove, Bram Vervliet, Kristin Verbeke. Nat Rev Gastroenterol Hepatol 2019
290
9

Probiotic Bifidobacterium longum NCC3001 Reduces Depression Scores and Alters Brain Activity: A Pilot Study in Patients With Irritable Bowel Syndrome.
Maria Ines Pinto-Sanchez, Geoffrey B Hall, Kathy Ghajar, Andrea Nardelli, Carolina Bolino, Jennifer T Lau, Francois-Pierre Martin, Ornella Cominetti, Christopher Welsh, Amber Rieder,[...]. Gastroenterology 2017
243
9

GABA-modulating bacteria of the human gut microbiota.
Philip Strandwitz, Ki Hyun Kim, Darya Terekhova, Joanne K Liu, Anukriti Sharma, Jennifer Levering, Daniel McDonald, David Dietrich, Timothy R Ramadhar, Asama Lekbua,[...]. Nat Microbiol 2019
164
9

The anxiolytic effect of Bifidobacterium longum NCC3001 involves vagal pathways for gut-brain communication.
P Bercik, A J Park, D Sinclair, A Khoshdel, J Lu, X Huang, Y Deng, P A Blennerhassett, M Fahnestock, D Moine,[...]. Neurogastroenterol Motil 2011
454
8

Gut microbiome and depression: what we know and what we need to know.
Gal Winter, Robert A Hart, Richard P G Charlesworth, Christopher F Sharpley. Rev Neurosci 2018
76
10

Effect of probiotic and prebiotic vs placebo on psychological outcomes in patients with major depressive disorder: A randomized clinical trial.
Asma Kazemi, Ahmad Ali Noorbala, Kamal Azam, Mohammad Hadi Eskandari, Kurosh Djafarian. Clin Nutr 2019
93
8

Probiotic Lactobacillus Plantarum 299v decreases kynurenine concentration and improves cognitive functions in patients with major depression: A double-blind, randomized, placebo controlled study.
Leszek Rudzki, Lucyna Ostrowska, Dariusz Pawlak, Aleksandra Małus, Krystyna Pawlak, Napoleon Waszkiewicz, Agata Szulc. Psychoneuroendocrinology 2019
89
8

Serotonin, tryptophan metabolism and the brain-gut-microbiome axis.
S M O'Mahony, G Clarke, Y E Borre, T G Dinan, J F Cryan. Behav Brain Res 2015
647
8

Metagenomic biomarker discovery and explanation.
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower. Genome Biol 2011
8

Psychobiotics: a novel class of psychotropic.
Timothy G Dinan, Catherine Stanton, John F Cryan. Biol Psychiatry 2013
430
8


Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites.
William R Wikoff, Andrew T Anfora, Jun Liu, Peter G Schultz, Scott A Lesley, Eric C Peters, Gary Siuzdak. Proc Natl Acad Sci U S A 2009
8

Psychobiotics and the Manipulation of Bacteria-Gut-Brain Signals.
Amar Sarkar, Soili M Lehto, Siobhán Harty, Timothy G Dinan, John F Cryan, Philip W J Burnet. Trends Neurosci 2016
244
8

Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders.
Elaine Y Hsiao, Sara W McBride, Sophia Hsien, Gil Sharon, Embriette R Hyde, Tyler McCue, Julian A Codelli, Janet Chow, Sarah E Reisman, Joseph F Petrosino,[...]. Cell 2013
8


Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.
Gil Sharon, Nikki Jamie Cruz, Dae-Wook Kang, Michael J Gandal, Bo Wang, Young-Mo Kim, Erika M Zink, Cameron P Casey, Bryn C Taylor, Christianne J Lane,[...]. Cell 2019
209
8

Reduced anxiety-like behavior and central neurochemical change in germ-free mice.
K M Neufeld, N Kang, J Bienenstock, J A Foster. Neurogastroenterol Motil 2011
683
7

Comparative metaproteomics analysis shows altered fecal microbiota signatures in patients with major depressive disorder.
Zhi Chen, Jie Li, Siwen Gui, Chanjuan Zhou, Jianjun Chen, Chuangchuang Yang, Zicheng Hu, Haiyang Wang, Xiaogang Zhong, Li Zeng,[...]. Neuroreport 2018
59
11

Gut Microbiota Regulation of Tryptophan Metabolism in Health and Disease.
Allison Agus, Julien Planchais, Harry Sokol. Cell Host Microbe 2018
387
7

Prevotella and Klebsiella proportions in fecal microbial communities are potential characteristic parameters for patients with major depressive disorder.
Ping Lin, Bingyu Ding, Chunyan Feng, Shuwei Yin, Ting Zhang, Xin Qi, Huiying Lv, Xiaokui Guo, Ke Dong, Yongzhang Zhu,[...]. J Affect Disord 2017
96
7

Extensive impact of non-antibiotic drugs on human gut bacteria.
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori,[...]. Nature 2018
585
7

Linking long-term dietary patterns with gut microbial enterotypes.
Gary D Wu, Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A Keilbaugh, Meenakshi Bewtra, Dan Knights, William A Walters, Rob Knight,[...]. Science 2011
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.