A citation-based method for searching scientific literature

Siddharth Shukla, Glen A Bjerke, Denise Muhlrad, Rui Yi, Roy Parker. Mol Cell 2019
Times Cited: 23







List of co-cited articles
283 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Positive and negative feedback loops in the p53 and mRNA 3' processing pathways.
Emral Devany, Xiaokan Zhang, Ji Yeon Park, Bin Tian, Frida Esther Kleiman. Proc Natl Acad Sci U S A 2013
34
34

Inhibition of telomerase RNA decay rescues telomerase deficiency caused by dyskerin or PARN defects.
Siddharth Shukla, Jens C Schmidt, Katherine C Goldfarb, Thomas R Cech, Roy Parker. Nat Struct Mol Biol 2016
61
34

Poly(A)-specific ribonuclease (PARN) mediates 3'-end maturation of the telomerase RNA component.
Diane H Moon, Matthew Segal, Baris Boyraz, Eva Guinan, Inga Hofmann, Patrick Cahan, Albert K Tai, Suneet Agarwal. Nat Genet 2015
99
34

Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming.
Heike Berndt, Christiane Harnisch, Christiane Rammelt, Nadine Stöhr, Anne Zirkel, Juliane C Dohm, Heinz Himmelbauer, Joao-Paulo Tavanez, Stefan Hüttelmaier, Elmar Wahle. RNA 2012
103
34

Poly(A)-specific ribonuclease deficiency impacts telomere biology and causes dyskeratosis congenita.
Hemanth Tummala, Amanda Walne, Laura Collopy, Shirleny Cardoso, Josu de la Fuente, Sarah Lawson, James Powell, Nicola Cooper, Alison Foster, Shehla Mohammed,[...]. J Clin Invest 2015
102
34

PARN deadenylase is involved in miRNA-dependent degradation of TP53 mRNA in mammalian cells.
Xiaokan Zhang, Emral Devany, Michael R Murphy, Galina Glazman, Mirjana Persaud, Frida E Kleiman. Nucleic Acids Res 2015
31
30

PARN Modulates Y RNA Stability and Its 3'-End Formation.
Siddharth Shukla, Roy Parker. Mol Cell Biol 2017
20
35

PARN and TOE1 Constitute a 3' End Maturation Module for Nuclear Non-coding RNAs.
Ahyeon Son, Jong-Eun Park, V Narry Kim. Cell Rep 2018
29
30

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.
Joost Boele, Helena Persson, Jay W Shin, Yuri Ishizu, Inga S Newie, Rolf Søkilde, Shannon M Hawkins, Cristian Coarfa, Kazuhiro Ikeda, Ken-ichi Takayama,[...]. Proc Natl Acad Sci U S A 2014
88
30

A Polyadenylation-Dependent 3' End Maturation Pathway Is Required for the Synthesis of the Human Telomerase RNA.
Duy Nguyen, Valérie Grenier St-Sauveur, Danny Bergeron, Fabien Dupuis-Sandoval, Michelle S Scott, François Bachand. Cell Rep 2015
68
26

Mammalian DIS3L2 exoribonuclease targets the uridylated precursors of let-7 miRNAs.
Dmytro Ustianenko, Dominika Hrossova, David Potesil, Katerina Chalupnikova, Kristyna Hrazdilova, Jiri Pachernik, Katerina Cetkovska, Stjepan Uldrijan, Zbynek Zdrahal, Stepanka Vanacova. RNA 2013
110
26

Dis3l2-Mediated Decay Is a Quality Control Pathway for Noncoding RNAs.
Mehdi Pirouz, Peng Du, Marzia Munafò, Richard I Gregory. Cell Rep 2016
56
26

Multifunctional deadenylase complexes diversify mRNA control.
Aaron C Goldstrohm, Marvin Wickens. Nat Rev Mol Cell Biol 2008
264
26


Bone marrow failure and developmental delay caused by mutations in poly(A)-specific ribonuclease (PARN).
Santhosh Dhanraj, Sethu Madhava Rao Gunja, Adam P Deveau, Mikael Nissbeck, Boonchai Boonyawat, Andrew J Coombs, Alessandra Renieri, Mafalda Mucciolo, Annabella Marozza, Sabrina Buoni,[...]. J Med Genet 2015
51
21

Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.
Bridget D Stuart, Jungmin Choi, Samir Zaidi, Chao Xing, Brody Holohan, Rui Chen, Mihwa Choi, Pooja Dharwadkar, Fernando Torres, Carlos E Girod,[...]. Nat Genet 2015
235
21

Poly(A)-specific ribonuclease is a nuclear ribosome biogenesis factor involved in human 18S rRNA maturation.
Christian Montellese, Nathalie Montel-Lehry, Anthony K Henras, Ulrike Kutay, Pierre-Emmanuel Gleizes, Marie-Françoise O'Donohue. Nucleic Acids Res 2017
28
21

Destabilization of microRNAs in human cells by 3' deadenylation mediated by PARN and CUGBP1.
Takayuki Katoh, Hiroaki Hojo, Tsutomu Suzuki. Nucleic Acids Res 2015
46
21

Uridylation by TUT4 and TUT7 marks mRNA for degradation.
Jaechul Lim, Minju Ha, Hyeshik Chang, S Chul Kwon, Dhirendra K Simanshu, Dinshaw J Patel, V Narry Kim. Cell 2014
139
21

A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28-let-7 pathway.
Hao-Ming Chang, Robinson Triboulet, James E Thornton, Richard I Gregory. Nature 2013
208
21

Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.
Anna Łabno, Zbigniew Warkocki, Tomasz Kuliński, Paweł Szczepan Krawczyk, Krystian Bijata, Rafał Tomecki, Andrzej Dziembowski. Nucleic Acids Res 2016
53
21

Mechanism of Dis3l2 substrate recognition in the Lin28-let-7 pathway.
Christopher R Faehnle, Jack Walleshauser, Leemor Joshua-Tor. Nature 2014
78
21

TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs.
Dmytro Ustianenko, Josef Pasulka, Zuzana Feketova, Lukas Bednarik, Dagmar Zigackova, Andrea Fortova, Mihaela Zavolan, Stepanka Vanacova. EMBO J 2016
52
21

DNA damage activates a spatially distinct late cytoplasmic cell-cycle checkpoint network controlled by MK2-mediated RNA stabilization.
H Christian Reinhardt, Pia Hasskamp, Ingolf Schmedding, Sandra Morandell, Marcel A T M van Vugt, Xiaozhe Wang, Rune Linding, Shao-En Ong, David Weaver, Steven A Carr,[...]. Mol Cell 2010
155
21

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.
Mayuko Yoda, Daniel Cifuentes, Natsuko Izumi, Yuriko Sakaguchi, Tsutomu Suzuki, Antonio J Giraldez, Yukihide Tomari. Cell Rep 2013
100
21

Disruption of Telomerase RNA Maturation Kinetics Precipitates Disease.
Caitlin M Roake, Lu Chen, Ananya L Chakravarthy, James E Ferrell, Grazia D Raffa, Steven E Artandi. Mol Cell 2019
20
25

Metazoan MicroRNAs.
David P Bartel. Cell 2018
21

Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila.
Madalena M Reimão-Pinto, Raphael A Manzenreither, Thomas R Burkard, Pawel Sledz, Martin Jinek, Karl Mechtler, Stefan L Ameres. EMBO J 2016
34
21

Human Telomerase RNA Processing and Quality Control.
Chi-Kang Tseng, Hui-Fang Wang, Allison M Burns, Morgan R Schroeder, Martina Gaspari, Peter Baumann. Cell Rep 2015
76
17

Poly(A)-specific ribonuclease regulates the processing of small-subunit rRNAs in human cells.
Hideaki Ishikawa, Harunori Yoshikawa, Keiichi Izumikawa, Yutaka Miura, Masato Taoka, Yuko Nobe, Yoshio Yamauchi, Hiroshi Nakayama, Richard J Simpson, Toshiaki Isobe,[...]. Nucleic Acids Res 2017
22
18

The PARN deadenylase targets a discrete set of mRNAs for decay and regulates cell motility in mouse myoblasts.
Jerome E Lee, Ju Youn Lee, Jarrett Trembly, Jeffrey Wilusz, Bin Tian, Carol J Wilusz. PLoS Genet 2012
41
17

Modulation of poly(A)-specific ribonuclease (PARN): current knowledge and perspectives.
N A A Balatsos, P Maragozidis, D Anastasakis, C Stathopoulos. Curr Med Chem 2012
20
20

The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathway.
Michal Malecki, Sandra C Viegas, Tiago Carneiro, Pawel Golik, Clémentine Dressaire, Miguel G Ferreira, Cecília M Arraiano. EMBO J 2013
133
17

Loss of Dis3l2 partially phenocopies Perlman syndrome in mice and results in up-regulation of Igf2 in nephron progenitor cells.
Ryan W Hunter, Yangjian Liu, Hema Manjunath, Asha Acharya, Benjamin T Jones, He Zhang, Beibei Chen, Harini Ramalingam, Robert E Hammer, Yang Xie,[...]. Genes Dev 2018
17
23

Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA.
Michal Lubas, Christian K Damgaard, Rafal Tomecki, Dominik Cysewski, Torben Heick Jensen, Andrzej Dziembowski. EMBO J 2013
102
17

Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase.
Rafal Tomecki, Aleksandra Dmochowska, Kamil Gewartowski, Andrzej Dziembowski, Piotr P Stepien. Nucleic Acids Res 2004
123
17


Nuclear deadenylation/polyadenylation factors regulate 3' processing in response to DNA damage.
Murat A Cevher, Xiaokan Zhang, Sully Fernandez, Sergey Kim, Jorge Baquero, Per Nilsson, Sean Lee, Anders Virtanen, Frida E Kleiman. EMBO J 2010
53
17

Deadenylation: enzymes, regulation, and functional implications.
Yong-Bin Yan. Wiley Interdiscip Rev RNA 2014
30
17

Poly(A)-tail profiling reveals an embryonic switch in translational control.
Alexander O Subtelny, Stephen W Eichhorn, Grace R Chen, Hazel Sive, David P Bartel. Nature 2014
329
17

Alterations of deadenylase expression in acute leukemias: evidence for poly(a)-specific ribonuclease as a potential biomarker.
Panayiotis Maragozidis, Maria Karangeli, Maria Labrou, Georgia Dimoulou, Konstantia Papaspyrou, Eralda Salataj, Spyridon Pournaras, Panagiota Matsouka, Konstantinos I Gourgoulianis, Nikolaos A A Balatsos. Acta Haematol 2012
28
17

Poly(A)-specific ribonuclease sculpts the 3' ends of microRNAs.
Dooyoung Lee, Daechan Park, June Hyun Park, Jong Heon Kim, Chanseok Shin. RNA 2019
8
50

A new yeast poly(A) polymerase complex involved in RNA quality control.
Stepánka Vanácová, Jeannette Wolf, Georges Martin, Diana Blank, Sabine Dettwiler, Arno Friedlein, Hanno Langen, Gérard Keith, Walter Keller. PLoS Biol 2005
448
17

Lin28-mediated control of let-7 microRNA expression by alternative TUTases Zcchc11 (TUT4) and Zcchc6 (TUT7).
James E Thornton, Hao-Ming Chang, Elena Piskounova, Richard I Gregory. RNA 2012
133
17

Exonuclease requirements for mammalian ribosomal RNA biogenesis and surveillance.
Mehdi Pirouz, Marzia Munafò, Aref G Ebrahimi, Junho Choe, Richard I Gregory. Nat Struct Mol Biol 2019
10
40

3' Uridylation Confers miRNAs with Non-canonical Target Repertoires.
Acong Yang, Xavier Bofill-De Ros, Tie-Juan Shao, Minjie Jiang, Katherine Li, Patricia Villanueva, Lisheng Dai, Shuo Gu. Mol Cell 2019
22
18

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.
A Maxwell Burroughs, Yoshinari Ando, Michiel J L de Hoon, Yasuhiro Tomaru, Takahiro Nishibu, Ryo Ukekawa, Taku Funakoshi, Tsutomu Kurokawa, Harukazu Suzuki, Yoshihide Hayashizaki,[...]. Genome Res 2010
249
17

TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications.
Hyeshik Chang, Jaechul Lim, Minju Ha, V Narry Kim. Mol Cell 2014
207
13

Apoptosis Triggers Specific, Rapid, and Global mRNA Decay with 3' Uridylated Intermediates Degraded by DIS3L2.
Marshall P Thomas, Xing Liu, Jennifer Whangbo, Geoffrey McCrossan, Keri B Sanborn, Emre Basar, Michael Walch, Judy Lieberman. Cell Rep 2015
84
13

Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.
Akio Yamashita, Tsung-Cheng Chang, Yukiko Yamashita, Wenmiao Zhu, Zhenping Zhong, Chyi-Ying A Chen, Ann-Bin Shyu. Nat Struct Mol Biol 2005
307
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.