A citation-based method for searching scientific literature

Qiaozhen Liu, Kuo Liu, Guizhong Cui, Xiuzhen Huang, Shun Yao, Wenke Guo, Zhen Qin, Yan Li, Rui Yang, Wenjuan Pu, Libo Zhang, Lingjuan He, Huan Zhao, Wei Yu, Muxue Tang, Xueying Tian, Dongqing Cai, Yu Nie, Shengshou Hu, Tao Ren, Zengyong Qiao, Hefeng Huang, Yi Arial Zeng, Naihe Jing, Guangdun Peng, Hongbin Ji, Bin Zhou. Nat Genet 2019
Times Cited: 94







List of co-cited articles
937 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of bronchioalveolar stem cells in normal lung and lung cancer.
Carla F Bender Kim, Erica L Jackson, Amber E Woolfenden, Sharon Lawrence, Imran Babar, Sinae Vogel, Denise Crowley, Roderick T Bronson, Tyler Jacks. Cell 2005
62

Type 2 alveolar cells are stem cells in adult lung.
Christina E Barkauskas, Michael J Cronce, Craig R Rackley, Emily J Bowie, Douglas R Keene, Barry R Stripp, Scott H Randell, Paul W Noble, Brigid L M Hogan. J Clin Invest 2013
751
60

Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo.
Isabelle Salwig, Birgit Spitznagel, Ana Ivonne Vazquez-Armendariz, Keynoosh Khalooghi, Stefan Guenther, Susanne Herold, Marten Szibor, Thomas Braun. EMBO J 2019
61
78

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.
William J Zacharias, David B Frank, Jarod A Zepp, Michael P Morley, Farrah A Alkhaleel, Jun Kong, Su Zhou, Edward Cantu, Edward E Morrisey. Nature 2018
245
46

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
252
46

The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium.
Emma L Rawlins, Tadashi Okubo, Yan Xue, David M Brass, Richard L Auten, Hiroshi Hasegawa, Fan Wang, Brigid L M Hogan. Cell Stem Cell 2009
507
41

Basal cells as stem cells of the mouse trachea and human airway epithelium.
Jason R Rock, Mark W Onaitis, Emma L Rawlins, Yun Lu, Cheryl P Clark, Yan Xue, Scott H Randell, Brigid L M Hogan. Proc Natl Acad Sci U S A 2009
851
39

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury.
Andrew E Vaughan, Alexis N Brumwell, Ying Xi, Jeffrey E Gotts, Doug G Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R Looney,[...]. Nature 2015
327
38

Alveolar progenitor and stem cells in lung development, renewal and cancer.
Tushar J Desai, Douglas G Brownfield, Mark A Krasnow. Nature 2014
466
34

Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function.
Brigid L M Hogan, Christina E Barkauskas, Harold A Chapman, Jonathan A Epstein, Rajan Jain, Connie C W Hsia, Laura Niklason, Elizabeth Calle, Andrew Le, Scott H Randell,[...]. Cell Stem Cell 2014
439
32

p63(+)Krt5(+) distal airway stem cells are essential for lung regeneration.
Wei Zuo, Ting Zhang, Daniel Zheng'An Wu, Shou Ping Guan, Audrey-Ann Liew, Yusuke Yamamoto, Xia Wang, Siew Joo Lim, Matthew Vincent, Mark Lessard,[...]. Nature 2015
258
30

Lung stem cell differentiation in mice directed by endothelial cells via a BMP4-NFATc1-thrombospondin-1 axis.
Joo-Hyeon Lee, Dong Ha Bhang, Alexander Beede, Tian Lian Huang, Barry R Stripp, Kenneth D Bloch, Amy J Wagers, Yu-Hua Tseng, Sandra Ryeom, Carla F Kim. Cell 2014
244
27

Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice.
Harold A Chapman, Xiaopeng Li, Jonathan P Alexander, Alexis Brumwell, Walter Lorizio, Kevin Tan, Arnoud Sonnenberg, Ying Wei, Thiennu H Vu. J Clin Invest 2011
263
24

Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Ying Xi, Thomas Kim, Alexis N Brumwell, Ian H Driver, Ying Wei, Victor Tan, Julia R Jackson, Jianming Xu, Dong-Kee Lee, Jeffrey E Gotts,[...]. Nat Cell Biol 2017
104
23

Distal airway stem cells yield alveoli in vitro and during lung regeneration following H1N1 influenza infection.
Pooja A Kumar, Yuanyu Hu, Yusuke Yamamoto, Neo Boon Hoe, Tay Seok Wei, Dakai Mu, Yan Sun, Lim Siew Joo, Rania Dagher, Elisabeth M Zielonka,[...]. Cell 2011
345
23

Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.
Joo-Hyeon Lee, Tuomas Tammela, Matan Hofree, Jinwook Choi, Nemanja Despot Marjanovic, Seungmin Han, David Canner, Katherine Wu, Margherita Paschini, Dong Ha Bhang,[...]. Cell 2017
166
23

Uroplakin 3a+ Cells Are a Distinctive Population of Epithelial Progenitors that Contribute to Airway Maintenance and Post-injury Repair.
Arjun Guha, Aditya Deshpande, Aradhya Jain, Paola Sebastiani, Wellington V Cardoso. Cell Rep 2017
44
47

Distinct Airway Epithelial Stem Cells Hide among Club Cells but Mobilize to Promote Alveolar Regeneration.
Jaymin J Kathiriya, Alexis N Brumwell, Julia R Jackson, Xiaodan Tang, Harold A Chapman. Cell Stem Cell 2020
42
50

Plasticity of Hopx(+) type I alveolar cells to regenerate type II cells in the lung.
Rajan Jain, Christina E Barkauskas, Norifumi Takeda, Emily J Bowie, Haig Aghajanian, Qiaohong Wang, Arun Padmanabhan, Lauren J Manderfield, Mudit Gupta, Deqiang Li,[...]. Nat Commun 2015
148
20

Dedifferentiation of committed epithelial cells into stem cells in vivo.
Purushothama Rao Tata, Hongmei Mou, Ana Pardo-Saganta, Rui Zhao, Mythili Prabhu, Brandon M Law, Vladimir Vinarsky, Josalyn L Cho, Sylvie Breton, Amar Sahay,[...]. Nature 2013
384
20

Notch-dependent differentiation of adult airway basal stem cells.
Jason R Rock, Xia Gao, Yan Xue, Scott H Randell, Young-Yun Kong, Brigid L M Hogan. Cell Stem Cell 2011
270
19


A revised airway epithelial hierarchy includes CFTR-expressing ionocytes.
Daniel T Montoro, Adam L Haber, Moshe Biton, Vladimir Vinarsky, Brian Lin, Susan E Birket, Feng Yuan, Sijia Chen, Hui Min Leung, Jorge Villoria,[...]. Nature 2018
386
18


Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.
Jarod A Zepp, William J Zacharias, David B Frank, Christina A Cavanaugh, Su Zhou, Michael P Morley, Edward E Morrisey. Cell 2017
214
18

Injury induces direct lineage segregation of functionally distinct airway basal stem/progenitor cell subpopulations.
Ana Pardo-Saganta, Brandon M Law, Purushothama Rao Tata, Jorge Villoria, Borja Saez, Hongmei Mou, Rui Zhao, Jayaraj Rajagopal. Cell Stem Cell 2015
110
17

Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation.
David B Frank, Tien Peng, Jarod A Zepp, Melinda Snitow, Tiffaney L Vincent, Ian J Penkala, Zheng Cui, Michael J Herriges, Michael P Morley, Su Zhou,[...]. Cell Rep 2016
106
15

Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy.
Andrew J Lechner, Ian H Driver, Jinwoo Lee, Carmen M Conroy, Abigail Nagle, Richard M Locksley, Jason R Rock. Cell Stem Cell 2017
97
15

The Cellular and Physiological Basis for Lung Repair and Regeneration: Past, Present, and Future.
Maria C Basil, Jeremy Katzen, Anna E Engler, Minzhe Guo, Michael J Herriges, Jaymin J Kathiriya, Rebecca Windmueller, Alexandra B Ysasi, William J Zacharias, Hal A Chapman,[...]. Cell Stem Cell 2020
78
19

Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate.
Yanjie Wang, Zan Tang, Huanwei Huang, Jiao Li, Zheng Wang, Yuanyuan Yu, Chengwei Zhang, Juan Li, Huaping Dai, Fengchao Wang,[...]. Proc Natl Acad Sci U S A 2018
73
19

Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition.
Jason R Rock, Christina E Barkauskas, Michael J Cronce, Yan Xue, Jeffrey R Harris, Jiurong Liang, Paul W Noble, Brigid L M Hogan. Proc Natl Acad Sci U S A 2011
591
14

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.
Barbara Treutlein, Doug G Brownfield, Angela R Wu, Norma F Neff, Gary L Mantalas, F Hernan Espinoza, Tushar J Desai, Mark A Krasnow, Stephen R Quake. Nature 2014
752
14

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte.
Lindsey W Plasschaert, Rapolas Žilionis, Rayman Choo-Wing, Virginia Savova, Judith Knehr, Guglielmo Roma, Allon M Klein, Aron B Jaffe. Nature 2018
354
14

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
80
17

Functional characterization of pulmonary neuroendocrine cells in lung development, injury, and tumorigenesis.
Hai Song, Erica Yao, Chuwen Lin, Rhodora Gacayan, Miao-Hsueh Chen, Pao-Tien Chuang. Proc Natl Acad Sci U S A 2012
158
14

Lung organoids: current uses and future promise.
Christina E Barkauskas, Mei-I Chung, Bryan Fioret, Xia Gao, Hiroaki Katsura, Brigid L M Hogan. Development 2017
155
14

A three-dimensional model of human lung development and disease from pluripotent stem cells.
Ya-Wen Chen, Sarah Xuelian Huang, Ana Luisa Rodrigues Toste de Carvalho, Siu-Hong Ho, Mohammad Naimul Islam, Stefano Volpi, Luigi D Notarangelo, Michael Ciancanelli, Jean-Laurent Casanova, Jahar Bhattacharya,[...]. Nat Cell Biol 2017
226
14

Evidence of an epithelial stem/progenitor cell hierarchy in the adult mouse lung.
Jonathan L McQualter, Karen Yuen, Brenda Williams, Ivan Bertoncello. Proc Natl Acad Sci U S A 2010
264
13

Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.
Anjali Jacob, Michael Morley, Finn Hawkins, Katherine B McCauley, J C Jean, Hillary Heins, Cheng-Lun Na, Timothy E Weaver, Marall Vedaie, Killian Hurley,[...]. Cell Stem Cell 2017
173
13

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.
Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey,[...]. JCI Insight 2016
257
13

Spatial-Temporal Lineage Restrictions of Embryonic p63+ Progenitors Establish Distinct Stem Cell Pools in Adult Airways.
Ying Yang, Paul Riccio, Michael Schotsaert, Munemasa Mori, Jining Lu, Dong-Kee Lee, Adolfo García-Sastre, Jianming Xu, Wellington V Cardoso. Dev Cell 2018
71
16

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
12

Efficient Derivation of Functional Human Airway Epithelium from Pluripotent Stem Cells via Temporal Regulation of Wnt Signaling.
Katherine B McCauley, Finn Hawkins, Maria Serra, Dylan C Thomas, Anjali Jacob, Darrell N Kotton. Cell Stem Cell 2017
176
12


In vitro generation of human pluripotent stem cell derived lung organoids.
Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein,[...]. Elife 2015
367
12

Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis.
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee,[...]. Nat Commun 2020
63
19

Neuroepithelial body microenvironment is a niche for a distinct subset of Clara-like precursors in the developing airways.
Arjun Guha, Michelle Vasconcelos, Yan Cai, Mitsuhiro Yoneda, Anne Hinds, Jun Qian, Guihua Li, Lauren Dickel, Jane E Johnson, Shioko Kimura,[...]. Proc Natl Acad Sci U S A 2012
87
12

In vivo differentiation potential of tracheal basal cells: evidence for multipotent and unipotent subpopulations.
Kyung U Hong, Susan D Reynolds, Simon Watkins, Elaine Fuchs, Barry R Stripp. Am J Physiol Lung Cell Mol Physiol 2004
228
11

Parabronchial smooth muscle constitutes an airway epithelial stem cell niche in the mouse lung after injury.
Thomas Volckaert, Erik Dill, Alice Campbell, Caterina Tiozzo, Susan Majka, Saverio Bellusci, Stijn P De Langhe. J Clin Invest 2011
146
11

Long-term expanding human airway organoids for disease modeling.
Norman Sachs, Angelos Papaspyropoulos, Domenique D Zomer-van Ommen, Inha Heo, Lena Böttinger, Dymph Klay, Fleur Weeber, Guizela Huelsz-Prince, Nino Iakobachvili, Gimano D Amatngalim,[...]. EMBO J 2019
241
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.